Wall clock time and date at job start Mon Mar 30 2020 05:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 C 1.50696 * 109.46986 * 239.99850 * 2 1 3 5 5 H 1.08003 * 120.00149 * 240.00129 * 4 2 1 6 6 C 1.37877 * 120.00074 * 59.99798 * 4 2 1 7 7 N 1.31511 * 119.99807 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99840 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47632 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46855 * 120.00706 * 8 6 4 11 11 H 1.48500 * 109.47371 * 240.00320 * 8 6 4 12 12 C 1.50703 * 109.47036 * 120.00127 * 2 1 3 13 13 C 1.38298 * 119.96911 * 59.97259 * 12 2 1 14 14 C 1.38259 * 120.13397 * 180.02562 * 13 12 2 15 15 C 1.38141 * 120.06813 * 359.74932 * 14 13 12 16 16 C 1.38814 * 119.92868 * 0.50605 * 15 14 13 17 17 N 1.40202 * 120.06476 * 179.77404 * 16 15 14 18 18 C 1.34718 * 126.84060 * 359.71592 * 17 16 15 19 19 N 1.30859 * 108.03171 * 180.02562 * 18 17 16 20 20 C 1.33262 * 109.84086 * 359.97438 * 19 18 17 21 21 N 1.30745 * 109.00173 * 0.23320 * 20 19 18 22 22 C 1.38105 * 119.96659 * 240.00005 * 12 2 1 23 23 H 1.09003 * 109.46829 * 300.00279 * 1 2 3 24 24 H 1.08994 * 109.46918 * 59.99824 * 1 2 3 25 25 H 1.09002 * 109.47227 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00060 * 179.97438 * 7 6 4 27 27 H 1.08000 * 119.93161 * 0.02562 * 13 12 2 28 28 H 1.07995 * 119.96525 * 180.02562 * 14 13 12 29 29 H 1.08000 * 120.04035 * 180.27892 * 15 14 13 30 30 H 1.08003 * 125.98598 * 0.04308 * 18 17 16 31 31 H 1.08002 * 125.49468 * 179.97438 * 20 19 18 32 32 H 1.07996 * 120.02842 * 359.95380 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3224 -1.1197 -4.0078 9 1 3.1473 -2.2865 -3.6037 10 1 1.1676 -1.5867 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 6 2.0323 -0.7105 1.2305 13 6 1.6974 -2.0343 1.4489 14 6 2.1559 -2.6893 2.5769 15 6 2.9547 -2.0241 3.4868 16 6 3.2882 -0.6937 3.2729 17 7 4.0948 -0.0145 4.1969 18 6 4.6149 -0.5133 5.3352 19 7 5.3054 0.4352 5.9147 20 6 5.2509 1.5468 5.1816 21 7 4.5177 1.3227 4.1225 22 6 2.8263 -0.0386 2.1391 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 0.7094 1.1617 -3.4844 27 1 1.0763 -2.5576 0.7370 28 1 1.8930 -3.7232 2.7446 29 1 3.3163 -2.5375 4.3655 30 1 4.4849 -1.5198 5.7046 31 1 5.7312 2.4829 5.4254 32 1 3.0877 0.9951 1.9678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:59 Heat of formation + Delta-G solvation = 96.665151 kcal Electronic energy + Delta-G solvation = -16469.149186 eV Core-core repulsion = 13816.858079 eV Total energy + Delta-G solvation = -2652.291107 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.29056 -40.34016 -36.66147 -34.82722 -33.27033 -32.35710 -30.98444 -29.56342 -27.24134 -25.19295 -24.40388 -23.12193 -22.14601 -21.22803 -18.94256 -18.16813 -17.11198 -16.84388 -16.73828 -16.32130 -15.96480 -15.10697 -14.91781 -14.63060 -14.27719 -13.99184 -13.45631 -13.23900 -12.91933 -12.82350 -12.76622 -12.48514 -12.20783 -12.08488 -11.66422 -11.32388 -11.15015 -11.01831 -10.96898 -10.50644 -9.67180 -9.21530 -8.12369 -6.27003 -0.17780 0.48808 1.10419 1.23123 1.40042 1.42420 1.53459 1.88876 2.41275 2.90409 3.16163 3.36059 3.48061 3.88782 4.05315 4.12989 4.34710 4.51225 4.55879 4.69629 4.87063 4.92326 5.08304 5.17731 5.23743 5.36510 5.41260 5.47867 5.51063 5.65856 5.79073 6.02903 6.04605 6.16553 6.30958 6.81983 6.96821 7.41422 8.92821 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.005566 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.976736 B = 5029.180672 C = 5280.631745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.069 3.931 3 H -0.006 1.006 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.285 1.285 12 C -0.037 4.037 13 C -0.122 4.122 14 C -0.083 4.083 15 C -0.137 4.137 16 C 0.130 3.870 17 N -0.333 5.333 18 C 0.266 3.734 19 N -0.561 5.561 20 C 0.201 3.799 21 N -0.362 5.362 22 C -0.142 4.142 23 H 0.021 0.979 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.262 0.738 27 H 0.127 0.873 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.269 0.731 31 H 0.251 0.749 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 -7.383 14.156 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 H 0.012 0.988 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.202 1.202 11 H -0.211 1.211 12 C -0.038 4.038 13 C -0.141 4.141 14 C -0.101 4.101 15 C -0.157 4.157 16 C 0.038 3.962 17 N -0.117 5.117 18 C -0.028 4.028 19 N -0.288 5.288 20 C -0.101 4.101 21 N -0.189 5.189 22 C -0.163 4.163 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.190 0.810 29 H 0.192 0.808 30 H 0.284 0.716 31 H 0.267 0.733 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.041 -6.742 13.788 15.871 hybrid contribution 0.143 0.322 -1.329 1.375 sum 4.184 -6.419 12.459 14.626 Atomic orbital electron populations 1.21616 0.96826 0.99785 0.99581 1.17777 0.93562 0.93640 0.90016 0.98804 1.21386 1.31149 1.12407 0.90813 0.92528 1.25755 0.95207 0.95672 1.01961 1.70030 1.37646 1.24088 1.24036 0.85516 0.78246 0.78665 0.79322 1.18945 1.20186 1.21099 1.20301 0.93848 0.95171 0.94457 1.21317 1.00695 0.93603 0.98439 1.21367 0.95469 1.01223 0.92087 1.21093 1.01476 0.90296 1.02832 1.17738 0.95904 0.92630 0.89952 1.47782 1.37228 1.08418 1.18233 1.27114 0.90490 1.02011 0.83185 1.70658 1.25155 1.00624 1.32378 1.26807 0.95592 0.99754 0.87915 1.78197 1.20642 0.94521 1.25496 1.20712 1.00985 1.00090 0.94478 0.96016 0.92252 0.93915 0.92898 0.85543 0.80960 0.80795 0.71589 0.73321 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.78 71.98 0.63 -5.18 16 2 C 0.07 3.50 2.48 -12.29 -0.03 3.47 16 3 H -0.01 -0.36 7.87 -2.39 -0.02 -0.38 16 4 C -0.52 -28.23 8.24 25.60 0.21 -28.02 16 5 H 0.06 3.02 7.60 -2.91 -0.02 3.00 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -53.01 11.32 21.45 0.24 -52.76 16 8 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 C -0.04 -1.57 4.73 -19.88 -0.09 -1.66 16 13 C -0.12 -4.21 8.71 22.29 0.19 -4.01 16 14 C -0.08 -2.03 10.04 22.25 0.22 -1.81 16 15 C -0.14 -3.15 9.47 22.38 0.21 -2.94 16 16 C 0.13 4.13 6.70 38.09 0.26 4.38 16 17 N -0.33 -9.99 3.82 -191.26 -0.73 -10.72 16 18 C 0.27 5.87 11.98 180.26 2.16 8.03 16 19 N -0.56 -14.14 11.19 -203.73 -2.28 -16.42 16 20 C 0.20 5.25 13.03 180.75 2.35 7.60 16 21 N -0.36 -12.08 12.06 -61.21 -0.74 -12.82 16 22 C -0.14 -5.76 9.31 22.39 0.21 -5.55 16 23 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 25 H 0.04 1.89 7.38 -2.39 -0.02 1.88 16 26 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.13 4.39 7.57 -2.91 -0.02 4.37 16 28 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 29 H 0.17 2.14 6.81 -2.91 -0.02 2.12 16 30 H 0.27 2.67 7.10 -2.91 -0.02 2.65 16 31 H 0.25 4.31 8.06 -2.91 -0.02 4.28 16 32 H 0.10 4.57 7.63 -2.91 -0.02 4.54 16 Total: -1.00 -70.08 278.61 6.42 -63.66 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 1.13 Total: 8.44 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 6.77 Total: -24.54 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.51 Total: -92.73 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -70.08 6.42 -63.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.321 kcal (2) G-P(sol) polarization free energy of solvation -70.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds