Wall clock time and date at job start Mon Mar 30 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47184 * 2 1 4 4 C 1.50694 * 109.47330 * 120.00545 * 2 1 3 5 5 H 1.08001 * 120.00272 * 119.99364 * 4 2 1 6 6 C 1.37878 * 120.00162 * 299.99737 * 4 2 1 7 7 N 1.31511 * 119.99627 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47048 * 60.00032 * 8 6 4 10 10 H 1.48500 * 109.47176 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47273 * 300.00038 * 8 6 4 12 12 C 1.50708 * 109.46539 * 240.00305 * 2 1 3 13 13 C 1.38136 * 120.03508 * 280.16097 * 12 2 1 14 14 C 1.38257 * 120.06652 * 180.28090 * 13 12 2 15 15 C 1.38303 * 120.13129 * 359.74634 * 14 13 12 16 16 C 1.38092 * 120.06474 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.03012 * 99.93655 * 12 2 1 18 18 N 1.40193 * 120.06649 * 359.97438 * 17 12 2 19 19 C 1.34732 * 126.84264 * 160.82223 * 18 17 12 20 20 N 1.30838 * 108.03376 * 180.02562 * 19 18 17 21 21 C 1.33262 * 109.84944 * 359.97438 * 20 19 18 22 22 N 1.30755 * 108.99241 * 0.23171 * 21 20 19 23 23 H 1.09002 * 109.47152 * 59.98980 * 1 2 3 24 24 H 1.08994 * 109.47184 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46809 * 299.99671 * 1 2 3 26 26 H 0.97005 * 120.00273 * 179.97438 * 7 6 4 27 27 H 1.08003 * 119.96737 * 0.05353 * 13 12 2 28 28 H 1.07997 * 119.93228 * 179.72843 * 14 13 12 29 29 H 1.07997 * 119.96405 * 179.97438 * 15 14 13 30 30 H 1.08006 * 120.03139 * 179.97438 * 16 15 14 31 31 H 1.08004 * 125.97843 * 0.03209 * 19 18 17 32 32 H 1.07998 * 125.50287 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8294 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1213 4.0080 10 1 1.8272 -0.4202 5.2204 11 1 1.8259 -2.5205 4.0075 12 6 2.0323 -0.7104 -1.2306 13 6 2.0637 -2.0909 -1.2676 14 6 2.5298 -2.7432 -2.3940 15 6 2.9608 -2.0163 -3.4888 16 6 2.9263 -0.6361 -3.4599 17 6 2.4593 0.0219 -2.3299 18 7 2.4236 1.4230 -2.2973 19 6 3.1089 2.2673 -3.0928 20 7 2.8017 3.4906 -2.7451 21 6 1.9286 3.4692 -1.7385 22 7 1.6699 2.2262 -1.4260 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7083 1.1606 3.4845 27 1 1.7274 -2.6612 -0.4143 28 1 2.5576 -3.8226 -2.4189 29 1 3.3247 -2.5286 -4.3671 30 1 3.2634 -0.0689 -4.3150 31 1 3.7922 1.9838 -3.8797 32 1 1.5064 4.3382 -1.2559 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156157.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:02 Heat of formation + Delta-G solvation = 110.608204 kcal Electronic energy + Delta-G solvation = -17209.213587 eV Core-core repulsion = 14557.527097 eV Total energy + Delta-G solvation = -2651.686491 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.19649 -40.24030 -36.27063 -34.98471 -33.37595 -32.16536 -30.55991 -29.67047 -27.20234 -24.87126 -24.63401 -22.68612 -22.14240 -21.23308 -18.97210 -18.24806 -17.09039 -16.76641 -16.51691 -16.12536 -15.59122 -14.96835 -14.80702 -14.62309 -14.42128 -14.08432 -13.37334 -13.01380 -12.93604 -12.74001 -12.69283 -12.41439 -12.14090 -12.01559 -11.61876 -11.28352 -11.10599 -10.91431 -10.62986 -10.14865 -9.59731 -9.11995 -8.05997 -6.18816 -0.03775 0.56850 1.17028 1.38348 1.39358 1.43923 1.46858 1.98721 2.41771 2.93831 3.21266 3.43539 3.68157 3.99378 4.09803 4.24228 4.37383 4.58875 4.69541 4.78571 4.94287 5.03452 5.20785 5.27404 5.38574 5.45940 5.51778 5.54112 5.61166 5.71858 5.96350 6.06439 6.20209 6.35438 6.41710 6.93307 7.10835 7.46569 8.98103 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.009632 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.589004 B = 2906.225886 C = 3906.009880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.061 3.939 3 H 0.053 0.947 4 C -0.529 4.529 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.913 5.913 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C -0.065 4.065 13 C -0.115 4.115 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.121 4.121 17 C 0.096 3.904 18 N -0.327 5.327 19 C 0.251 3.749 20 N -0.559 5.559 21 C 0.173 3.827 22 N -0.320 5.320 23 H 0.010 0.990 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.258 0.742 27 H 0.115 0.885 28 H 0.153 0.847 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.266 0.734 32 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 -3.703 -13.691 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.042 3.958 3 H 0.070 0.930 4 C -0.567 4.567 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.552 5.552 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.067 4.067 13 C -0.134 4.134 14 C -0.134 4.134 15 C -0.126 4.126 16 C -0.141 4.141 17 C 0.005 3.995 18 N -0.111 5.111 19 C -0.043 4.043 20 N -0.286 5.286 21 C -0.128 4.128 22 N -0.145 5.145 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.171 0.829 29 H 0.191 0.809 30 H 0.182 0.818 31 H 0.282 0.718 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.337 -3.477 -13.122 14.250 hybrid contribution 0.018 -0.165 1.461 1.470 sum 4.355 -3.641 -11.660 12.969 Atomic orbital electron populations 1.21343 0.97952 0.97367 0.98843 1.18064 0.92564 0.96619 0.88525 0.92964 1.21580 1.31050 1.12383 0.91678 0.92779 1.25712 0.95487 0.95769 1.01687 1.70059 1.37546 1.24002 1.23584 0.85739 0.78566 0.79008 0.79093 1.20090 1.21121 1.19316 1.20455 0.96505 0.94959 0.94752 1.21129 1.00114 0.92926 0.99220 1.21611 0.97697 1.01542 0.92598 1.21320 0.99547 0.92191 0.99526 1.21177 1.01510 0.95950 0.95502 1.17980 1.06471 0.77927 0.97152 1.47826 1.32260 1.05869 1.25178 1.26998 0.96417 0.84302 0.96534 1.70541 1.18740 1.22250 1.17027 1.26703 0.95919 0.95991 0.94201 1.78661 1.18624 1.03616 1.13631 0.97106 0.96499 0.92658 0.93287 0.86657 0.82911 0.80897 0.81757 0.71831 0.74858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.14 8.78 71.98 0.63 -4.51 16 2 C 0.06 3.21 1.78 -12.28 -0.02 3.19 16 3 H 0.05 3.05 4.99 -2.39 -0.01 3.04 16 4 C -0.53 -29.83 7.89 25.60 0.20 -29.63 16 5 H 0.05 2.97 6.68 -2.91 -0.02 2.95 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.91 -54.56 11.32 21.45 0.24 -54.32 16 8 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 C -0.06 -2.81 4.84 -19.75 -0.10 -2.91 16 13 C -0.12 -4.33 8.82 22.25 0.20 -4.14 16 14 C -0.12 -3.08 10.04 22.29 0.22 -2.86 16 15 C -0.11 -2.31 10.04 22.25 0.22 -2.08 16 16 C -0.12 -3.00 9.49 22.38 0.21 -2.79 16 17 C 0.10 3.51 6.59 38.09 0.25 3.77 16 18 N -0.33 -12.25 3.69 -191.27 -0.71 -12.96 16 19 C 0.25 7.32 11.93 180.26 2.15 9.47 16 20 N -0.56 -18.57 11.19 -203.73 -2.28 -20.85 16 21 C 0.17 6.36 13.03 180.75 2.35 8.72 16 22 N -0.32 -13.98 8.74 -61.21 -0.53 -14.51 16 23 H 0.01 0.51 8.00 -2.39 -0.02 0.49 16 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 3.21 6.07 -2.38 -0.01 3.20 16 26 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 27 H 0.12 4.65 7.10 -2.91 -0.02 4.63 16 28 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.16 2.57 7.13 -2.91 -0.02 2.55 16 31 H 0.27 4.29 7.45 -2.91 -0.02 4.27 16 32 H 0.24 7.00 8.06 -2.91 -0.02 6.98 16 Total: -1.00 -73.23 272.37 6.66 -66.57 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.13 Total: 11.98 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 6.78 Total: -22.63 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -3.28 Total: -102.64 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.23 6.66 -66.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156157.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.183 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds