Wall clock time and date at job start Mon Mar 30 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46891 * 2 1 4 4 C 1.50704 * 109.47427 * 119.99772 * 2 1 3 5 5 H 1.08002 * 119.99785 * 119.99944 * 4 2 1 6 6 C 1.37879 * 120.00120 * 300.00071 * 4 2 1 7 7 N 1.31510 * 119.99693 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99918 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47465 * 60.00094 * 8 6 4 10 10 H 1.48501 * 109.47143 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47348 * 299.99982 * 8 6 4 12 12 C 1.50699 * 109.47389 * 240.00009 * 2 1 3 13 13 C 1.38302 * 119.96482 * 299.99965 * 12 2 1 14 14 C 1.38263 * 120.12965 * 179.97438 * 13 12 2 15 15 C 1.38138 * 120.06736 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.93491 * 0.02562 * 15 14 13 17 17 N 1.40202 * 120.06644 * 179.97438 * 16 15 14 18 18 C 1.34718 * 126.84067 * 4.99113 * 17 16 15 19 19 N 1.30859 * 108.03171 * 180.02562 * 18 17 16 20 20 C 1.33262 * 109.84086 * 359.97438 * 19 18 17 21 21 N 1.30745 * 109.00173 * 0.23320 * 20 19 18 22 22 C 1.38103 * 119.96838 * 120.25075 * 12 2 1 23 23 H 1.08998 * 109.47310 * 299.99589 * 1 2 3 24 24 H 1.08993 * 109.47094 * 60.00376 * 1 2 3 25 25 H 1.09001 * 109.46891 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00080 * 179.97438 * 7 6 4 27 27 H 1.07994 * 119.93751 * 0.02562 * 13 12 2 28 28 H 1.08004 * 119.95971 * 179.97438 * 14 13 12 29 29 H 1.08004 * 120.02921 * 180.02562 * 15 14 13 30 30 H 1.08003 * 125.98614 * 0.02562 * 18 17 16 31 31 H 1.08002 * 125.49468 * 179.97438 * 20 19 18 32 32 H 1.07994 * 120.03309 * 0.02562 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.8065 -1.1208 4.0081 10 1 1.8262 -0.4205 5.2205 11 1 1.8260 -2.5201 4.0078 12 6 2.0324 -0.7104 -1.2304 13 6 1.6978 -2.0345 -1.4486 14 6 2.1565 -2.6894 -2.5766 15 6 2.9501 -2.0224 -3.4895 16 6 3.2875 -0.6934 -3.2733 17 7 4.0932 -0.0139 -4.1978 18 6 4.5365 -0.4822 -5.3807 19 7 5.2570 0.4544 -5.9428 20 6 5.2966 1.5286 -5.1552 21 7 4.6029 1.2889 -4.0731 22 6 2.8306 -0.0401 -2.1364 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 1.0765 -2.5577 -0.7369 28 1 1.8939 -3.7236 -2.7440 29 1 3.3077 -2.5345 -4.3707 30 1 4.3329 -1.4595 -5.7928 31 1 5.8208 2.4473 -5.3735 32 1 3.0951 0.9925 -1.9633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:57 Heat of formation + Delta-G solvation = 96.785307 kcal Electronic energy + Delta-G solvation = -16468.856556 eV Core-core repulsion = 13816.570660 eV Total energy + Delta-G solvation = -2652.285897 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.28999 -40.34039 -36.65950 -34.82607 -33.26875 -32.35660 -30.98455 -29.56415 -27.23607 -25.19136 -24.40094 -23.12067 -22.14969 -21.22770 -18.93856 -18.16158 -17.11332 -16.84885 -16.73680 -16.32226 -15.95996 -15.10807 -14.91648 -14.62679 -14.27535 -13.99307 -13.44263 -13.23253 -12.90522 -12.82865 -12.76928 -12.47421 -12.24723 -12.07696 -11.65792 -11.31968 -11.14815 -11.03783 -10.96878 -10.49363 -9.67268 -9.21818 -8.11835 -6.26687 -0.17648 0.48768 1.09885 1.23394 1.42138 1.43232 1.50930 1.88876 2.41610 2.90129 3.16487 3.36165 3.48423 3.88921 4.05203 4.12976 4.34682 4.51189 4.55883 4.69576 4.87195 4.92401 5.08278 5.17830 5.23823 5.36524 5.41209 5.47779 5.50990 5.65762 5.79108 6.02927 6.04788 6.16564 6.31071 6.81744 6.96848 7.41579 8.92897 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.032453 B = 0.005569 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.572228 B = 5026.664949 C = 5284.756342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.069 3.931 3 H -0.006 1.006 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.264 1.264 12 C -0.037 4.037 13 C -0.122 4.122 14 C -0.083 4.083 15 C -0.136 4.136 16 C 0.129 3.871 17 N -0.333 5.333 18 C 0.266 3.734 19 N -0.561 5.561 20 C 0.201 3.799 21 N -0.363 5.363 22 C -0.142 4.142 23 H 0.059 0.941 24 H 0.021 0.979 25 H 0.042 0.958 26 H 0.262 0.738 27 H 0.126 0.874 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.269 0.731 31 H 0.251 0.749 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 -7.327 -14.227 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 H 0.012 0.988 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.189 1.189 12 C -0.038 4.038 13 C -0.140 4.140 14 C -0.102 4.102 15 C -0.157 4.157 16 C 0.038 3.962 17 N -0.117 5.117 18 C -0.028 4.028 19 N -0.288 5.288 20 C -0.101 4.101 21 N -0.189 5.189 22 C -0.162 4.162 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.190 0.810 29 H 0.192 0.808 30 H 0.284 0.716 31 H 0.267 0.733 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.889 -6.699 -13.826 15.848 hybrid contribution 0.165 0.308 1.318 1.364 sum 4.053 -6.391 -12.508 14.619 Atomic orbital electron populations 1.21613 0.96818 0.99781 0.99590 1.17767 0.93565 0.93619 0.89988 0.98830 1.21330 1.31326 1.12496 0.90843 0.92549 1.25751 0.95183 0.95663 1.01937 1.70015 1.37483 1.24077 1.24160 0.85630 0.78508 0.79103 0.78561 1.20201 1.21014 1.18881 1.20302 0.93814 0.95183 0.94485 1.21317 1.00681 0.93578 0.98451 1.21369 0.95521 1.01209 0.92051 1.21092 1.01549 0.90208 1.02818 1.17735 0.95813 0.92623 0.90066 1.47782 1.37122 1.10833 1.15932 1.27116 0.91238 1.01604 0.82832 1.70658 1.23689 1.01694 1.32776 1.26805 0.96437 0.99745 0.87085 1.78201 1.19108 0.96050 1.25514 1.20714 1.00851 1.00113 0.94567 0.92247 0.95994 0.93933 0.92885 0.85555 0.80957 0.80804 0.71581 0.73327 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.78 71.98 0.63 -5.17 16 2 C 0.07 3.53 2.48 -12.29 -0.03 3.50 16 3 H -0.01 -0.38 7.87 -2.39 -0.02 -0.40 16 4 C -0.52 -28.39 8.24 25.60 0.21 -28.18 16 5 H 0.06 3.00 7.60 -2.91 -0.02 2.98 16 6 C 0.01 0.74 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.75 16 8 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 12 C -0.04 -1.57 4.73 -19.88 -0.09 -1.67 16 13 C -0.12 -4.20 8.71 22.29 0.19 -4.00 16 14 C -0.08 -2.03 10.04 22.25 0.22 -1.81 16 15 C -0.14 -3.14 9.47 22.38 0.21 -2.93 16 16 C 0.13 4.12 6.69 38.09 0.25 4.38 16 17 N -0.33 -10.00 3.82 -191.26 -0.73 -10.73 16 18 C 0.27 5.87 11.98 180.26 2.16 8.03 16 19 N -0.56 -14.15 11.19 -203.73 -2.28 -16.43 16 20 C 0.20 5.25 13.03 180.75 2.35 7.61 16 21 N -0.36 -12.11 12.07 -61.21 -0.74 -12.85 16 22 C -0.14 -5.76 9.31 22.39 0.21 -5.55 16 23 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 24 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.04 1.89 7.39 -2.39 -0.02 1.87 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.13 4.39 7.57 -2.91 -0.02 4.37 16 28 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 29 H 0.17 2.14 6.83 -2.91 -0.02 2.12 16 30 H 0.27 2.67 7.13 -2.91 -0.02 2.65 16 31 H 0.25 4.32 8.06 -2.91 -0.02 4.29 16 32 H 0.10 4.56 7.64 -2.91 -0.02 4.54 16 Total: -1.00 -70.02 278.67 6.42 -63.60 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.13 Total: 8.60 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 6.77 Total: -24.60 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -3.51 Total: -92.76 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -70.02 6.42 -63.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.382 kcal (2) G-P(sol) polarization free energy of solvation -70.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds