Wall clock time and date at job start Mon Mar 30 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86801 * 119.99699 * 2 1 4 4 H 1.48504 * 109.47054 * 239.99556 * 3 2 1 5 5 H 1.48497 * 109.47606 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47366 * 120.00023 * 3 2 1 7 7 C 1.39862 * 120.00505 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00548 * 195.14513 * 7 2 1 9 9 C 1.41141 * 119.99430 * 15.14898 * 7 2 1 10 10 C 1.40901 * 120.30609 * 24.97939 * 9 7 2 11 11 C 1.36112 * 120.02491 * 179.69710 * 10 9 7 12 12 C 1.40126 * 120.51373 * 0.04558 * 11 10 9 13 13 C 1.39684 * 119.43735 * 0.33976 * 12 11 10 14 14 C 1.36149 * 120.74702 * 359.50256 * 13 12 11 15 15 C 1.51631 * 107.82205 * 179.17383 * 13 12 11 16 16 C 1.54596 * 102.73776 * 344.27165 * 15 13 12 17 17 N 1.39293 * 129.67074 * 180.76331 * 12 11 10 18 18 C 1.46898 * 111.00140 * 320.35312 * 17 12 11 19 19 C 1.53786 * 113.61544 * 168.97510 * 18 17 12 20 20 C 1.53959 * 87.02044 * 220.05043 * 19 18 17 21 21 C 1.53781 * 113.61346 * 71.36794 * 18 17 12 22 22 H 0.96996 * 120.00421 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.98246 * 359.67546 * 10 9 7 24 24 H 1.08007 * 119.74039 * 180.02562 * 11 10 9 25 25 H 1.08003 * 120.05927 * 180.25964 * 14 13 12 26 26 H 1.09001 * 110.75618 * 102.58477 * 15 13 12 27 27 H 1.09005 * 110.76299 * 225.95862 * 15 13 12 28 28 H 1.08992 * 110.77470 * 267.26086 * 16 15 13 29 29 H 1.09005 * 110.93414 * 143.91675 * 16 15 13 30 30 H 1.08996 * 112.85330 * 300.17371 * 18 17 12 31 31 H 1.09000 * 113.61055 * 334.56671 * 19 18 17 32 32 H 1.08997 * 113.61312 * 105.47157 * 19 18 17 33 33 H 1.09004 * 113.53649 * 270.81170 * 20 19 18 34 34 H 1.08992 * 113.66732 * 139.93219 * 20 19 18 35 35 H 1.09001 * 113.61391 * 254.52810 * 21 18 17 36 36 H 1.08997 * 113.61836 * 25.34922 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6966 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0602 -1.2273 0.2449 9 6 1.3395 -2.4124 -0.3184 10 6 0.1804 -2.3897 -1.1192 11 6 -0.4567 -3.5522 -1.4283 12 6 0.0302 -4.7779 -0.9551 13 6 1.1747 -4.7991 -0.1546 14 6 1.8250 -3.6452 0.1608 15 6 1.4516 -6.2417 0.2213 16 6 0.1173 -6.9447 -0.1188 17 7 -0.4547 -6.0672 -1.1625 18 6 -1.9230 -6.0901 -1.1229 19 6 -2.5317 -7.4169 -1.6066 20 6 -3.6107 -6.5729 -2.3093 21 6 -2.5826 -5.4298 -2.3450 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2028 -1.4496 -1.4876 24 1 -1.3445 -3.5295 -2.0429 25 1 2.7113 -3.6749 0.7772 26 1 2.2661 -6.6477 -0.3786 27 1 1.6736 -6.3282 1.2850 28 1 -0.5338 -6.9816 0.7545 29 1 0.2937 -7.9466 -0.5103 30 1 -2.3261 -5.7464 -0.1703 31 1 -1.8899 -7.9662 -2.2954 32 1 -2.9194 -8.0391 -0.8001 33 1 -4.4762 -6.3623 -1.6811 34 1 -3.8836 -6.9457 -3.2965 35 1 -3.0114 -4.4502 -2.1337 36 1 -1.9543 -5.4336 -3.2357 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260192635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:21 Heat of formation + Delta-G solvation = 47.877779 kcal Electronic energy + Delta-G solvation = -17256.590526 eV Core-core repulsion = 14705.724183 eV Total energy + Delta-G solvation = -2550.866343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89754 -37.57538 -35.47641 -32.94281 -31.04220 -28.96422 -27.60225 -25.66177 -24.83547 -23.74470 -21.55134 -20.03849 -19.94344 -19.04206 -16.98737 -16.06368 -15.50109 -15.04865 -14.83607 -14.26701 -13.61989 -13.35635 -12.65588 -12.49328 -12.17575 -12.00768 -11.71788 -11.58933 -11.36879 -11.31316 -11.20126 -10.92845 -10.82162 -10.57985 -10.49224 -10.05696 -9.95388 -9.79559 -9.27489 -9.16508 -8.51440 -7.43084 -6.76673 -6.61121 -4.22355 2.76766 3.05026 3.08553 3.11180 3.20388 3.95967 4.48305 4.74228 4.86200 4.95244 5.13742 5.17917 5.41352 5.51917 5.70243 5.77906 5.82416 5.91872 6.01712 6.06838 6.12363 6.23019 6.28793 6.41067 6.47639 6.52349 6.62569 6.86509 6.93323 7.13523 7.24400 7.45629 7.52339 7.75175 8.08106 8.18757 8.21157 8.38842 8.67544 8.93183 9.03364 10.24306 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034660 B = 0.006250 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.648431 B = 4479.037218 C = 5159.963804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.147 4.147 11 C -0.106 4.106 12 C -0.042 4.042 13 C -0.108 4.108 14 C -0.193 4.193 15 C -0.080 4.080 16 C 0.049 3.951 17 N -0.454 5.454 18 C 0.051 3.949 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.124 4.124 22 H 0.279 0.721 23 H 0.124 0.876 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 -8.339 -1.685 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.167 4.167 11 C -0.127 4.127 12 C -0.138 4.138 13 C -0.110 4.110 14 C -0.213 4.213 15 C -0.118 4.118 16 C -0.078 4.078 17 N -0.171 5.171 18 C -0.057 4.057 19 C -0.167 4.167 20 C -0.182 4.182 21 C -0.162 4.162 22 H 0.090 0.910 23 H 0.142 0.858 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.944 -8.401 -2.167 9.531 hybrid contribution 0.112 1.073 0.843 1.369 sum -3.832 -7.328 -1.324 8.375 Atomic orbital electron populations 1.69827 1.07449 1.29055 1.36370 1.25869 0.94760 1.01179 0.92458 0.86357 0.80057 0.80315 0.79890 1.18900 1.20410 1.19108 1.19427 0.97041 0.90895 1.41570 0.90635 1.17520 0.91807 0.91653 0.89297 1.20953 0.98663 0.96474 1.00639 1.20075 0.99861 0.90734 1.02002 1.18963 0.99739 0.88217 1.06898 1.19786 0.97741 0.93242 1.00278 1.20044 1.02980 0.91567 1.06678 1.21171 0.96814 0.93572 1.00227 1.23023 0.95175 0.96833 0.92744 1.61065 1.05155 1.07175 1.43703 1.23252 0.88293 0.96681 0.97438 1.22992 0.97556 0.96159 1.00001 1.22788 0.96844 0.97970 1.00554 1.22974 0.96996 0.97414 0.98828 0.90979 0.85801 0.88866 0.89151 0.91071 0.91839 0.93914 0.90602 0.92076 0.89600 0.92253 0.90623 0.91544 0.91502 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.84 10.82 55.54 0.60 -20.24 16 2 C 0.07 1.87 5.19 -17.34 -0.09 1.78 16 3 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.30 9.05 -37.87 -0.34 -12.65 16 8 H 0.08 1.94 7.89 -52.49 -0.41 1.53 16 9 C 0.10 2.70 5.58 -106.78 -0.60 2.11 16 10 C -0.15 -3.88 8.63 -39.34 -0.34 -4.22 16 11 C -0.11 -2.55 9.26 -39.64 -0.37 -2.91 16 12 C -0.04 -0.96 5.92 -83.22 -0.49 -1.46 16 13 C -0.11 -2.50 6.17 -104.37 -0.64 -3.14 16 14 C -0.19 -4.84 9.74 -39.33 -0.38 -5.23 16 15 C -0.08 -1.48 7.05 -26.59 -0.19 -1.67 16 16 C 0.05 0.83 6.60 -2.45 -0.02 0.82 16 17 N -0.45 -8.74 4.96 -160.39 -0.80 -9.54 16 18 C 0.05 0.86 2.78 -66.90 -0.19 0.67 16 19 C -0.13 -1.72 7.54 -25.82 -0.19 -1.91 16 20 C -0.14 -1.79 8.09 -25.82 -0.21 -2.00 16 21 C -0.12 -1.93 5.74 -25.92 -0.15 -2.08 16 22 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 23 H 0.12 3.35 6.07 -52.49 -0.32 3.03 16 24 H 0.09 2.03 5.32 -52.48 -0.28 1.76 16 25 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.70 7.88 -51.93 -0.41 0.29 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.06 7.23 -51.93 -0.38 0.69 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -27.67 288.03 -10.24 -37.91 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.16 Total: 5.60 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -4.20 Total: -31.89 kcal Atomic # 7 Polarization: -29.58 SS G_CDS: -0.19 Total: -29.78 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.67 -10.24 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260192635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.786 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds