Wall clock time and date at job start Mon Mar 30 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47184 * 2 1 4 4 C 1.50694 * 109.47330 * 120.00545 * 2 1 3 5 5 H 1.08001 * 120.00272 * 119.99364 * 4 2 1 6 6 C 1.37878 * 120.00162 * 299.99737 * 4 2 1 7 7 N 1.31511 * 119.99627 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47048 * 60.00032 * 8 6 4 10 10 H 1.48500 * 109.47176 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47273 * 300.00038 * 8 6 4 12 12 C 1.50708 * 109.46539 * 240.00305 * 2 1 3 13 13 C 1.38136 * 120.03508 * 280.16097 * 12 2 1 14 14 C 1.38257 * 120.06652 * 180.28090 * 13 12 2 15 15 C 1.38303 * 120.13129 * 359.74634 * 14 13 12 16 16 C 1.38092 * 120.06474 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.03012 * 99.93655 * 12 2 1 18 18 N 1.40193 * 120.06649 * 359.97438 * 17 12 2 19 19 C 1.34732 * 126.84264 * 160.82223 * 18 17 12 20 20 N 1.30838 * 108.03376 * 180.02562 * 19 18 17 21 21 C 1.33262 * 109.84944 * 359.97438 * 20 19 18 22 22 N 1.30755 * 108.99241 * 0.23171 * 21 20 19 23 23 H 1.09002 * 109.47152 * 59.98980 * 1 2 3 24 24 H 1.08994 * 109.47184 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46809 * 299.99671 * 1 2 3 26 26 H 0.97005 * 120.00273 * 179.97438 * 7 6 4 27 27 H 1.08003 * 119.96737 * 0.05353 * 13 12 2 28 28 H 1.07997 * 119.93228 * 179.72843 * 14 13 12 29 29 H 1.07997 * 119.96405 * 179.97438 * 15 14 13 30 30 H 1.08006 * 120.03139 * 179.97438 * 16 15 14 31 31 H 1.08004 * 125.97843 * 0.03209 * 19 18 17 32 32 H 1.07998 * 125.50287 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8294 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1213 4.0080 10 1 1.8272 -0.4202 5.2204 11 1 1.8259 -2.5205 4.0075 12 6 2.0323 -0.7104 -1.2306 13 6 2.0637 -2.0909 -1.2676 14 6 2.5298 -2.7432 -2.3940 15 6 2.9608 -2.0163 -3.4888 16 6 2.9263 -0.6361 -3.4599 17 6 2.4593 0.0219 -2.3299 18 7 2.4236 1.4230 -2.2973 19 6 3.1089 2.2673 -3.0928 20 7 2.8017 3.4906 -2.7451 21 6 1.9286 3.4692 -1.7385 22 7 1.6699 2.2262 -1.4260 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7083 1.1606 3.4845 27 1 1.7274 -2.6612 -0.4143 28 1 2.5576 -3.8226 -2.4189 29 1 3.3247 -2.5286 -4.3671 30 1 3.2634 -0.0689 -4.3150 31 1 3.7922 1.9838 -3.8797 32 1 1.5064 4.3382 -1.2559 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260156157.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:02 Heat of formation + Delta-G solvation = 126.760142 kcal Electronic energy + Delta-G solvation = -17208.513187 eV Core-core repulsion = 14557.527097 eV Total energy + Delta-G solvation = -2650.986090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86304 -38.91886 -34.47259 -33.66373 -31.57188 -30.75713 -29.21857 -28.12660 -25.11527 -23.55084 -23.18031 -21.14922 -20.86368 -19.67944 -17.67926 -16.31536 -15.68260 -15.34181 -15.01232 -14.49678 -14.28140 -13.67573 -13.47941 -13.00348 -12.67685 -12.64624 -11.74626 -11.52123 -11.23641 -10.99912 -10.83047 -10.78401 -10.38376 -10.29557 -10.09099 -9.67547 -9.51325 -9.37540 -8.68205 -8.34377 -8.17502 -7.75520 -5.97290 -4.03968 1.22644 1.83748 2.45806 2.70850 3.29824 3.31869 3.35581 3.37423 4.21514 4.43435 4.56707 4.94804 5.17054 5.21386 5.32932 5.35168 5.59248 5.80189 5.98615 6.09392 6.40168 6.60550 6.73429 6.78259 6.81695 6.95520 7.06280 7.16932 7.26050 7.36156 7.57479 7.75375 8.13361 8.19034 8.42206 8.44417 8.98535 9.58748 11.07836 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.009632 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.589004 B = 2906.225886 C = 3906.009880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.060 3.940 3 H 0.078 0.922 4 C -0.518 4.518 5 H 0.055 0.945 6 C 0.064 3.936 7 N -0.882 5.882 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.020 4.020 13 C -0.093 4.093 14 C -0.125 4.125 15 C -0.127 4.127 16 C -0.133 4.133 17 C 0.116 3.884 18 N -0.314 5.314 19 C 0.237 3.763 20 N -0.545 5.545 21 C 0.174 3.826 22 N -0.260 5.260 23 H 0.009 0.991 24 H 0.018 0.982 25 H 0.085 0.915 26 H 0.260 0.740 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.214 0.786 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 -2.188 -10.979 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.042 3.958 3 H 0.095 0.905 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.022 4.022 13 C -0.112 4.112 14 C -0.144 4.144 15 C -0.146 4.146 16 C -0.154 4.154 17 C 0.024 3.976 18 N -0.098 5.098 19 C -0.058 4.058 20 N -0.272 5.272 21 C -0.127 4.127 22 N -0.085 5.085 23 H 0.028 0.972 24 H 0.037 0.963 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.155 0.845 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.230 0.770 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.465 -1.944 -10.402 10.866 hybrid contribution 0.553 -0.618 0.766 1.129 sum 3.018 -2.562 -9.636 10.418 Atomic orbital electron populations 1.21574 0.96966 0.98243 1.00465 1.18324 0.93177 0.97483 0.86859 0.90457 1.21195 1.31501 1.12529 0.90388 0.92640 1.24923 0.95091 0.94990 0.98747 1.69900 1.36258 1.22590 1.23295 0.86713 0.79173 0.79802 0.82628 1.20413 1.21270 1.20287 1.20722 0.92898 0.93787 0.94823 1.21195 0.98304 0.93784 0.97877 1.21259 0.99535 0.99748 0.93808 1.20710 1.02348 0.92645 0.98889 1.20649 1.03614 0.95087 0.96065 1.17650 1.05593 0.77949 0.96372 1.47760 1.31710 1.05526 1.24800 1.25951 0.97531 0.85298 0.96989 1.70497 1.18481 1.21275 1.16953 1.26222 0.96244 0.96037 0.94239 1.78751 1.16180 1.02261 1.11293 0.97199 0.96266 0.89629 0.92996 0.84543 0.86240 0.85951 0.86140 0.77013 0.76833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.86 8.78 37.16 0.33 -2.53 16 2 C 0.06 1.51 1.78 -92.92 -0.17 1.34 16 3 H 0.08 2.13 4.99 -51.93 -0.26 1.87 16 4 C -0.52 -14.04 7.89 -34.44 -0.27 -14.31 16 5 H 0.06 1.47 6.68 -52.49 -0.35 1.12 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C -0.02 -0.43 4.84 -104.44 -0.51 -0.94 16 13 C -0.09 -1.76 8.82 -39.61 -0.35 -2.11 16 14 C -0.12 -1.88 10.04 -39.55 -0.40 -2.27 16 15 C -0.13 -1.72 10.04 -39.61 -0.40 -2.12 16 16 C -0.13 -1.96 9.49 -39.41 -0.37 -2.34 16 17 C 0.12 2.20 6.59 -83.59 -0.55 1.65 16 18 N -0.31 -5.99 3.69 -11.81 -0.04 -6.04 16 19 C 0.24 3.76 11.93 -90.38 -1.08 2.68 16 20 N -0.55 -9.41 11.19 -15.74 -0.18 -9.59 16 21 C 0.17 3.15 13.03 -91.76 -1.20 1.96 16 22 N -0.26 -5.51 8.74 29.30 0.26 -5.25 16 23 H 0.01 0.22 8.00 -51.93 -0.42 -0.20 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.14 2.65 7.10 -52.48 -0.37 2.28 16 28 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.36 7.13 -52.48 -0.37 0.98 16 31 H 0.21 2.28 7.45 -52.48 -0.39 1.88 16 32 H 0.22 3.11 8.06 -52.49 -0.42 2.69 16 LS Contribution 272.37 15.07 4.10 4.10 Total: -1.00 -31.32 272.37 -8.61 -39.93 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -3.30 Total: 2.52 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -5.05 Total: -17.32 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.66 Total: -45.43 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.32 -8.61 -39.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156157.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.687 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds