Wall clock time and date at job start Mon Mar 30 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38285 * 119.92311 * 269.73082 * 10 9 7 12 12 C 1.38107 * 120.06832 * 179.72298 * 11 10 9 13 13 C 1.38910 * 119.92810 * 0.54740 * 12 11 10 14 14 N 1.39671 * 120.07858 * 179.74520 * 13 12 11 15 15 C 1.49603 * 111.00547 * 248.51340 * 14 13 12 16 16 C 1.56748 * 99.23646 * 117.88704 * 15 14 13 17 17 C 1.55143 * 101.82974 * 43.31097 * 16 15 14 18 18 C 1.50238 * 110.99824 * 359.97438 * 14 13 12 19 19 C 1.55706 * 108.30925 * 284.62358 * 18 14 13 20 20 C 1.38908 * 119.84884 * 359.72923 * 13 12 11 21 21 C 1.38103 * 119.92866 * 359.97438 * 20 13 12 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.07996 * 119.96896 * 359.97438 * 11 10 9 26 26 H 1.07999 * 120.03546 * 180.27114 * 12 11 10 27 27 H 1.08999 * 111.44609 * 235.39817 * 15 14 13 28 28 H 1.09002 * 111.44259 * 0.38297 * 15 14 13 29 29 H 1.09002 * 118.43607 * 178.69678 * 16 15 14 30 30 H 1.09001 * 114.43773 * 183.28691 * 17 16 15 31 31 H 1.09001 * 114.44192 * 49.88188 * 17 16 15 32 32 H 1.09008 * 117.57649 * 63.42201 * 18 14 13 33 33 H 1.08995 * 114.52160 * 53.21104 * 19 18 14 34 34 H 1.09000 * 114.52447 * 186.89081 * 19 18 14 35 35 H 1.07998 * 120.03846 * 179.97438 * 20 13 12 36 36 H 1.07995 * 119.96768 * 180.02562 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6744 -4.1778 -1.1858 12 6 3.5762 -5.2237 -1.1848 13 6 4.0287 -5.7475 0.0196 14 7 4.9367 -6.8088 0.0243 15 6 4.2978 -8.0588 0.5413 16 6 4.4325 -8.9571 -0.7362 17 6 5.8810 -8.6429 -1.1947 18 6 5.2864 -7.2244 -1.3764 19 6 4.0868 -8.0254 -1.9628 20 6 3.5764 -5.2131 1.2194 21 6 2.6792 -4.1632 1.2112 22 1 -0.4850 0.8400 0.0004 23 1 0.6245 -2.5529 0.8956 24 1 0.6244 -2.5609 -0.8844 25 1 2.3186 -3.7733 -2.1218 26 1 3.9259 -5.6369 -2.1193 27 1 4.8557 -8.4737 1.3809 28 1 3.2529 -7.8932 0.8037 29 1 4.0685 -9.9835 -0.6897 30 1 6.1758 -9.1309 -2.1237 31 1 6.6302 -8.7203 -0.4068 32 1 5.7980 -6.4962 -2.0060 33 1 3.1272 -7.5120 -1.9023 34 1 4.2776 -8.4784 -2.9356 35 1 3.9258 -5.6182 2.1575 36 1 2.3274 -3.7470 2.1436 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260158458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:02 Heat of formation + Delta-G solvation = 87.195638 kcal Electronic energy + Delta-G solvation = -16888.930156 eV Core-core repulsion = 14339.768764 eV Total energy + Delta-G solvation = -2549.161392 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.58924 -38.23875 -34.01142 -32.55320 -30.53091 -29.91959 -27.93167 -26.13840 -25.24317 -23.19104 -22.00067 -21.29330 -19.82498 -19.29875 -17.10333 -16.28783 -15.52683 -15.21529 -14.83777 -14.25484 -14.00935 -13.88362 -13.05658 -12.81980 -12.49908 -12.37505 -11.98787 -11.88736 -11.66313 -11.35499 -11.19580 -10.93114 -10.73137 -10.68216 -10.56206 -10.30651 -10.15327 -9.65078 -9.43997 -8.99669 -8.40828 -8.28427 -7.29591 -6.02372 -4.06467 2.02516 2.06049 3.33410 3.37133 3.40844 3.80900 4.14155 4.26133 4.34259 4.41064 4.54620 4.78375 5.14829 5.31353 5.38215 5.39728 5.52348 5.54649 5.60978 5.68485 5.70959 5.79939 5.93014 5.96852 5.99538 6.02025 6.22864 6.37262 6.45991 6.66275 7.12538 7.18739 7.21104 7.31107 7.54149 7.83177 7.87885 7.93305 8.34401 8.98790 9.57351 11.07137 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.049833 B = 0.004703 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.740302 B = 5952.323544 C = 6004.605839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.049 3.951 10 C -0.047 4.047 11 C -0.108 4.108 12 C -0.157 4.157 13 C 0.053 3.947 14 N -0.444 5.444 15 C 0.040 3.960 16 C -0.145 4.145 17 C -0.138 4.138 18 C 0.032 3.968 19 C -0.168 4.168 20 C -0.126 4.126 21 C -0.108 4.108 22 H 0.262 0.738 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -16.977 -2.050 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.012 3.988 10 C -0.047 4.047 11 C -0.127 4.127 12 C -0.177 4.177 13 C -0.042 4.042 14 N -0.160 5.160 15 C -0.085 4.085 16 C -0.163 4.163 17 C -0.176 4.176 18 C -0.076 4.076 19 C -0.206 4.206 20 C -0.146 4.146 21 C -0.127 4.127 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.535 -16.682 -1.682 18.814 hybrid contribution -0.148 0.838 -0.454 0.965 sum 8.387 -15.844 -2.136 18.054 Atomic orbital electron populations 1.69946 1.06033 1.26901 1.50558 1.25005 0.94872 0.99223 0.95194 0.86603 0.79538 0.82826 0.78758 1.20173 1.21234 1.20153 1.21041 0.93036 0.89923 1.50957 0.92536 1.18332 0.92555 0.89655 0.98239 1.20676 0.96792 0.95361 0.91880 1.20975 0.97492 0.95837 0.98381 1.21315 0.99869 0.99969 0.96576 1.18850 0.95305 0.96183 0.93894 1.64090 1.34001 1.03218 1.14734 1.23858 0.99188 0.88965 0.96501 1.25001 0.97915 0.98995 0.94437 1.23794 0.96112 0.96129 1.01567 1.24614 0.97499 0.95272 0.90233 1.24878 0.99739 0.98381 0.97621 1.20652 0.99533 0.98397 0.96040 1.20979 0.97464 0.95806 0.98418 0.92809 0.95416 0.95461 0.86470 0.86476 0.89214 0.91034 0.87535 0.89332 0.90838 0.86462 0.90490 0.88670 0.86883 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.51 9.09 -34.44 -0.31 -14.83 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.28 5.10 -29.03 -0.15 1.13 16 10 C -0.05 -1.03 5.07 -104.58 -0.53 -1.56 16 11 C -0.11 -2.15 9.69 -39.61 -0.38 -2.54 16 12 C -0.16 -2.71 7.83 -39.38 -0.31 -3.02 16 13 C 0.05 0.90 5.04 -83.79 -0.42 0.47 16 14 N -0.44 -6.34 5.68 -160.42 -0.91 -7.25 16 15 C 0.04 0.48 6.70 -0.29 0.00 0.48 16 16 C -0.14 -1.43 6.45 -90.80 -0.59 -2.02 16 17 C -0.14 -1.32 7.49 -28.75 -0.22 -1.54 16 18 C 0.03 0.38 4.38 -69.41 -0.30 0.08 16 19 C -0.17 -1.78 6.91 -26.77 -0.18 -1.97 16 20 C -0.13 -2.23 9.46 -39.38 -0.37 -2.61 16 21 C -0.11 -2.16 9.69 -39.61 -0.38 -2.55 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 24 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 25 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 26 H 0.12 1.75 5.37 -52.49 -0.28 1.47 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.90 7.54 -51.93 -0.39 0.51 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.69 7.89 -51.93 -0.41 0.28 16 31 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 32 H 0.12 1.38 7.81 -51.92 -0.41 0.98 16 33 H 0.08 0.96 6.61 -51.93 -0.34 0.62 16 34 H 0.09 0.83 7.89 -51.93 -0.41 0.42 16 35 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -30.05 292.08 -10.20 -40.26 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.16 Total: 0.63 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -4.25 Total: -28.89 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: -0.17 Total: -33.14 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.05 -10.20 -40.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260158458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.452 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds