Wall clock time and date at job start Mon Mar 30 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00082 * 2 1 4 4 H 1.48500 * 109.46773 * 89.99987 * 3 2 1 5 5 H 1.48501 * 109.47076 * 209.99549 * 3 2 1 6 6 H 1.48494 * 109.46945 * 330.00156 * 3 2 1 7 7 C 1.37876 * 120.00182 * 180.27204 * 2 1 3 8 8 H 1.08004 * 119.99878 * 359.73236 * 7 2 1 9 9 C 1.50700 * 120.00226 * 179.72730 * 7 2 1 10 10 C 1.50707 * 109.47256 * 180.02562 * 9 7 2 11 11 C 1.38305 * 119.95903 * 269.72789 * 10 9 7 12 12 C 1.38270 * 120.14732 * 179.72570 * 11 10 9 13 13 C 1.38129 * 120.07486 * 0.54251 * 12 11 10 14 14 C 1.38896 * 119.92185 * 359.73220 * 13 12 11 15 15 N 1.39674 * 120.07193 * 180.02562 * 14 13 12 16 16 C 1.49604 * 111.00020 * 33.26434 * 15 14 13 17 17 C 1.56740 * 99.23138 * 242.10841 * 16 15 14 18 18 C 1.55978 * 106.43749 * 41.18952 * 17 16 15 19 19 C 1.50239 * 111.00088 * 281.79244 * 15 14 13 20 20 C 1.54879 * 103.48405 * 161.77127 * 19 15 14 21 21 C 1.38087 * 119.96289 * 89.99624 * 10 9 7 22 22 H 0.97001 * 119.99985 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47089 * 299.99868 * 9 7 2 24 24 H 1.08992 * 109.47633 * 60.00344 * 9 7 2 25 25 H 1.07997 * 119.92741 * 359.97438 * 11 10 9 26 26 H 1.07999 * 119.96092 * 180.27581 * 12 11 10 27 27 H 1.07997 * 120.03795 * 179.74960 * 13 12 11 28 28 H 1.09002 * 111.44601 * 359.61247 * 16 15 14 29 29 H 1.08998 * 111.44467 * 124.54972 * 16 15 14 30 30 H 1.09004 * 118.44175 * 181.31061 * 17 16 15 31 31 H 1.09003 * 114.52627 * 54.76839 * 18 17 16 32 32 H 1.09004 * 114.52859 * 188.44304 * 18 17 16 33 33 H 1.08993 * 117.57610 * 296.57631 * 19 15 14 34 34 H 1.08999 * 114.44351 * 181.54673 * 20 19 15 35 35 H 1.09002 * 114.47957 * 48.14637 * 20 19 15 36 36 H 1.07996 * 120.03565 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5468 1.4401 -0.6999 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0057 9 6 3.5115 -1.1940 -0.0119 10 6 4.0139 -2.6149 -0.0180 11 6 4.2544 -3.2675 1.1775 12 6 4.7100 -4.5730 1.1765 13 6 4.9370 -5.2260 -0.0193 14 6 4.7019 -4.5715 -1.2217 15 7 4.9299 -5.2290 -2.4327 16 6 4.6339 -6.6906 -2.3132 17 6 6.0614 -7.2620 -2.6174 18 6 7.0741 -6.3410 -1.8696 19 6 6.3957 -5.2596 -2.7611 20 6 6.5054 -6.3860 -3.8184 21 6 4.2388 -3.2617 -1.2170 22 1 -0.4850 0.8401 -0.0004 23 1 3.8712 -0.6781 -0.9022 24 1 3.8786 -0.6824 0.8777 25 1 4.0822 -2.7577 2.1138 26 1 4.8926 -5.0812 2.1118 27 1 5.2967 -6.2443 -0.0194 28 1 4.3071 -6.9501 -1.3062 29 1 3.9076 -7.0124 -3.0595 30 1 6.1955 -8.3436 -2.6318 31 1 6.8833 -6.2319 -0.8019 32 1 8.1205 -6.5320 -2.1074 33 1 6.8953 -4.3055 -2.9282 34 1 7.5197 -6.5797 -4.1674 35 1 5.7744 -6.3217 -4.6244 36 1 4.0545 -2.7501 -2.1501 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260184689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:31 Heat of formation + Delta-G solvation = 95.861470 kcal Electronic energy + Delta-G solvation = -17010.772836 eV Core-core repulsion = 14461.987222 eV Total energy + Delta-G solvation = -2548.785614 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64647 -38.35852 -33.93062 -32.72815 -31.28988 -29.05572 -27.47553 -27.42739 -25.23683 -23.06517 -22.07940 -21.10674 -19.72804 -19.19025 -16.81453 -16.75803 -15.92367 -15.51353 -14.83920 -14.37223 -14.14152 -13.57299 -12.97790 -12.81524 -12.69131 -12.32167 -12.18415 -11.91059 -11.65514 -11.54177 -11.20818 -11.00503 -10.86773 -10.72022 -10.42320 -10.18457 -10.03020 -9.88762 -9.36442 -8.79284 -8.57065 -8.05681 -7.76897 -6.05956 -4.05058 1.84841 2.02043 3.29468 3.37359 3.40351 3.83821 4.21762 4.24612 4.39571 4.42654 4.49553 4.73119 5.18821 5.25931 5.30816 5.37221 5.48520 5.56610 5.64942 5.72962 5.74781 5.83330 5.84551 5.96730 6.02383 6.04109 6.15704 6.32203 6.46877 6.61800 6.91708 6.95060 6.99650 7.03224 7.33743 7.59365 7.68778 7.80665 8.50952 8.99607 9.54119 11.07088 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038172 B = 0.005354 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.348483 B = 5228.274708 C = 5401.781344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.286 1.286 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.021 4.021 11 C -0.126 4.126 12 C -0.113 4.113 13 C -0.180 4.180 14 C 0.071 3.929 15 N -0.448 5.448 16 C 0.033 3.967 17 C -0.147 4.147 18 C -0.171 4.171 19 C 0.037 3.963 20 C -0.138 4.138 21 C -0.098 4.098 22 H 0.264 0.736 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.119 0.881 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.417 -12.718 -3.522 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.212 1.212 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.022 4.022 11 C -0.144 4.144 12 C -0.132 4.132 13 C -0.200 4.200 14 C -0.024 4.024 15 N -0.167 5.167 16 C -0.094 4.094 17 C -0.166 4.166 18 C -0.210 4.210 19 C -0.070 4.070 20 C -0.176 4.176 21 C -0.117 4.117 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.137 0.863 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.888 -12.285 -3.977 18.963 hybrid contribution 0.666 0.422 0.694 1.050 sum 14.554 -11.863 -3.283 19.061 Atomic orbital electron populations 1.69900 1.06264 1.26953 1.50722 1.24992 0.94730 0.98990 0.94493 0.86808 0.80438 0.83692 0.78600 1.20184 1.18909 1.21225 1.20923 0.88201 0.94697 1.51201 0.90816 1.18819 0.97527 0.88523 0.97386 1.20230 0.92196 0.97901 0.91855 1.21094 1.00461 0.94579 0.98289 1.20899 1.00212 0.95058 0.97029 1.21431 1.05268 1.00226 0.93070 1.18960 1.00701 0.94548 0.88165 1.64341 1.13842 1.10571 1.27972 1.23979 0.95742 0.87362 1.02338 1.24672 0.94771 0.98557 0.98583 1.24581 0.98674 0.97537 1.00195 1.24713 0.88072 0.97186 0.97043 1.23839 1.01427 0.96116 0.96224 1.20808 0.99350 0.93105 0.98453 0.92607 0.95336 0.95780 0.86326 0.86983 0.86632 0.90547 0.89041 0.87640 0.90663 0.88763 0.86445 0.89450 0.90761 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.51 -14.72 9.65 -34.44 -0.33 -15.06 16 8 H 0.07 2.33 7.98 -52.48 -0.42 1.91 16 9 C 0.01 0.35 4.17 -29.03 -0.12 0.23 16 10 C -0.02 -0.45 5.07 -104.65 -0.53 -0.98 16 11 C -0.13 -2.42 9.70 -39.55 -0.38 -2.80 16 12 C -0.11 -1.87 10.04 -39.61 -0.40 -2.26 16 13 C -0.18 -2.87 7.24 -39.38 -0.29 -3.15 16 14 C 0.07 1.23 4.99 -83.79 -0.42 0.81 16 15 N -0.45 -6.81 5.66 -160.40 -0.91 -7.72 16 16 C 0.03 0.41 6.52 -0.29 0.00 0.41 16 17 C -0.15 -1.49 6.39 -91.85 -0.59 -2.07 16 18 C -0.17 -1.81 7.41 -30.43 -0.23 -2.03 16 19 C 0.04 0.46 5.79 -69.39 -0.40 0.05 16 20 C -0.14 -1.40 7.48 -31.33 -0.23 -1.64 16 21 C -0.10 -1.97 9.62 -39.38 -0.38 -2.35 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.03 0.69 7.14 -51.93 -0.37 0.31 16 24 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 25 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 26 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 27 H 0.12 1.58 4.94 -52.49 -0.26 1.32 16 28 H 0.08 0.98 5.74 -51.93 -0.30 0.69 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.88 5.30 -51.93 -0.28 0.61 16 32 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.09 0.72 7.86 -51.93 -0.41 0.31 16 35 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 36 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 286.74 15.07 4.32 4.32 Total: -1.00 -30.80 286.74 -9.83 -40.63 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.95 Total: 1.90 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -4.40 Total: -28.92 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.13 Total: -34.76 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.80 -9.83 -40.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.494 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds