Wall clock time and date at job start Mon Mar 30 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34916 * 126.10648 * 2 1 4 4 N 1.36547 * 109.51728 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.57139 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46926 * 60.02351 * 5 4 3 7 7 C 1.53000 * 109.47128 * 300.02804 * 5 4 3 8 8 C 1.37883 * 108.85537 * 0.26353 * 4 3 2 9 9 C 1.39020 * 133.42387 * 180.49168 * 8 4 3 10 10 C 1.38357 * 121.04638 * 179.59439 * 9 8 4 11 11 C 1.37675 * 121.57693 * 359.70781 * 10 9 8 12 12 C 1.40797 * 120.03884 * 359.97438 * 11 10 9 13 13 C 1.40608 * 120.71026 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99541 * 208.05039 * 13 12 11 15 15 C 1.40018 * 120.00343 * 28.05866 * 13 12 11 16 16 N 1.30827 * 119.99826 * 13.58276 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 193.58484 * 15 13 12 18 18 H 1.48502 * 109.47036 * 89.99739 * 17 15 13 19 19 H 1.48499 * 109.47399 * 209.99805 * 17 15 13 20 20 H 1.48500 * 109.46788 * 329.99992 * 17 15 13 21 21 C 1.40523 * 106.93387 * 359.58143 * 8 4 3 22 22 H 1.09004 * 109.46878 * 95.14859 * 1 2 3 23 23 H 1.08997 * 109.47579 * 215.14835 * 1 2 3 24 24 H 1.09006 * 109.47081 * 335.15050 * 1 2 3 25 25 H 1.07995 * 125.24025 * 359.94186 * 3 2 1 26 26 H 1.08996 * 109.47145 * 180.02562 * 5 4 3 27 27 H 1.08994 * 109.47338 * 300.00038 * 6 5 4 28 28 H 1.09009 * 109.46867 * 179.97438 * 6 5 4 29 29 H 1.08994 * 109.47097 * 60.00593 * 6 5 4 30 30 H 1.08996 * 109.47289 * 179.97438 * 7 5 4 31 31 H 1.09004 * 109.46899 * 300.00216 * 7 5 4 32 32 H 1.09004 * 109.47448 * 59.99793 * 7 5 4 33 33 H 1.07997 * 119.47289 * 359.32138 * 9 8 4 34 34 H 1.08000 * 119.21058 * 179.69038 * 10 9 8 35 35 H 1.07994 * 119.97957 * 180.02562 * 11 10 9 36 36 H 0.96998 * 119.99455 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3020 1.0900 0.0000 4 7 3.6106 0.7002 0.0006 5 6 4.7676 1.5989 0.0013 6 6 4.7275 2.4807 1.2510 7 6 4.7281 2.4820 -1.2475 8 6 3.6652 -0.6776 -0.0050 9 6 4.7118 -1.5925 0.0016 10 6 4.4689 -2.9546 0.0014 11 6 3.1876 -3.4584 0.0006 12 6 2.0857 -2.5820 0.0006 13 6 0.7712 -3.0811 0.0004 14 1 -0.0266 -2.5010 -0.4395 15 6 0.4964 -4.3300 0.5705 16 7 1.3876 -4.9123 1.3309 17 14 -1.1428 -5.1649 0.2455 18 1 -1.0320 -6.0190 -0.9642 19 1 -1.5102 -6.0058 1.4131 20 1 -2.1892 -4.1337 0.0293 21 6 2.3381 -1.1397 0.0006 22 1 -0.3633 -0.0922 -1.0236 23 1 -0.3634 -0.8402 0.5916 24 1 -0.3633 0.9326 0.4319 25 1 1.9566 2.1132 -0.0009 26 1 5.6849 1.0102 0.0012 27 1 3.8102 3.0693 1.2511 28 1 5.5887 3.1491 1.2517 29 1 4.7557 1.8516 2.1406 30 1 5.5887 3.1510 -1.2467 31 1 4.7565 1.8538 -2.1378 32 1 3.8107 3.0707 -1.2474 33 1 5.7307 -1.2344 0.0025 34 1 5.3043 -3.6390 0.0015 35 1 3.0277 -4.5264 0.0009 36 1 1.1974 -5.7777 1.7255 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260180425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:06 Heat of formation + Delta-G solvation = 39.689768 kcal Electronic energy + Delta-G solvation = -17339.792765 eV Core-core repulsion = 14788.571363 eV Total energy + Delta-G solvation = -2551.221402 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19192 -36.13684 -34.40880 -33.40659 -31.06607 -28.84187 -27.49342 -27.12572 -26.23248 -24.45938 -21.33225 -20.95645 -19.82203 -18.30328 -16.67079 -15.77147 -15.16468 -14.94586 -14.16144 -13.97825 -13.79993 -13.24822 -12.76941 -12.70532 -12.20304 -12.10994 -11.98820 -11.72343 -11.61562 -11.41318 -11.14241 -11.06441 -10.87328 -10.73881 -10.60651 -10.38396 -9.83535 -9.61573 -9.19582 -9.14916 -7.92327 -6.84778 -6.67448 -6.38537 -4.19423 2.55144 3.04249 3.08610 3.11440 3.42284 3.75240 3.93231 3.94548 4.69919 4.91862 5.22506 5.31622 5.60773 5.61495 5.79232 5.83217 5.87064 5.98258 6.13621 6.22440 6.24906 6.31865 6.40710 6.59963 6.72355 6.73116 6.93493 7.07380 7.21696 7.31133 7.44236 7.57733 7.91095 8.15986 8.24751 8.30666 8.36303 8.63212 8.79002 8.92769 9.09655 10.18249 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032542 B = 0.007185 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.214201 B = 3895.935276 C = 4498.351904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.130 4.130 3 C -0.037 4.037 4 N -0.480 5.480 5 C 0.139 3.861 6 C -0.159 4.159 7 C -0.159 4.159 8 C 0.129 3.871 9 C -0.281 4.281 10 C -0.054 4.054 11 C -0.227 4.227 12 C 0.160 3.840 13 C -0.439 4.439 14 H 0.085 0.915 15 C 0.072 3.928 16 N -0.782 5.782 17 Si 0.909 3.091 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.260 1.260 21 C -0.181 4.181 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.140 0.860 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.979 8.502 -1.542 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.138 4.138 3 C -0.159 4.159 4 N -0.165 5.165 5 C 0.036 3.964 6 C -0.217 4.217 7 C -0.217 4.217 8 C 0.024 3.976 9 C -0.304 4.304 10 C -0.074 4.074 11 C -0.248 4.248 12 C 0.156 3.844 13 C -0.467 4.467 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.406 5.406 17 Si 0.733 3.267 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.184 1.184 21 C -0.185 4.185 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.157 0.843 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.248 8.540 -1.376 8.938 hybrid contribution -0.497 -0.345 0.011 0.605 sum 1.751 8.195 -1.366 8.491 Atomic orbital electron populations 1.20161 0.91470 1.00880 1.00737 1.19007 0.94409 0.91858 1.08519 1.20912 0.82480 0.97460 1.15089 1.43681 1.04399 1.03998 1.64404 1.21009 0.89088 0.91116 0.95184 1.22149 1.02003 0.99652 0.97881 1.22155 1.02026 0.99642 0.97865 1.18086 0.95814 0.81178 1.02520 1.18965 0.93961 0.92020 1.25456 1.20242 0.96283 0.93023 0.97854 1.20875 0.90765 0.99178 1.13957 1.18083 0.93238 0.87527 0.85520 1.19598 0.94856 1.00789 1.31466 0.89704 1.26006 0.98834 0.96841 0.93004 1.69861 1.34881 1.14714 1.21119 0.86289 0.81842 0.79685 0.78837 1.19221 1.20272 1.18421 1.19162 0.90904 0.93109 1.15295 0.93157 0.90936 0.94057 0.84294 0.89392 0.92205 0.91788 0.92021 0.91787 0.92064 0.92215 0.90445 0.89611 0.86715 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.28 36.00 0.33 -1.14 16 2 C -0.13 -2.96 6.13 -104.73 -0.64 -3.60 16 3 C -0.04 -0.73 10.18 -16.63 -0.17 -0.90 16 4 N -0.48 -9.73 2.66 -107.27 -0.29 -10.02 16 5 C 0.14 2.17 3.56 -67.93 -0.24 1.93 16 6 C -0.16 -2.10 9.24 37.16 0.34 -1.75 16 7 C -0.16 -2.06 9.24 37.16 0.34 -1.72 16 8 C 0.13 3.15 6.82 -83.99 -0.57 2.58 16 9 C -0.28 -6.76 9.79 -39.25 -0.38 -7.14 16 10 C -0.05 -1.35 9.94 -39.74 -0.39 -1.74 16 11 C -0.23 -6.12 8.67 -38.82 -0.34 -6.46 16 12 C 0.16 4.39 5.70 -104.75 -0.60 3.79 16 13 C -0.44 -11.59 8.16 -38.02 -0.31 -11.90 16 14 H 0.08 2.14 6.11 -52.48 -0.32 1.82 16 15 C 0.07 1.80 5.21 -17.31 -0.09 1.71 16 16 N -0.78 -20.26 10.97 55.55 0.61 -19.65 16 17 Si 0.91 18.52 29.58 -169.99 -5.03 13.50 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 C -0.18 -4.69 6.21 -104.68 -0.65 -5.34 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.07 1.53 6.57 -51.93 -0.34 1.19 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.14 2.32 8.06 -52.49 -0.42 1.89 16 26 H 0.09 1.39 7.38 -51.93 -0.38 1.00 16 27 H 0.06 0.77 7.92 -51.93 -0.41 0.35 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.75 7.92 -51.93 -0.41 0.34 16 33 H 0.08 1.67 7.57 -52.49 -0.40 1.28 16 34 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.12 3.16 6.30 -52.49 -0.33 2.83 16 36 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -29.01 295.68 -8.73 -37.74 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.11 Total: 5.66 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: -3.37 Total: -31.68 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.32 Total: -29.67 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.01 -8.73 -37.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.432 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds