Wall clock time and date at job start Mon Mar 30 2020 05:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 C 1.50696 * 109.46986 * 239.99850 * 2 1 3 5 5 H 1.08003 * 120.00149 * 240.00129 * 4 2 1 6 6 C 1.37877 * 120.00074 * 59.99798 * 4 2 1 7 7 N 1.31511 * 119.99807 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99840 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47632 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46855 * 120.00706 * 8 6 4 11 11 H 1.48500 * 109.47371 * 240.00320 * 8 6 4 12 12 C 1.50703 * 109.47036 * 120.00127 * 2 1 3 13 13 C 1.38298 * 119.96911 * 59.97259 * 12 2 1 14 14 C 1.38259 * 120.13397 * 180.02562 * 13 12 2 15 15 C 1.38141 * 120.06813 * 359.74932 * 14 13 12 16 16 C 1.38814 * 119.92868 * 0.50605 * 15 14 13 17 17 N 1.40202 * 120.06476 * 179.77404 * 16 15 14 18 18 C 1.34718 * 126.84060 * 359.71592 * 17 16 15 19 19 N 1.30859 * 108.03171 * 180.02562 * 18 17 16 20 20 C 1.33262 * 109.84086 * 359.97438 * 19 18 17 21 21 N 1.30745 * 109.00173 * 0.23320 * 20 19 18 22 22 C 1.38105 * 119.96659 * 240.00005 * 12 2 1 23 23 H 1.09003 * 109.46829 * 300.00279 * 1 2 3 24 24 H 1.08994 * 109.46918 * 59.99824 * 1 2 3 25 25 H 1.09002 * 109.47227 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00060 * 179.97438 * 7 6 4 27 27 H 1.08000 * 119.93161 * 0.02562 * 13 12 2 28 28 H 1.07995 * 119.96525 * 180.02562 * 14 13 12 29 29 H 1.08000 * 120.04035 * 180.27892 * 15 14 13 30 30 H 1.08003 * 125.98598 * 0.04308 * 18 17 16 31 31 H 1.08002 * 125.49468 * 179.97438 * 20 19 18 32 32 H 1.07996 * 120.02842 * 359.95380 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3224 -1.1197 -4.0078 9 1 3.1473 -2.2865 -3.6037 10 1 1.1676 -1.5867 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 6 2.0323 -0.7105 1.2305 13 6 1.6974 -2.0343 1.4489 14 6 2.1559 -2.6893 2.5769 15 6 2.9547 -2.0241 3.4868 16 6 3.2882 -0.6937 3.2729 17 7 4.0948 -0.0145 4.1969 18 6 4.6149 -0.5133 5.3352 19 7 5.3054 0.4352 5.9147 20 6 5.2509 1.5468 5.1816 21 7 4.5177 1.3227 4.1225 22 6 2.8263 -0.0386 2.1391 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 0.7094 1.1617 -3.4844 27 1 1.0763 -2.5576 0.7370 28 1 1.8930 -3.7232 2.7446 29 1 3.3163 -2.5375 4.3655 30 1 4.4849 -1.5198 5.7046 31 1 5.7312 2.4829 5.4254 32 1 3.0877 0.9951 1.9678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260156135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:00 Heat of formation + Delta-G solvation = 111.686229 kcal Electronic energy + Delta-G solvation = -16468.497824 eV Core-core repulsion = 13816.858079 eV Total energy + Delta-G solvation = -2651.639744 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20619 -39.00976 -35.03064 -33.41169 -31.68143 -31.12610 -29.59775 -28.12784 -25.21486 -23.98275 -23.06258 -21.74580 -20.95361 -19.82024 -17.58904 -16.30432 -15.84118 -15.72073 -15.35377 -14.71634 -14.52870 -14.09149 -13.53229 -13.02386 -12.79314 -12.52756 -12.05839 -11.66606 -11.32279 -11.16456 -11.00829 -10.92620 -10.52196 -10.28953 -10.20665 -10.05062 -9.84523 -9.57908 -9.12960 -8.46065 -8.27640 -7.92460 -6.09002 -4.16561 0.98597 1.77996 2.29036 2.32368 2.91701 3.24364 3.32985 3.36604 4.19402 4.22943 4.38870 4.58321 4.87829 5.13319 5.22287 5.27517 5.68119 5.77260 5.82135 5.98501 6.24732 6.40145 6.40907 6.62798 6.71861 6.79265 6.84491 7.04234 7.12399 7.17541 7.43032 7.62905 7.84429 7.99800 8.03330 8.27731 8.85871 9.48724 10.96816 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.005566 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.976736 B = 5029.180672 C = 5280.631745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 H 0.038 0.962 4 C -0.510 4.510 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.010 4.010 13 C -0.108 4.108 14 C -0.102 4.102 15 C -0.157 4.157 16 C 0.129 3.871 17 N -0.314 5.314 18 C 0.251 3.749 19 N -0.546 5.546 20 C 0.193 3.807 21 N -0.309 5.309 22 C -0.116 4.116 23 H 0.009 0.991 24 H 0.087 0.913 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.219 0.781 31 H 0.220 0.780 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -4.439 12.016 13.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 H 0.056 0.944 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.010 4.010 13 C -0.126 4.126 14 C -0.121 4.121 15 C -0.178 4.178 16 C 0.038 3.962 17 N -0.097 5.097 18 C -0.044 4.044 19 N -0.273 5.273 20 C -0.109 4.109 21 N -0.135 5.135 22 C -0.136 4.136 23 H 0.028 0.972 24 H 0.106 0.894 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.235 0.765 31 H 0.236 0.764 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.154 -3.799 11.635 12.640 hybrid contribution 0.345 -0.614 -0.826 1.086 sum 3.499 -4.413 10.809 12.189 Atomic orbital electron populations 1.21795 0.97234 0.99437 1.00521 1.17961 0.93105 0.95667 0.88196 0.94438 1.21099 1.31488 1.12532 0.89694 0.92298 1.24956 0.94936 0.94956 0.99016 1.69889 1.36486 1.22738 1.23497 0.86504 0.78682 0.79727 0.82936 1.19723 1.20929 1.20957 1.20685 0.91522 0.93702 0.95117 1.21280 0.99895 0.94799 0.96647 1.20913 0.97431 0.99543 0.94234 1.20515 1.03576 0.91946 1.01781 1.17609 0.96259 0.91535 0.90819 1.47763 1.36251 1.08421 1.17299 1.26068 0.92792 1.00597 0.84940 1.70578 1.24412 1.00253 1.32091 1.26099 0.97095 0.98646 0.89090 1.78204 1.18688 0.93102 1.23505 1.20960 0.99226 1.01005 0.92432 0.97158 0.89408 0.95095 0.92865 0.85085 0.85621 0.86166 0.76457 0.76416 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.78 37.16 0.33 -2.72 16 2 C 0.07 1.66 2.48 -92.92 -0.23 1.43 16 3 H 0.04 0.99 7.87 -51.93 -0.41 0.58 16 4 C -0.51 -13.37 8.24 -34.44 -0.28 -13.65 16 5 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.56 11.32 55.43 0.63 -23.94 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C -0.01 -0.20 4.73 -104.65 -0.50 -0.69 16 13 C -0.11 -1.92 8.71 -39.55 -0.34 -2.27 16 14 C -0.10 -1.47 10.04 -39.61 -0.40 -1.87 16 15 C -0.16 -2.19 9.47 -39.40 -0.37 -2.56 16 16 C 0.13 2.16 6.70 -83.59 -0.56 1.60 16 17 N -0.31 -4.99 3.82 -11.80 -0.05 -5.04 16 18 C 0.25 3.26 11.98 -90.37 -1.08 2.17 16 19 N -0.55 -7.65 11.19 -15.74 -0.18 -7.83 16 20 C 0.19 2.65 13.03 -91.77 -1.20 1.46 16 21 N -0.31 -5.15 12.06 29.30 0.35 -4.80 16 22 C -0.12 -2.26 9.31 -39.40 -0.37 -2.63 16 23 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 25 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.13 2.33 7.57 -52.49 -0.40 1.93 16 28 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.21 6.81 -52.49 -0.36 0.85 16 30 H 0.22 1.80 7.10 -52.48 -0.37 1.43 16 31 H 0.22 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.13 2.70 7.63 -52.49 -0.40 2.30 16 LS Contribution 278.61 15.07 4.20 4.20 Total: -1.00 -30.03 278.61 -8.60 -38.63 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.44 Total: 1.26 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -5.10 Total: -18.14 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.76 Total: -41.60 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.03 -8.60 -38.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.313 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds