Wall clock time and date at job start Mon Mar 30 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34244 * 126.50201 * 2 1 4 4 N 1.36833 * 109.93092 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.06296 * 180.02562 * 4 3 2 6 6 C 1.37692 * 109.87406 * 0.26052 * 4 3 2 7 7 C 1.39123 * 133.50455 * 180.51514 * 6 4 3 8 8 C 1.37747 * 119.78039 * 179.57602 * 7 6 4 9 9 C 1.38822 * 120.66463 * 359.67621 * 8 7 6 10 10 C 1.50706 * 119.73680 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46563 * 269.97709 * 10 9 8 12 12 C 1.50703 * 109.46671 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00027 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99857 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00083 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47054 * 60.00242 * 16 14 12 18 18 H 1.48499 * 109.47042 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47285 * 300.00083 * 16 14 12 20 20 C 1.36632 * 120.53342 * 0.02562 * 9 8 7 21 21 C 1.39629 * 119.76073 * 0.02562 * 20 9 8 22 22 H 1.08999 * 109.46665 * 90.02581 * 1 2 3 23 23 H 1.08996 * 109.47235 * 210.02475 * 1 2 3 24 24 H 1.08995 * 109.46907 * 330.02921 * 1 2 3 25 25 H 1.08003 * 125.03378 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.47391 * 90.01941 * 5 4 3 27 27 H 1.09001 * 109.46813 * 330.01997 * 5 4 3 28 28 H 1.09004 * 109.47041 * 210.02124 * 5 4 3 29 29 H 1.08006 * 120.10736 * 359.26735 * 7 6 4 30 30 H 1.08002 * 119.66380 * 179.69421 * 8 7 6 31 31 H 1.08990 * 109.46849 * 29.97197 * 10 9 8 32 32 H 1.08994 * 109.47425 * 149.97427 * 10 9 8 33 33 H 1.09001 * 109.47344 * 299.99662 * 11 10 9 34 34 H 1.08994 * 109.47480 * 59.99752 * 11 10 9 35 35 H 0.96996 * 120.00210 * 179.97438 * 15 14 12 36 36 H 1.07990 * 120.12010 * 180.02562 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6888 -0.0006 5 6 4.7657 1.5981 -0.0002 6 6 3.6964 -0.6858 -0.0069 7 6 4.7589 -1.5838 -0.0009 8 6 4.5097 -2.9386 -0.0015 9 6 3.2072 -3.4189 -0.0012 10 6 2.9586 -4.9053 -0.0013 11 6 2.8735 -5.4079 -1.4439 12 6 2.6255 -6.8944 -1.4440 13 1 2.5370 -7.4272 -0.5087 14 6 2.5106 -7.5741 -2.6381 15 7 2.6179 -6.9252 -3.7771 16 14 2.2025 -9.4165 -2.6383 17 1 0.9256 -9.7049 -1.9370 18 1 2.1201 -9.9045 -4.0384 19 1 3.3174 -10.1049 -1.9395 20 6 2.1488 -2.5548 -0.0009 21 6 2.3784 -1.1776 -0.0013 22 1 -0.3632 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 1.9635 2.1035 -0.0004 26 1 5.0510 1.8227 1.0275 27 1 4.4979 2.5219 -0.5130 28 1 5.6027 1.1263 -0.5149 29 1 5.7758 -1.2199 -0.0009 30 1 5.3360 -3.6340 -0.0019 31 1 3.7768 -5.4104 0.5118 32 1 2.0213 -5.1169 0.5131 33 1 2.0553 -4.9027 -1.9571 34 1 3.8108 -5.1963 -1.9583 35 1 2.5374 -7.4033 -4.6171 36 1 1.1383 -2.9358 -0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260163643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:38 Heat of formation + Delta-G solvation = 21.614341 kcal Electronic energy + Delta-G solvation = -16499.733491 eV Core-core repulsion = 13947.728280 eV Total energy + Delta-G solvation = -2552.005211 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.18905 -38.63407 -35.58087 -34.60195 -33.46332 -30.82058 -30.36434 -29.00548 -26.93549 -25.33378 -23.65779 -23.07150 -21.29428 -20.23104 -18.51490 -17.61529 -17.19620 -16.52180 -16.22484 -16.01529 -15.10644 -14.88486 -14.48812 -14.26577 -14.11469 -13.88737 -13.68201 -13.60213 -13.34759 -12.99028 -12.85025 -12.78124 -12.61545 -12.21669 -11.96993 -11.86947 -11.51363 -11.37894 -11.12382 -10.54364 -10.33670 -8.94310 -8.33994 -8.16885 -6.30555 0.25358 0.71940 1.40686 1.44734 1.52607 1.79861 2.00812 2.42479 2.98538 3.14386 3.78529 3.89072 4.00098 4.14037 4.23082 4.46260 4.50051 4.52842 4.60135 4.68428 4.74655 4.87009 4.90555 4.93740 4.95781 5.07174 5.19228 5.22197 5.35541 5.50348 5.57657 5.62455 5.83971 5.88774 5.92306 6.00316 6.24613 6.35851 6.53660 6.86280 7.38747 8.93779 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035971 B = 0.004667 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.214866 B = 5998.381255 C = 6374.006827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.207 4.207 3 C 0.058 3.942 4 N -0.491 5.491 5 C 0.074 3.926 6 C 0.069 3.931 7 C -0.125 4.125 8 C -0.110 4.110 9 C -0.108 4.108 10 C -0.059 4.059 11 C 0.039 3.961 12 C -0.545 4.545 13 H 0.063 0.937 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.265 1.265 20 C -0.092 4.092 21 C -0.128 4.128 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.208 0.792 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.064 0.936 32 H 0.057 0.943 33 H -0.016 1.016 34 H -0.011 1.011 35 H 0.263 0.737 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 19.244 9.044 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.214 4.214 3 C -0.067 4.067 4 N -0.174 5.174 5 C -0.066 4.066 6 C -0.037 4.037 7 C -0.146 4.146 8 C -0.129 4.129 9 C -0.110 4.110 10 C -0.097 4.097 11 C 0.002 3.998 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.111 4.111 21 C -0.132 4.132 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.106 0.894 25 H 0.224 0.776 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.002 0.998 34 H 0.007 0.993 35 H 0.072 0.928 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.344 19.490 8.870 21.542 hybrid contribution -0.125 -1.223 -0.490 1.323 sum 2.219 18.268 8.380 20.220 Atomic orbital electron populations 1.20080 0.88381 1.02691 1.01752 1.20655 0.96453 0.90590 1.13682 1.22131 0.81298 1.00108 1.03151 1.44006 1.07246 1.03331 1.62828 1.22201 0.86712 0.93602 1.04097 1.18401 0.95198 0.84371 1.05710 1.20161 0.97490 0.91334 1.05581 1.20897 0.96210 0.95076 1.00705 1.19695 0.93787 0.95879 1.01589 1.20483 1.00954 0.90281 0.97948 1.18898 0.94493 0.94665 0.91776 1.21702 1.49195 0.94540 0.92890 0.91861 1.26030 0.94841 1.03909 0.95070 1.70122 1.51232 1.38162 0.98022 0.85457 0.79282 0.78815 0.77221 1.19085 1.20801 1.18945 1.20170 0.98473 0.91478 1.00964 1.19470 0.93711 0.93272 1.06769 0.92130 0.93025 0.89439 0.77562 0.90088 0.87470 0.89982 0.83823 0.85194 0.91757 0.92437 0.99768 0.99276 0.92786 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 10.41 71.24 0.74 -0.89 16 2 C -0.21 -5.82 6.32 -18.63 -0.12 -5.93 16 3 C 0.06 1.26 11.21 83.00 0.93 2.19 16 4 N -0.49 -11.52 3.18 -539.25 -1.71 -13.23 16 5 C 0.07 0.97 11.03 127.77 1.41 2.38 16 6 C 0.07 2.20 6.81 39.03 0.27 2.47 16 7 C -0.13 -3.92 9.97 22.37 0.22 -3.70 16 8 C -0.11 -4.01 9.66 22.29 0.22 -3.80 16 9 C -0.11 -4.51 5.10 -20.10 -0.10 -4.61 16 10 C -0.06 -2.72 5.26 29.85 0.16 -2.56 16 11 C 0.04 2.21 4.96 29.85 0.15 2.35 16 12 C -0.55 -32.46 9.11 25.60 0.23 -32.23 16 13 H 0.06 3.57 7.74 -2.91 -0.02 3.54 16 14 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 15 N -0.94 -59.24 13.29 21.45 0.28 -58.96 16 16 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 20 C -0.09 -3.70 9.67 22.23 0.22 -3.48 16 21 C -0.13 -4.55 6.35 -20.20 -0.13 -4.67 16 22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 27 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.04 8.10 -2.38 -0.02 1.02 16 29 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.06 2.78 8.08 -2.39 -0.02 2.76 16 32 H 0.06 2.56 8.07 -2.39 -0.02 2.54 16 33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.11 4.37 8.06 -2.92 -0.02 4.35 16 Total: -1.00 -74.53 308.16 6.29 -68.24 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.04 Total: 8.55 kcal Atomic # 6 Polarization: -56.74 SS G_CDS: 4.65 Total: -52.09 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.43 Total: -72.19 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.53 6.29 -68.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.854 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds