Wall clock time and date at job start Mon Mar 30 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00179 * 2 1 4 4 H 1.48500 * 109.47204 * 269.99545 * 3 2 1 5 5 H 1.48502 * 109.47444 * 29.99957 * 3 2 1 6 6 H 1.48502 * 109.47030 * 149.99743 * 3 2 1 7 7 C 1.37881 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99520 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47361 * 179.97438 * 9 7 2 11 11 C 1.38126 * 120.03674 * 265.02751 * 10 9 7 12 12 C 1.38268 * 120.07464 * 179.97438 * 11 10 9 13 13 C 1.38311 * 120.14664 * 359.96976 * 12 11 10 14 14 C 1.38083 * 120.07752 * 359.75252 * 13 12 11 15 15 C 1.38887 * 120.03697 * 84.99776 * 10 9 7 16 16 N 1.39672 * 120.07428 * 0.02562 * 15 10 9 17 17 C 1.49819 * 111.02655 * 279.88305 * 16 15 10 18 18 C 1.56741 * 99.21708 * 242.11351 * 17 16 15 19 19 C 1.55143 * 101.83043 * 316.70626 * 18 17 16 20 20 C 1.50242 * 111.00190 * 168.43361 * 16 15 10 21 21 C 1.55696 * 108.30523 * 76.23035 * 20 16 15 22 22 H 0.97004 * 119.99577 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47267 * 59.99736 * 9 7 2 24 24 H 1.08996 * 109.47053 * 300.00379 * 9 7 2 25 25 H 1.07999 * 119.96255 * 359.96911 * 11 10 9 26 26 H 1.07994 * 119.92808 * 179.97438 * 12 11 10 27 27 H 1.07999 * 119.96072 * 179.97438 * 13 12 11 28 28 H 1.07993 * 120.04203 * 180.27263 * 14 13 12 29 29 H 1.09002 * 111.44446 * 124.61668 * 17 16 15 30 30 H 1.09007 * 111.46527 * 359.61977 * 17 16 15 31 31 H 1.08997 * 118.97684 * 180.86069 * 18 17 16 32 32 H 1.08998 * 114.43931 * 310.11671 * 19 18 17 33 33 H 1.09000 * 114.44114 * 176.74721 * 19 18 17 34 34 H 1.09005 * 118.00608 * 296.95321 * 20 16 15 35 35 H 1.09001 * 114.52451 * 173.11615 * 21 20 16 36 36 H 1.09001 * 114.52774 * 306.74601 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6007 -4.2375 -1.1907 12 6 3.4994 -5.2882 -1.1917 13 6 4.0310 -5.7488 -0.0007 14 6 3.6693 -5.1568 1.1932 15 6 2.7616 -4.1050 1.1983 16 7 2.3892 -3.5077 2.4047 17 6 3.1456 -2.2342 2.6300 18 6 3.9066 -2.6233 3.9439 19 6 2.7918 -3.3291 4.7600 20 6 2.8525 -4.3261 3.5764 21 6 4.3819 -4.0979 3.7581 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 2.1878 -3.8801 -2.1225 26 1 3.7871 -5.7503 -2.1244 27 1 4.7324 -6.5699 -0.0049 28 1 4.0880 -5.5140 2.1224 29 1 2.4711 -1.3938 2.7941 30 1 3.8384 -2.0319 1.8131 31 1 4.5646 -1.8899 4.4099 32 1 1.8599 -2.7680 4.8296 33 1 3.1227 -3.7405 5.7136 34 1 2.4477 -5.3318 3.6902 35 1 4.8039 -4.5528 4.6542 36 1 4.9754 -4.2734 2.8608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260173945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:04 Heat of formation + Delta-G solvation = 96.473132 kcal Electronic energy + Delta-G solvation = -17794.791941 eV Core-core repulsion = 15246.032851 eV Total energy + Delta-G solvation = -2548.759090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.33147 -38.12789 -33.57287 -32.69154 -31.10123 -28.85951 -27.39076 -26.32677 -25.00833 -23.09446 -22.32536 -20.35126 -19.59204 -19.14657 -16.65679 -16.24539 -15.32463 -15.19929 -14.72629 -14.41553 -13.66826 -13.60738 -12.84972 -12.63012 -12.26767 -12.09815 -11.63184 -11.56384 -11.33275 -11.14839 -11.00043 -10.75055 -10.72847 -10.45242 -10.40540 -10.16338 -9.79439 -9.53252 -9.40506 -8.68096 -8.34731 -7.94162 -7.28174 -5.97567 -3.99645 2.00574 2.16476 3.30872 3.38054 3.40214 4.21715 4.40765 4.54165 4.55504 4.69192 4.78796 5.19430 5.36923 5.46146 5.53835 5.59904 5.71267 5.80531 5.90696 5.97800 6.03856 6.08441 6.21517 6.27692 6.32602 6.43749 6.49211 6.66698 6.77411 6.92527 7.01567 7.21600 7.35091 7.49692 7.71509 7.93259 8.00585 8.10310 8.40443 9.03808 9.61444 11.12174 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.010155 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.417409 B = 2756.628013 C = 3728.162382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.052 0.948 9 C 0.053 3.947 10 C -0.034 4.034 11 C -0.116 4.116 12 C -0.139 4.139 13 C -0.137 4.137 14 C -0.169 4.169 15 C 0.081 3.919 16 N -0.430 5.430 17 C 0.069 3.931 18 C -0.151 4.151 19 C -0.139 4.139 20 C 0.029 3.971 21 C -0.177 4.177 22 H 0.260 0.740 23 H 0.022 0.978 24 H 0.043 0.957 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.707 -8.423 6.021 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.016 3.984 10 C -0.035 4.035 11 C -0.134 4.134 12 C -0.157 4.157 13 C -0.155 4.155 14 C -0.189 4.189 15 C -0.015 4.015 16 N -0.147 5.147 17 C -0.055 4.055 18 C -0.169 4.169 19 C -0.177 4.177 20 C -0.080 4.080 21 C -0.216 4.216 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.136 0.864 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.141 0.859 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.898 -8.185 6.015 12.278 hybrid contribution 1.333 0.759 -0.078 1.536 sum 8.232 -7.426 5.937 12.576 Atomic orbital electron populations 1.69962 1.05911 1.26483 1.50685 1.24942 0.94757 0.98800 0.95589 0.86686 0.79899 0.83870 0.78136 1.20776 1.21245 1.19855 1.20960 0.92529 0.89858 1.50463 0.92969 1.18263 0.92541 0.89030 0.98549 1.20476 0.96453 0.96299 0.90320 1.21019 0.98315 0.96122 0.97968 1.20988 0.99191 0.98260 0.97290 1.20742 1.01473 1.00615 0.92718 1.21642 0.98949 0.99937 0.98416 1.18958 0.95347 0.96102 0.91108 1.64039 1.48588 1.03298 0.98746 1.23809 0.95163 0.92426 0.94141 1.24833 0.98044 0.95595 0.98471 1.23787 0.99479 0.98294 0.96145 1.24685 0.93764 0.97313 0.92241 1.24713 0.97507 0.97301 1.02030 0.93014 0.96014 0.93902 0.86376 0.87301 0.87435 0.85869 0.88014 0.90871 0.87893 0.90596 0.89892 0.86928 0.89220 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.50 -13.55 7.29 -34.44 -0.25 -13.80 16 8 H 0.05 1.41 6.92 -52.49 -0.36 1.05 16 9 C 0.05 1.38 4.64 -29.04 -0.13 1.24 16 10 C -0.03 -0.76 5.06 -104.42 -0.53 -1.29 16 11 C -0.12 -2.32 9.67 -39.61 -0.38 -2.70 16 12 C -0.14 -2.38 10.04 -39.54 -0.40 -2.78 16 13 C -0.14 -2.24 10.04 -39.61 -0.40 -2.64 16 14 C -0.17 -2.95 7.94 -39.38 -0.31 -3.26 16 15 C 0.08 1.64 4.88 -83.79 -0.41 1.23 16 16 N -0.43 -8.38 4.79 -160.04 -0.77 -9.15 16 17 C 0.07 1.33 5.13 -0.17 0.00 1.33 16 18 C -0.15 -2.24 6.40 -91.66 -0.59 -2.82 16 19 C -0.14 -1.94 7.47 -31.34 -0.23 -2.17 16 20 C 0.03 0.44 4.63 -69.23 -0.32 0.12 16 21 C -0.18 -2.38 6.65 -30.40 -0.20 -2.58 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.02 0.60 8.05 -51.93 -0.42 0.18 16 24 H 0.04 1.20 7.63 -51.93 -0.40 0.81 16 25 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 26 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.12 1.87 4.74 -52.49 -0.25 1.62 16 29 H 0.10 2.16 8.07 -51.93 -0.42 1.74 16 30 H 0.07 1.53 6.69 -51.93 -0.35 1.18 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 34 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 36 H 0.07 1.07 5.91 -51.93 -0.31 0.77 16 LS Contribution 284.86 15.07 4.29 4.29 Total: -1.00 -29.13 284.86 -10.00 -39.13 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.99 Total: 3.47 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -4.26 Total: -28.54 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.03 Total: -34.56 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.13 -10.00 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.604 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds