Wall clock time and date at job start Mon Mar 30 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00179 * 2 1 4 4 H 1.48500 * 109.47204 * 269.99545 * 3 2 1 5 5 H 1.48502 * 109.47444 * 29.99957 * 3 2 1 6 6 H 1.48502 * 109.47030 * 149.99743 * 3 2 1 7 7 C 1.37881 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99520 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47361 * 179.97438 * 9 7 2 11 11 C 1.38126 * 120.03674 * 265.02751 * 10 9 7 12 12 C 1.38268 * 120.07464 * 179.97438 * 11 10 9 13 13 C 1.38311 * 120.14664 * 359.96976 * 12 11 10 14 14 C 1.38083 * 120.07752 * 359.75252 * 13 12 11 15 15 C 1.38887 * 120.03697 * 84.99776 * 10 9 7 16 16 N 1.39672 * 120.07428 * 0.02562 * 15 10 9 17 17 C 1.49819 * 111.02655 * 279.88305 * 16 15 10 18 18 C 1.56741 * 99.21708 * 242.11351 * 17 16 15 19 19 C 1.55143 * 101.83043 * 316.70626 * 18 17 16 20 20 C 1.50242 * 111.00190 * 168.43361 * 16 15 10 21 21 C 1.55696 * 108.30523 * 76.23035 * 20 16 15 22 22 H 0.97004 * 119.99577 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47267 * 59.99736 * 9 7 2 24 24 H 1.08996 * 109.47053 * 300.00379 * 9 7 2 25 25 H 1.07999 * 119.96255 * 359.96911 * 11 10 9 26 26 H 1.07994 * 119.92808 * 179.97438 * 12 11 10 27 27 H 1.07999 * 119.96072 * 179.97438 * 13 12 11 28 28 H 1.07993 * 120.04203 * 180.27263 * 14 13 12 29 29 H 1.09002 * 111.44446 * 124.61668 * 17 16 15 30 30 H 1.09007 * 111.46527 * 359.61977 * 17 16 15 31 31 H 1.08997 * 118.97684 * 180.86069 * 18 17 16 32 32 H 1.08998 * 114.43931 * 310.11671 * 19 18 17 33 33 H 1.09000 * 114.44114 * 176.74721 * 19 18 17 34 34 H 1.09005 * 118.00608 * 296.95321 * 20 16 15 35 35 H 1.09001 * 114.52451 * 173.11615 * 21 20 16 36 36 H 1.09001 * 114.52774 * 306.74601 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6007 -4.2375 -1.1907 12 6 3.4994 -5.2882 -1.1917 13 6 4.0310 -5.7488 -0.0007 14 6 3.6693 -5.1568 1.1932 15 6 2.7616 -4.1050 1.1983 16 7 2.3892 -3.5077 2.4047 17 6 3.1456 -2.2342 2.6300 18 6 3.9066 -2.6233 3.9439 19 6 2.7918 -3.3291 4.7600 20 6 2.8525 -4.3261 3.5764 21 6 4.3819 -4.0979 3.7581 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 2.1878 -3.8801 -2.1225 26 1 3.7871 -5.7503 -2.1244 27 1 4.7324 -6.5699 -0.0049 28 1 4.0880 -5.5140 2.1224 29 1 2.4711 -1.3938 2.7941 30 1 3.8384 -2.0319 1.8131 31 1 4.5646 -1.8899 4.4099 32 1 1.8599 -2.7680 4.8296 33 1 3.1227 -3.7405 5.7136 34 1 2.4477 -5.3318 3.6902 35 1 4.8039 -4.5528 4.6542 36 1 4.9754 -4.2734 2.8608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:04 Heat of formation + Delta-G solvation = 80.052967 kcal Electronic energy + Delta-G solvation = -17795.503972 eV Core-core repulsion = 15246.032851 eV Total energy + Delta-G solvation = -2549.471122 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.61525 -39.55748 -35.49091 -34.20271 -32.86991 -30.31004 -29.06582 -27.88248 -26.14115 -25.04315 -23.70913 -21.86752 -21.05518 -20.34985 -18.42858 -17.99408 -16.81164 -16.46809 -16.36759 -16.11581 -15.06584 -14.98854 -14.51297 -14.18869 -13.86918 -13.73171 -13.33268 -13.09583 -12.73748 -12.67947 -12.57802 -12.45568 -12.29862 -11.99825 -11.75318 -11.53910 -11.47577 -11.37500 -10.94122 -10.56014 -10.11380 -9.47585 -8.75889 -8.13661 -6.24543 0.56541 0.67979 1.36999 1.37345 1.48174 2.39939 2.87028 3.10643 3.16531 3.39565 3.52122 3.61914 3.93755 4.16253 4.22994 4.37307 4.39679 4.54492 4.65594 4.74266 4.83479 4.87353 4.93692 4.95789 4.97593 5.16528 5.19625 5.25905 5.27774 5.31762 5.41099 5.58096 5.71517 5.74423 5.92116 5.96388 6.20592 6.24834 6.64329 6.85401 7.40704 8.95273 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.010155 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.417409 B = 2756.628013 C = 3728.162382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.499 4.499 8 H 0.048 0.952 9 C 0.070 3.930 10 C -0.079 4.079 11 C -0.132 4.132 12 C -0.135 4.135 13 C -0.122 4.122 14 C -0.166 4.166 15 C 0.072 3.928 16 N -0.465 5.465 17 C 0.068 3.932 18 C -0.150 4.150 19 C -0.128 4.128 20 C 0.015 3.985 21 C -0.152 4.152 22 H 0.262 0.738 23 H -0.013 1.013 24 H 0.006 0.994 25 H 0.110 0.890 26 H 0.144 0.856 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.123 0.877 32 H 0.050 0.950 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.901 -10.344 7.475 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.033 3.967 10 C -0.080 4.080 11 C -0.150 4.150 12 C -0.153 4.153 13 C -0.141 4.141 14 C -0.186 4.186 15 C -0.024 4.024 16 N -0.182 5.182 17 C -0.057 4.057 18 C -0.168 4.168 19 C -0.165 4.165 20 C -0.093 4.093 21 C -0.190 4.190 22 H 0.070 0.930 23 H 0.006 0.994 24 H 0.024 0.976 25 H 0.128 0.872 26 H 0.162 0.838 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.141 0.859 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.103 -10.117 7.471 16.132 hybrid contribution 0.315 1.269 -0.535 1.413 sum 10.418 -8.847 6.936 15.327 Atomic orbital electron populations 1.70103 1.07625 1.27418 1.52037 1.25802 0.95563 1.02563 0.95203 0.85619 0.78880 0.79263 0.78401 1.20065 1.20748 1.18729 1.21127 0.92258 0.90758 1.49534 0.93387 1.17869 0.92706 0.91100 0.94980 1.20272 0.98063 0.96884 0.92819 1.21087 0.99609 0.97514 0.96824 1.21321 0.97670 0.96809 0.99478 1.21278 1.00637 1.00555 0.91610 1.21956 0.97672 0.98590 1.00343 1.19084 0.95876 0.96979 0.90462 1.63889 1.49898 1.04229 1.00161 1.23502 0.94406 0.91802 0.96022 1.24754 0.98715 0.97300 0.96080 1.23852 0.98083 0.97279 0.97323 1.24873 0.95811 0.97736 0.90882 1.24705 0.95556 0.95259 1.03478 0.92952 0.99421 0.97556 0.87193 0.83841 0.82992 0.82973 0.91957 0.93611 0.85884 0.93142 0.85722 0.85435 0.85045 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.50 -28.81 7.29 25.60 0.19 -28.62 16 8 H 0.05 2.75 6.92 -2.91 -0.02 2.73 16 9 C 0.07 3.98 4.64 29.10 0.13 4.12 16 10 C -0.08 -3.71 5.06 -19.74 -0.10 -3.81 16 11 C -0.13 -5.40 9.67 22.25 0.22 -5.18 16 12 C -0.13 -4.29 10.04 22.29 0.22 -4.06 16 13 C -0.12 -3.51 10.04 22.25 0.22 -3.29 16 14 C -0.17 -5.32 7.94 22.40 0.18 -5.14 16 15 C 0.07 2.96 4.88 38.21 0.19 3.14 16 16 N -0.46 -18.60 4.79 -660.24 -3.16 -21.76 16 17 C 0.07 2.72 5.13 87.04 0.45 3.16 16 18 C -0.15 -4.16 6.40 -11.47 -0.07 -4.24 16 19 C -0.13 -3.25 7.47 27.61 0.21 -3.05 16 20 C 0.01 0.42 4.63 42.06 0.19 0.61 16 21 C -0.15 -3.44 6.65 28.22 0.19 -3.25 16 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 23 H -0.01 -0.77 8.05 -2.38 -0.02 -0.79 16 24 H 0.01 0.38 7.63 -2.39 -0.02 0.37 16 25 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 26 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 27 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 28 H 0.15 3.94 4.74 -2.91 -0.01 3.92 16 29 H 0.06 2.88 8.07 -2.39 -0.02 2.87 16 30 H 0.05 2.02 6.69 -2.38 -0.02 2.00 16 31 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.12 2.19 7.86 -2.39 -0.02 2.17 16 34 H 0.13 3.22 8.14 -2.38 -0.02 3.20 16 35 H 0.13 1.99 7.87 -2.39 -0.02 1.97 16 36 H 0.07 1.65 5.91 -2.39 -0.01 1.63 16 Total: -1.00 -69.16 284.86 2.88 -66.28 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.06 Total: 14.58 kcal Atomic # 6 Polarization: -51.46 SS G_CDS: 2.67 Total: -48.78 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.88 Total: -79.25 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.16 2.88 -66.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.332 kcal (2) G-P(sol) polarization free energy of solvation -69.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds