Wall clock time and date at job start Mon Mar 30 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34916 * 126.10648 * 2 1 4 4 N 1.36547 * 109.51728 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.57139 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46926 * 60.02351 * 5 4 3 7 7 C 1.53000 * 109.47128 * 300.02804 * 5 4 3 8 8 C 1.37883 * 108.85537 * 0.26353 * 4 3 2 9 9 C 1.39020 * 133.42387 * 180.49168 * 8 4 3 10 10 C 1.38357 * 121.04638 * 179.59439 * 9 8 4 11 11 C 1.37675 * 121.57693 * 359.70781 * 10 9 8 12 12 C 1.40797 * 120.03884 * 359.97438 * 11 10 9 13 13 C 1.40608 * 120.71026 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99541 * 208.05039 * 13 12 11 15 15 C 1.40018 * 120.00343 * 28.05866 * 13 12 11 16 16 N 1.30827 * 119.99826 * 13.58276 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 193.58484 * 15 13 12 18 18 H 1.48502 * 109.47036 * 89.99739 * 17 15 13 19 19 H 1.48499 * 109.47399 * 209.99805 * 17 15 13 20 20 H 1.48500 * 109.46788 * 329.99992 * 17 15 13 21 21 C 1.40523 * 106.93387 * 359.58143 * 8 4 3 22 22 H 1.09004 * 109.46878 * 95.14859 * 1 2 3 23 23 H 1.08997 * 109.47579 * 215.14835 * 1 2 3 24 24 H 1.09006 * 109.47081 * 335.15050 * 1 2 3 25 25 H 1.07995 * 125.24025 * 359.94186 * 3 2 1 26 26 H 1.08996 * 109.47145 * 180.02562 * 5 4 3 27 27 H 1.08994 * 109.47338 * 300.00038 * 6 5 4 28 28 H 1.09009 * 109.46867 * 179.97438 * 6 5 4 29 29 H 1.08994 * 109.47097 * 60.00593 * 6 5 4 30 30 H 1.08996 * 109.47289 * 179.97438 * 7 5 4 31 31 H 1.09004 * 109.46899 * 300.00216 * 7 5 4 32 32 H 1.09004 * 109.47448 * 59.99793 * 7 5 4 33 33 H 1.07997 * 119.47289 * 359.32138 * 9 8 4 34 34 H 1.08000 * 119.21058 * 179.69038 * 10 9 8 35 35 H 1.07994 * 119.97957 * 180.02562 * 11 10 9 36 36 H 0.96998 * 119.99455 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3020 1.0900 0.0000 4 7 3.6106 0.7002 0.0006 5 6 4.7676 1.5989 0.0013 6 6 4.7275 2.4807 1.2510 7 6 4.7281 2.4820 -1.2475 8 6 3.6652 -0.6776 -0.0050 9 6 4.7118 -1.5925 0.0016 10 6 4.4689 -2.9546 0.0014 11 6 3.1876 -3.4584 0.0006 12 6 2.0857 -2.5820 0.0006 13 6 0.7712 -3.0811 0.0004 14 1 -0.0266 -2.5010 -0.4395 15 6 0.4964 -4.3300 0.5705 16 7 1.3876 -4.9123 1.3309 17 14 -1.1428 -5.1649 0.2455 18 1 -1.0320 -6.0190 -0.9642 19 1 -1.5102 -6.0058 1.4131 20 1 -2.1892 -4.1337 0.0293 21 6 2.3381 -1.1397 0.0006 22 1 -0.3633 -0.0922 -1.0236 23 1 -0.3634 -0.8402 0.5916 24 1 -0.3633 0.9326 0.4319 25 1 1.9566 2.1132 -0.0009 26 1 5.6849 1.0102 0.0012 27 1 3.8102 3.0693 1.2511 28 1 5.5887 3.1491 1.2517 29 1 4.7557 1.8516 2.1406 30 1 5.5887 3.1510 -1.2467 31 1 4.7565 1.8538 -2.1378 32 1 3.8107 3.0707 -1.2474 33 1 5.7307 -1.2344 0.0025 34 1 5.3043 -3.6390 0.0015 35 1 3.0277 -4.5264 0.0009 36 1 1.1974 -5.7777 1.7255 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260180425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:06 Heat of formation + Delta-G solvation = 25.683800 kcal Electronic energy + Delta-G solvation = -17340.400109 eV Core-core repulsion = 14788.571363 eV Total energy + Delta-G solvation = -2551.828746 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.87868 -37.84796 -35.90159 -35.27567 -32.67930 -30.67401 -29.29933 -28.14136 -27.91479 -26.23620 -23.03002 -22.61485 -21.49364 -20.07844 -18.39341 -17.41304 -16.87577 -16.65959 -15.65703 -15.63513 -15.25094 -14.84132 -14.49606 -14.06940 -13.65324 -13.54859 -13.35665 -13.27908 -13.07189 -12.93774 -12.73846 -12.61349 -12.46579 -12.29352 -12.03390 -11.87898 -11.66199 -11.42891 -11.04085 -11.01221 -9.75296 -8.71063 -8.53828 -8.17877 -6.15429 0.73134 1.33507 1.39745 1.53221 1.59095 2.18897 2.20662 2.26028 2.80690 3.76306 3.81812 4.11039 4.13957 4.24454 4.44855 4.60414 4.62496 4.69357 4.75203 4.84335 4.86757 4.92546 5.00533 5.07201 5.16371 5.19360 5.28024 5.31779 5.36095 5.49070 5.61582 5.79454 6.01614 6.23687 6.36373 6.41994 6.52121 6.84356 6.98132 7.01656 7.16624 8.34886 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032542 B = 0.007185 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.214201 B = 3895.935276 C = 4498.351904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.174 4.174 3 C -0.004 4.004 4 N -0.473 5.473 5 C 0.126 3.874 6 C -0.152 4.152 7 C -0.151 4.151 8 C 0.102 3.898 9 C -0.278 4.278 10 C -0.069 4.069 11 C -0.257 4.257 12 C 0.125 3.875 13 C -0.467 4.467 14 H 0.086 0.914 15 C 0.030 3.970 16 N -0.818 5.818 17 Si 0.984 3.016 18 H -0.262 1.262 19 H -0.268 1.268 20 H -0.253 1.253 21 C -0.210 4.210 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.185 0.815 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 11.264 -1.755 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.181 4.181 3 C -0.129 4.129 4 N -0.156 5.156 5 C 0.025 3.975 6 C -0.209 4.209 7 C -0.209 4.209 8 C -0.005 4.005 9 C -0.300 4.300 10 C -0.088 4.088 11 C -0.278 4.278 12 C 0.122 3.878 13 C -0.496 4.496 14 H 0.104 0.896 15 C -0.186 4.186 16 N -0.443 5.443 17 Si 0.804 3.196 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.177 1.177 21 C -0.215 4.215 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.202 0.798 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.165 11.333 -1.590 11.647 hybrid contribution -0.308 -1.007 0.084 1.056 sum 1.858 10.326 -1.506 10.600 Atomic orbital electron populations 1.20087 0.89856 1.01576 1.00875 1.19423 0.96053 0.91611 1.11017 1.21543 0.81932 0.98690 1.10735 1.44076 1.06054 1.03078 1.62401 1.21474 0.87041 0.91065 0.97958 1.22112 1.04146 0.99306 0.95365 1.22110 1.04138 0.99282 0.95331 1.18293 0.95376 0.83392 1.03483 1.19248 0.95182 0.91764 1.23842 1.20484 0.96171 0.94119 0.98025 1.20838 0.92016 0.98419 1.16564 1.18497 0.93934 0.88897 0.86500 1.19810 0.94761 1.02190 1.32804 0.89613 1.26906 1.02703 0.96872 0.92083 1.69933 1.37076 1.15334 1.21986 0.85177 0.76979 0.78541 0.78910 1.18692 1.19234 1.17651 1.19648 0.92902 0.93458 1.15451 0.92710 0.93361 0.90697 0.79836 0.89882 0.91303 0.88271 0.94032 0.88320 0.93789 0.91315 0.88114 0.87557 0.88549 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.57 9.28 71.23 0.66 -1.91 16 2 C -0.17 -7.80 6.13 -19.94 -0.12 -7.92 16 3 C 0.00 -0.17 10.18 83.20 0.85 0.68 16 4 N -0.47 -18.26 2.66 -493.29 -1.31 -19.57 16 5 C 0.13 3.52 3.56 44.99 0.16 3.68 16 6 C -0.15 -3.39 9.24 71.98 0.66 -2.72 16 7 C -0.15 -3.29 9.24 71.98 0.66 -2.62 16 8 C 0.10 4.97 6.82 38.94 0.27 5.23 16 9 C -0.28 -13.48 9.79 22.49 0.22 -13.26 16 10 C -0.07 -3.51 9.94 22.16 0.22 -3.29 16 11 C -0.26 -14.71 8.67 22.76 0.20 -14.51 16 12 C 0.12 7.23 5.70 -19.94 -0.11 7.11 16 13 C -0.47 -25.90 8.16 23.28 0.19 -25.71 16 14 H 0.09 4.54 6.11 -2.91 -0.02 4.52 16 15 C 0.03 1.55 5.21 85.27 0.44 1.99 16 16 N -0.82 -44.43 10.97 21.84 0.24 -44.19 16 17 Si 0.98 38.87 29.58 68.60 2.03 40.90 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 19 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 21 C -0.21 -11.19 6.21 -19.90 -0.12 -11.32 16 22 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.05 2.07 6.57 -2.39 -0.02 2.05 16 24 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 25 H 0.18 5.16 8.06 -2.91 -0.02 5.13 16 26 H 0.08 2.40 7.38 -2.39 -0.02 2.39 16 27 H 0.07 1.43 7.92 -2.39 -0.02 1.41 16 28 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.39 7.92 -2.39 -0.02 1.37 16 33 H 0.10 4.27 7.57 -2.91 -0.02 4.25 16 34 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 35 H 0.10 5.70 6.30 -2.91 -0.02 5.68 16 36 H 0.29 14.06 8.30 -92.71 -0.77 13.30 16 Total: -1.00 -66.87 295.68 6.19 -60.67 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 1.06 Total: 26.76 kcal Atomic # 6 Polarization: -68.74 SS G_CDS: 4.18 Total: -64.57 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -1.07 Total: -63.76 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -66.87 6.19 -60.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.358 kcal (2) G-P(sol) polarization free energy of solvation -66.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds