Wall clock time and date at job start Mon Mar 30 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34244 * 126.50201 * 2 1 4 4 N 1.36833 * 109.93092 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.06296 * 180.02562 * 4 3 2 6 6 C 1.37692 * 109.87406 * 0.26052 * 4 3 2 7 7 C 1.39123 * 133.50455 * 180.51514 * 6 4 3 8 8 C 1.37747 * 119.78039 * 179.57602 * 7 6 4 9 9 C 1.38822 * 120.66463 * 359.67621 * 8 7 6 10 10 C 1.50706 * 119.73680 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46563 * 269.97709 * 10 9 8 12 12 C 1.50703 * 109.46671 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00027 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99857 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00083 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47054 * 60.00242 * 16 14 12 18 18 H 1.48499 * 109.47042 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47285 * 300.00083 * 16 14 12 20 20 C 1.36632 * 120.53342 * 0.02562 * 9 8 7 21 21 C 1.39629 * 119.76073 * 0.02562 * 20 9 8 22 22 H 1.08999 * 109.46665 * 90.02581 * 1 2 3 23 23 H 1.08996 * 109.47235 * 210.02475 * 1 2 3 24 24 H 1.08995 * 109.46907 * 330.02921 * 1 2 3 25 25 H 1.08003 * 125.03378 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.47391 * 90.01941 * 5 4 3 27 27 H 1.09001 * 109.46813 * 330.01997 * 5 4 3 28 28 H 1.09004 * 109.47041 * 210.02124 * 5 4 3 29 29 H 1.08006 * 120.10736 * 359.26735 * 7 6 4 30 30 H 1.08002 * 119.66380 * 179.69421 * 8 7 6 31 31 H 1.08990 * 109.46849 * 29.97197 * 10 9 8 32 32 H 1.08994 * 109.47425 * 149.97427 * 10 9 8 33 33 H 1.09001 * 109.47344 * 299.99662 * 11 10 9 34 34 H 1.08994 * 109.47480 * 59.99752 * 11 10 9 35 35 H 0.96996 * 120.00210 * 179.97438 * 15 14 12 36 36 H 1.07990 * 120.12010 * 180.02562 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6888 -0.0006 5 6 4.7657 1.5981 -0.0002 6 6 3.6964 -0.6858 -0.0069 7 6 4.7589 -1.5838 -0.0009 8 6 4.5097 -2.9386 -0.0015 9 6 3.2072 -3.4189 -0.0012 10 6 2.9586 -4.9053 -0.0013 11 6 2.8735 -5.4079 -1.4439 12 6 2.6255 -6.8944 -1.4440 13 1 2.5370 -7.4272 -0.5087 14 6 2.5106 -7.5741 -2.6381 15 7 2.6179 -6.9252 -3.7771 16 14 2.2025 -9.4165 -2.6383 17 1 0.9256 -9.7049 -1.9370 18 1 2.1201 -9.9045 -4.0384 19 1 3.3174 -10.1049 -1.9395 20 6 2.1488 -2.5548 -0.0009 21 6 2.3784 -1.1776 -0.0013 22 1 -0.3632 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 1.9635 2.1035 -0.0004 26 1 5.0510 1.8227 1.0275 27 1 4.4979 2.5219 -0.5130 28 1 5.6027 1.1263 -0.5149 29 1 5.7758 -1.2199 -0.0009 30 1 5.3360 -3.6340 -0.0019 31 1 3.7768 -5.4104 0.5118 32 1 2.0213 -5.1169 0.5131 33 1 2.0553 -4.9027 -1.9571 34 1 3.8108 -5.1963 -1.9583 35 1 2.5374 -7.4033 -4.6171 36 1 1.1383 -2.9358 -0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260163643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:39 Heat of formation + Delta-G solvation = 39.058599 kcal Electronic energy + Delta-G solvation = -16498.977052 eV Core-core repulsion = 13947.728280 eV Total energy + Delta-G solvation = -2551.248771 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04908 -37.27079 -33.63587 -33.52165 -31.62322 -29.55281 -29.02630 -27.76560 -25.29868 -24.03290 -22.29852 -21.37105 -19.81286 -19.06786 -16.57099 -16.32580 -15.95338 -15.27454 -14.62093 -14.39935 -13.72600 -13.63232 -13.27575 -13.08932 -12.74886 -12.56731 -12.30938 -12.21046 -12.05871 -11.75856 -11.41007 -11.13852 -10.86661 -10.54802 -10.45098 -10.38542 -9.70725 -9.44826 -9.08289 -9.00216 -8.27844 -7.65149 -7.14729 -5.92775 -3.95669 1.51188 2.08815 2.89445 2.97320 3.37709 3.41823 3.44426 4.34560 4.52204 4.69867 4.87973 5.03508 5.07725 5.22151 5.32046 5.42347 5.46820 5.58968 5.65707 5.85814 5.98088 6.02555 6.05202 6.18719 6.29764 6.44068 6.61663 6.78212 6.89974 7.03736 7.10746 7.21302 7.33979 7.51831 7.63785 7.76899 7.93633 8.08659 8.49040 9.11664 9.67839 11.18188 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035971 B = 0.004667 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.214866 B = 5998.381255 C = 6374.006827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.173 4.173 3 C 0.036 3.964 4 N -0.494 5.494 5 C 0.084 3.916 6 C 0.084 3.916 7 C -0.136 4.136 8 C -0.089 4.089 9 C -0.083 4.083 10 C -0.075 4.075 11 C 0.030 3.970 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.074 4.074 21 C -0.101 4.101 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.161 0.839 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 17.465 8.224 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.180 4.180 3 C -0.088 4.088 4 N -0.178 5.178 5 C -0.058 4.058 6 C -0.020 4.020 7 C -0.157 4.157 8 C -0.108 4.108 9 C -0.084 4.084 10 C -0.112 4.112 11 C -0.008 4.008 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.092 4.092 21 C -0.106 4.106 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.178 0.822 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.852 17.686 8.030 19.512 hybrid contribution 0.006 -0.865 -0.229 0.895 sum 1.858 16.821 7.801 18.635 Atomic orbital electron populations 1.20067 0.89788 1.01822 1.01566 1.20273 0.95064 0.91059 1.11631 1.21409 0.82012 0.98681 1.06743 1.43614 1.05566 1.04137 1.64520 1.21823 0.88129 0.93479 1.02395 1.18193 0.95667 0.82425 1.05702 1.19898 0.95913 0.92196 1.07684 1.20792 0.96926 0.93720 0.99354 1.19829 0.92363 0.97260 0.98993 1.20760 1.00682 0.88295 1.01470 1.19074 0.97406 0.95227 0.89046 1.21255 1.49015 0.93448 0.92248 0.92686 1.25021 0.95484 0.98214 0.95674 1.69970 1.50411 1.35825 0.97235 0.86675 0.78798 0.85739 0.76873 1.20248 1.21347 1.20271 1.20145 0.99052 0.90208 0.99837 1.19073 0.91702 0.93147 1.06633 0.92001 0.91781 0.92411 0.82198 0.91832 0.90425 0.90383 0.87025 0.85841 0.92462 0.92457 0.96468 0.96525 0.93012 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.41 36.00 0.37 -0.51 16 2 C -0.17 -2.54 6.32 -102.71 -0.65 -3.18 16 3 C 0.04 0.45 11.21 -16.73 -0.19 0.26 16 4 N -0.49 -6.57 3.18 -121.80 -0.39 -6.96 16 5 C 0.08 0.73 11.03 59.85 0.66 1.39 16 6 C 0.08 1.39 6.81 -83.98 -0.57 0.82 16 7 C -0.14 -2.19 9.97 -39.43 -0.39 -2.58 16 8 C -0.09 -1.58 9.66 -39.54 -0.38 -1.97 16 9 C -0.08 -1.64 5.10 -104.98 -0.54 -2.18 16 10 C -0.07 -1.62 5.26 -27.88 -0.15 -1.77 16 11 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 C -0.07 -1.40 9.67 -39.64 -0.38 -1.78 16 21 C -0.10 -1.79 6.35 -105.13 -0.67 -2.45 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 30 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -33.08 308.16 -8.91 -41.99 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.45 Total: -2.71 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -3.43 Total: -27.11 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.35 Total: -33.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.08 -8.91 -41.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.047 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds