Wall clock time and date at job start Mon Mar 30 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38285 * 119.92311 * 269.73082 * 10 9 7 12 12 C 1.38107 * 120.06832 * 179.72298 * 11 10 9 13 13 C 1.38910 * 119.92810 * 0.54740 * 12 11 10 14 14 N 1.39671 * 120.07858 * 179.74520 * 13 12 11 15 15 C 1.49603 * 111.00547 * 248.51340 * 14 13 12 16 16 C 1.56748 * 99.23646 * 117.88704 * 15 14 13 17 17 C 1.55143 * 101.82974 * 43.31097 * 16 15 14 18 18 C 1.50238 * 110.99824 * 359.97438 * 14 13 12 19 19 C 1.55706 * 108.30925 * 284.62358 * 18 14 13 20 20 C 1.38908 * 119.84884 * 359.72923 * 13 12 11 21 21 C 1.38103 * 119.92866 * 359.97438 * 20 13 12 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.07996 * 119.96896 * 359.97438 * 11 10 9 26 26 H 1.07999 * 120.03546 * 180.27114 * 12 11 10 27 27 H 1.08999 * 111.44609 * 235.39817 * 15 14 13 28 28 H 1.09002 * 111.44259 * 0.38297 * 15 14 13 29 29 H 1.09002 * 118.43607 * 178.69678 * 16 15 14 30 30 H 1.09001 * 114.43773 * 183.28691 * 17 16 15 31 31 H 1.09001 * 114.44192 * 49.88188 * 17 16 15 32 32 H 1.09008 * 117.57649 * 63.42201 * 18 14 13 33 33 H 1.08995 * 114.52160 * 53.21104 * 19 18 14 34 34 H 1.09000 * 114.52447 * 186.89081 * 19 18 14 35 35 H 1.07998 * 120.03846 * 179.97438 * 20 13 12 36 36 H 1.07995 * 119.96768 * 180.02562 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6744 -4.1778 -1.1858 12 6 3.5762 -5.2237 -1.1848 13 6 4.0287 -5.7475 0.0196 14 7 4.9367 -6.8088 0.0243 15 6 4.2978 -8.0588 0.5413 16 6 4.4325 -8.9571 -0.7362 17 6 5.8810 -8.6429 -1.1947 18 6 5.2864 -7.2244 -1.3764 19 6 4.0868 -8.0254 -1.9628 20 6 3.5764 -5.2131 1.2194 21 6 2.6792 -4.1632 1.2112 22 1 -0.4850 0.8400 0.0004 23 1 0.6245 -2.5529 0.8956 24 1 0.6244 -2.5609 -0.8844 25 1 2.3186 -3.7733 -2.1218 26 1 3.9259 -5.6369 -2.1193 27 1 4.8557 -8.4737 1.3809 28 1 3.2529 -7.8932 0.8037 29 1 4.0685 -9.9835 -0.6897 30 1 6.1758 -9.1309 -2.1237 31 1 6.6302 -8.7203 -0.4068 32 1 5.7980 -6.4962 -2.0060 33 1 3.1272 -7.5120 -1.9023 34 1 4.2776 -8.4784 -2.9356 35 1 3.9258 -5.6182 2.1575 36 1 2.3274 -3.7470 2.1436 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260158458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:01 Heat of formation + Delta-G solvation = 70.459985 kcal Electronic energy + Delta-G solvation = -16889.655869 eV Core-core repulsion = 14339.768764 eV Total energy + Delta-G solvation = -2549.887105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.56589 -39.67978 -35.71837 -34.27948 -31.98631 -31.53971 -29.10812 -27.71329 -26.12251 -24.95854 -23.45416 -22.61373 -20.99872 -20.35550 -18.53290 -18.18400 -16.79152 -16.56266 -16.27585 -15.88840 -15.25394 -15.04954 -14.54924 -14.36929 -14.02572 -13.83379 -13.40921 -13.19559 -12.92580 -12.77578 -12.62074 -12.42549 -12.39277 -12.06113 -11.77036 -11.54324 -11.50914 -11.43264 -11.06657 -10.61257 -10.32788 -9.77517 -8.75123 -8.18977 -6.34637 0.53623 0.55673 1.38598 1.41443 1.49850 2.38646 2.74121 3.00561 3.09335 3.33636 3.42887 3.56471 3.86132 4.02994 4.14349 4.36326 4.37075 4.43636 4.56031 4.65263 4.75610 4.80866 4.84840 4.91047 4.96468 5.08313 5.11111 5.14081 5.15484 5.26229 5.32072 5.40831 5.56245 5.72628 5.80415 5.92325 6.08182 6.16877 6.42977 6.77649 7.33973 8.88107 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.049833 B = 0.004703 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.740302 B = 5952.323544 C = 6004.605839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.059 3.941 10 C -0.082 4.082 11 C -0.116 4.116 12 C -0.152 4.152 13 C 0.070 3.930 14 N -0.458 5.458 15 C 0.035 3.965 16 C -0.136 4.136 17 C -0.122 4.122 18 C 0.010 3.990 19 C -0.165 4.165 20 C -0.127 4.127 21 C -0.116 4.116 22 H 0.266 0.734 23 H 0.002 0.998 24 H 0.002 0.998 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.054 0.946 34 H 0.121 0.879 35 H 0.135 0.865 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.440 -18.755 -2.591 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.082 4.082 11 C -0.135 4.135 12 C -0.172 4.172 13 C -0.026 4.026 14 N -0.174 5.174 15 C -0.090 4.090 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.097 4.097 19 C -0.203 4.203 20 C -0.147 4.147 21 C -0.134 4.134 22 H 0.075 0.925 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.132 0.868 26 H 0.161 0.839 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.811 -18.486 -2.223 21.531 hybrid contribution -0.797 1.251 -0.287 1.511 sum 10.014 -17.235 -2.509 20.090 Atomic orbital electron populations 1.70069 1.07652 1.28047 1.51230 1.25920 0.95773 1.03070 0.94504 0.85502 0.78326 0.78105 0.79148 1.19285 1.20340 1.19341 1.21354 0.92993 0.91365 1.51117 0.92991 1.18061 0.92830 0.91170 0.95688 1.20371 0.98191 0.95856 0.93810 1.20992 0.98355 0.96751 0.97409 1.21506 0.98765 0.98801 0.98098 1.19073 0.94012 0.96286 0.93226 1.64070 1.32940 1.03575 1.16858 1.23963 0.98607 0.88219 0.98183 1.25010 0.98257 0.99513 0.92689 1.23775 0.95625 0.93819 1.02672 1.24822 0.99008 0.96787 0.89125 1.24940 0.97887 0.98214 0.99267 1.20822 0.98800 0.97530 0.97559 1.20972 0.98257 0.96715 0.97489 0.92512 0.97959 0.97964 0.86827 0.83923 0.87701 0.92154 0.85148 0.86769 0.91044 0.86538 0.92714 0.86092 0.84683 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.53 -31.24 9.09 25.60 0.23 -31.01 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.06 3.30 5.10 29.10 0.15 3.44 16 10 C -0.08 -3.78 5.07 -19.84 -0.10 -3.88 16 11 C -0.12 -4.75 9.69 22.25 0.22 -4.54 16 12 C -0.15 -5.11 7.83 22.40 0.18 -4.94 16 13 C 0.07 2.28 5.04 38.21 0.19 2.47 16 14 N -0.46 -11.97 5.68 -661.43 -3.75 -15.73 16 15 C 0.04 0.74 6.70 87.09 0.58 1.32 16 16 C -0.14 -2.16 6.45 -10.91 -0.07 -2.23 16 17 C -0.12 -1.80 7.49 29.28 0.22 -1.58 16 18 C 0.01 0.21 4.38 41.95 0.18 0.40 16 19 C -0.16 -2.95 6.91 30.57 0.21 -2.74 16 20 C -0.13 -4.42 9.46 22.40 0.21 -4.21 16 21 C -0.12 -4.77 9.69 22.25 0.22 -4.55 16 22 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 23 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 24 H 0.00 0.12 8.08 -2.38 -0.02 0.10 16 25 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 26 H 0.14 4.02 5.37 -2.91 -0.02 4.00 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.41 7.54 -2.39 -0.02 1.39 16 29 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 1.17 7.89 -2.39 -0.02 1.16 16 31 H 0.07 1.13 8.11 -2.39 -0.02 1.11 16 32 H 0.12 2.43 7.81 -2.38 -0.02 2.41 16 33 H 0.05 1.25 6.61 -2.39 -0.02 1.23 16 34 H 0.12 1.57 7.89 -2.39 -0.02 1.55 16 35 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -66.52 292.08 2.49 -64.03 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.05 Total: 12.50 kcal Atomic # 6 Polarization: -54.15 SS G_CDS: 2.88 Total: -51.27 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -3.47 Total: -72.43 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -66.52 2.49 -64.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260158458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.491 kcal (2) G-P(sol) polarization free energy of solvation -66.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds