Wall clock time and date at job start Mon Mar 30 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00082 * 2 1 4 4 H 1.48500 * 109.46773 * 89.99987 * 3 2 1 5 5 H 1.48501 * 109.47076 * 209.99549 * 3 2 1 6 6 H 1.48494 * 109.46945 * 330.00156 * 3 2 1 7 7 C 1.37876 * 120.00182 * 180.27204 * 2 1 3 8 8 H 1.08004 * 119.99878 * 359.73236 * 7 2 1 9 9 C 1.50700 * 120.00226 * 179.72730 * 7 2 1 10 10 C 1.50707 * 109.47256 * 180.02562 * 9 7 2 11 11 C 1.38305 * 119.95903 * 269.72789 * 10 9 7 12 12 C 1.38270 * 120.14732 * 179.72570 * 11 10 9 13 13 C 1.38129 * 120.07486 * 0.54251 * 12 11 10 14 14 C 1.38896 * 119.92185 * 359.73220 * 13 12 11 15 15 N 1.39674 * 120.07193 * 180.02562 * 14 13 12 16 16 C 1.49604 * 111.00020 * 33.26434 * 15 14 13 17 17 C 1.56740 * 99.23138 * 242.10841 * 16 15 14 18 18 C 1.55978 * 106.43749 * 41.18952 * 17 16 15 19 19 C 1.50239 * 111.00088 * 281.79244 * 15 14 13 20 20 C 1.54879 * 103.48405 * 161.77127 * 19 15 14 21 21 C 1.38087 * 119.96289 * 89.99624 * 10 9 7 22 22 H 0.97001 * 119.99985 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47089 * 299.99868 * 9 7 2 24 24 H 1.08992 * 109.47633 * 60.00344 * 9 7 2 25 25 H 1.07997 * 119.92741 * 359.97438 * 11 10 9 26 26 H 1.07999 * 119.96092 * 180.27581 * 12 11 10 27 27 H 1.07997 * 120.03795 * 179.74960 * 13 12 11 28 28 H 1.09002 * 111.44601 * 359.61247 * 16 15 14 29 29 H 1.08998 * 111.44467 * 124.54972 * 16 15 14 30 30 H 1.09004 * 118.44175 * 181.31061 * 17 16 15 31 31 H 1.09003 * 114.52627 * 54.76839 * 18 17 16 32 32 H 1.09004 * 114.52859 * 188.44304 * 18 17 16 33 33 H 1.08993 * 117.57610 * 296.57631 * 19 15 14 34 34 H 1.08999 * 114.44351 * 181.54673 * 20 19 15 35 35 H 1.09002 * 114.47957 * 48.14637 * 20 19 15 36 36 H 1.07996 * 120.03565 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5468 1.4401 -0.6999 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0057 9 6 3.5115 -1.1940 -0.0119 10 6 4.0139 -2.6149 -0.0180 11 6 4.2544 -3.2675 1.1775 12 6 4.7100 -4.5730 1.1765 13 6 4.9370 -5.2260 -0.0193 14 6 4.7019 -4.5715 -1.2217 15 7 4.9299 -5.2290 -2.4327 16 6 4.6339 -6.6906 -2.3132 17 6 6.0614 -7.2620 -2.6174 18 6 7.0741 -6.3410 -1.8696 19 6 6.3957 -5.2596 -2.7611 20 6 6.5054 -6.3860 -3.8184 21 6 4.2388 -3.2617 -1.2170 22 1 -0.4850 0.8401 -0.0004 23 1 3.8712 -0.6781 -0.9022 24 1 3.8786 -0.6824 0.8777 25 1 4.0822 -2.7577 2.1138 26 1 4.8926 -5.0812 2.1118 27 1 5.2967 -6.2443 -0.0194 28 1 4.3071 -6.9501 -1.3062 29 1 3.9076 -7.0124 -3.0595 30 1 6.1955 -8.3436 -2.6318 31 1 6.8833 -6.2319 -0.8019 32 1 8.1205 -6.5320 -2.1074 33 1 6.8953 -4.3055 -2.9282 34 1 7.5197 -6.5797 -4.1674 35 1 5.7744 -6.3217 -4.6244 36 1 4.0545 -2.7501 -2.1501 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260184689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:31 Heat of formation + Delta-G solvation = 77.473559 kcal Electronic energy + Delta-G solvation = -17011.570196 eV Core-core repulsion = 14461.987222 eV Total energy + Delta-G solvation = -2549.582973 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.63823 -39.73789 -35.63078 -34.35110 -33.00800 -30.41451 -29.14788 -28.47179 -26.13359 -24.87803 -23.32757 -22.52275 -20.74149 -20.40105 -18.99323 -18.01143 -17.11522 -16.59688 -16.34277 -16.11779 -15.42363 -15.06079 -14.54198 -14.13414 -14.09349 -13.74820 -13.58257 -13.30691 -12.96059 -12.75658 -12.58576 -12.44638 -12.15204 -11.95876 -11.88803 -11.71332 -11.56187 -11.49997 -10.92721 -10.80599 -9.96898 -9.53675 -9.14023 -8.31751 -6.37269 0.43952 0.57022 1.34768 1.37275 1.49346 2.34025 2.77904 2.89084 3.02560 3.38905 3.48881 3.59704 3.81729 4.05439 4.10138 4.28520 4.37382 4.41788 4.58479 4.68927 4.70649 4.77830 4.84502 4.90255 4.94160 4.99943 5.03035 5.12748 5.17022 5.21828 5.28723 5.41891 5.53311 5.56834 5.65871 5.88554 6.01248 6.24927 6.47422 6.68659 7.26135 8.85115 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038172 B = 0.005354 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.348483 B = 5228.274708 C = 5401.781344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.248 1.248 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.025 0.975 9 C 0.022 3.978 10 C -0.052 4.052 11 C -0.143 4.143 12 C -0.104 4.104 13 C -0.170 4.170 14 C 0.079 3.921 15 N -0.476 5.476 16 C 0.023 3.977 17 C -0.132 4.132 18 C -0.160 4.160 19 C 0.013 3.987 20 C -0.127 4.127 21 C -0.124 4.124 22 H 0.268 0.732 23 H 0.027 0.973 24 H 0.034 0.966 25 H 0.122 0.878 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.292 -14.208 -3.338 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.172 1.172 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.043 0.957 9 C -0.015 4.015 10 C -0.053 4.053 11 C -0.161 4.161 12 C -0.122 4.122 13 C -0.190 4.190 14 C -0.016 4.016 15 N -0.196 5.196 16 C -0.103 4.103 17 C -0.150 4.150 18 C -0.198 4.198 19 C -0.093 4.093 20 C -0.165 4.165 21 C -0.143 4.143 22 H 0.077 0.923 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.140 0.860 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.152 0.848 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.782 -13.796 -3.797 22.054 hybrid contribution -0.261 0.736 0.577 0.971 sum 16.520 -13.060 -3.220 21.304 Atomic orbital electron populations 1.70060 1.08342 1.28338 1.52211 1.25998 0.95632 1.03438 0.93822 0.85624 0.79388 0.77947 0.79525 1.18589 1.17172 1.20683 1.21135 0.90780 0.92985 1.51025 0.95708 1.18652 0.94356 0.91074 0.97467 1.20092 0.94664 0.97031 0.93481 1.21217 1.01391 0.96032 0.97438 1.21276 0.98229 0.93821 0.98877 1.21779 1.03688 1.01333 0.92157 1.19069 0.99059 0.93506 0.89922 1.64296 1.16223 1.12193 1.26839 1.24092 0.97867 0.86010 1.02332 1.24625 0.92513 0.99856 0.98018 1.24613 1.00043 0.96011 0.99154 1.24867 0.86617 0.98185 0.99660 1.23861 1.02702 0.94464 0.95424 1.20763 1.01369 0.94838 0.97321 0.92283 0.95496 0.94815 0.86045 0.83291 0.83548 0.90775 0.88970 0.84826 0.91617 0.86095 0.87250 0.86695 0.91858 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 2 C 0.01 0.48 5.47 84.66 0.46 0.95 16 3 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.52 -31.43 9.65 25.60 0.25 -31.18 16 8 H 0.02 1.67 7.98 -2.91 -0.02 1.65 16 9 C 0.02 1.08 4.17 29.10 0.12 1.20 16 10 C -0.05 -2.31 5.07 -19.88 -0.10 -2.41 16 11 C -0.14 -5.46 9.70 22.29 0.22 -5.25 16 12 C -0.10 -3.20 10.04 22.25 0.22 -2.98 16 13 C -0.17 -5.06 7.24 22.40 0.16 -4.90 16 14 C 0.08 2.73 4.99 38.21 0.19 2.93 16 15 N -0.48 -14.17 5.66 -661.39 -3.74 -17.91 16 16 C 0.02 0.55 6.52 87.08 0.57 1.12 16 17 C -0.13 -2.16 6.39 -11.59 -0.07 -2.24 16 18 C -0.16 -2.77 7.41 28.20 0.21 -2.56 16 19 C 0.01 0.30 5.79 41.96 0.24 0.54 16 20 C -0.13 -2.19 7.48 27.61 0.21 -1.98 16 21 C -0.12 -5.18 9.62 22.40 0.22 -4.97 16 22 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 23 H 0.03 1.32 7.14 -2.39 -0.02 1.30 16 24 H 0.03 1.59 7.51 -2.39 -0.02 1.57 16 25 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 26 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 27 H 0.15 3.46 4.94 -2.91 -0.01 3.45 16 28 H 0.07 1.74 5.74 -2.39 -0.01 1.73 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.07 1.28 5.30 -2.39 -0.01 1.27 16 32 H 0.12 1.50 7.87 -2.38 -0.02 1.48 16 33 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.11 1.39 7.86 -2.39 -0.02 1.37 16 35 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 36 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -70.31 286.74 2.34 -67.97 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.01 Total: 15.47 kcal Atomic # 6 Polarization: -54.62 SS G_CDS: 2.89 Total: -51.73 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -3.44 Total: -78.48 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -70.31 2.34 -67.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.444 kcal (2) G-P(sol) polarization free energy of solvation -70.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds