Wall clock time and date at job start Mon Mar 30 2020 05:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86801 * 119.99699 * 2 1 4 4 H 1.48504 * 109.47054 * 239.99556 * 3 2 1 5 5 H 1.48497 * 109.47606 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47366 * 120.00023 * 3 2 1 7 7 C 1.39862 * 120.00505 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00548 * 195.14513 * 7 2 1 9 9 C 1.41141 * 119.99430 * 15.14898 * 7 2 1 10 10 C 1.40901 * 120.30609 * 24.97939 * 9 7 2 11 11 C 1.36112 * 120.02491 * 179.69710 * 10 9 7 12 12 C 1.40126 * 120.51373 * 0.04558 * 11 10 9 13 13 C 1.39684 * 119.43735 * 0.33976 * 12 11 10 14 14 C 1.36149 * 120.74702 * 359.50256 * 13 12 11 15 15 C 1.51631 * 107.82205 * 179.17383 * 13 12 11 16 16 C 1.54596 * 102.73776 * 344.27165 * 15 13 12 17 17 N 1.39293 * 129.67074 * 180.76331 * 12 11 10 18 18 C 1.46898 * 111.00140 * 320.35312 * 17 12 11 19 19 C 1.53786 * 113.61544 * 168.97510 * 18 17 12 20 20 C 1.53959 * 87.02044 * 220.05043 * 19 18 17 21 21 C 1.53781 * 113.61346 * 71.36794 * 18 17 12 22 22 H 0.96996 * 120.00421 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.98246 * 359.67546 * 10 9 7 24 24 H 1.08007 * 119.74039 * 180.02562 * 11 10 9 25 25 H 1.08003 * 120.05927 * 180.25964 * 14 13 12 26 26 H 1.09001 * 110.75618 * 102.58477 * 15 13 12 27 27 H 1.09005 * 110.76299 * 225.95862 * 15 13 12 28 28 H 1.08992 * 110.77470 * 267.26086 * 16 15 13 29 29 H 1.09005 * 110.93414 * 143.91675 * 16 15 13 30 30 H 1.08996 * 112.85330 * 300.17371 * 18 17 12 31 31 H 1.09000 * 113.61055 * 334.56671 * 19 18 17 32 32 H 1.08997 * 113.61312 * 105.47157 * 19 18 17 33 33 H 1.09004 * 113.53649 * 270.81170 * 20 19 18 34 34 H 1.08992 * 113.66732 * 139.93219 * 20 19 18 35 35 H 1.09001 * 113.61391 * 254.52810 * 21 18 17 36 36 H 1.08997 * 113.61836 * 25.34922 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6966 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0602 -1.2273 0.2449 9 6 1.3395 -2.4124 -0.3184 10 6 0.1804 -2.3897 -1.1192 11 6 -0.4567 -3.5522 -1.4283 12 6 0.0302 -4.7779 -0.9551 13 6 1.1747 -4.7991 -0.1546 14 6 1.8250 -3.6452 0.1608 15 6 1.4516 -6.2417 0.2213 16 6 0.1173 -6.9447 -0.1188 17 7 -0.4547 -6.0672 -1.1625 18 6 -1.9230 -6.0901 -1.1229 19 6 -2.5317 -7.4169 -1.6066 20 6 -3.6107 -6.5729 -2.3093 21 6 -2.5826 -5.4298 -2.3450 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2028 -1.4496 -1.4876 24 1 -1.3445 -3.5295 -2.0429 25 1 2.7113 -3.6749 0.7772 26 1 2.2661 -6.6477 -0.3786 27 1 1.6736 -6.3282 1.2850 28 1 -0.5338 -6.9816 0.7545 29 1 0.2937 -7.9466 -0.5103 30 1 -2.3261 -5.7464 -0.1703 31 1 -1.8899 -7.9662 -2.2954 32 1 -2.9194 -8.0391 -0.8001 33 1 -4.4762 -6.3623 -1.6811 34 1 -3.8836 -6.9457 -3.2965 35 1 -3.0114 -4.4502 -2.1337 36 1 -1.9543 -5.4336 -3.2357 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260192635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:20 Heat of formation + Delta-G solvation = 33.703546 kcal Electronic energy + Delta-G solvation = -17257.205167 eV Core-core repulsion = 14705.724183 eV Total energy + Delta-G solvation = -2551.480984 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43879 -39.03161 -37.17199 -34.79792 -32.71193 -30.78437 -29.29273 -27.20240 -26.25496 -25.09977 -23.22898 -21.85664 -21.56914 -20.29954 -18.89215 -17.54723 -17.16538 -16.57677 -16.36699 -15.80721 -15.34378 -14.72587 -14.35369 -14.09063 -13.77302 -13.38341 -13.31786 -13.24567 -12.89643 -12.84063 -12.71281 -12.55938 -12.33718 -12.24557 -11.75844 -11.65377 -11.38877 -11.24476 -11.05654 -10.90034 -10.21969 -9.34760 -8.64378 -8.42815 -6.20799 0.93648 1.11083 1.37870 1.49129 1.52465 2.21827 2.68560 3.18289 3.65502 3.70333 3.81410 3.88085 3.95150 4.07273 4.13185 4.38842 4.49162 4.62985 4.76241 4.82569 4.85536 4.92224 4.97079 5.03182 5.07494 5.08427 5.12514 5.21260 5.34760 5.44063 5.49588 5.62904 5.69764 5.91711 6.13279 6.25737 6.44176 6.57174 6.74347 6.96116 7.09833 8.37377 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034660 B = 0.006250 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.648431 B = 4479.037218 C = 5159.963804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.073 0.927 9 C 0.065 3.935 10 C -0.170 4.170 11 C -0.116 4.116 12 C -0.033 4.033 13 C -0.125 4.125 14 C -0.209 4.209 15 C -0.077 4.077 16 C 0.052 3.948 17 N -0.460 5.460 18 C 0.036 3.964 19 C -0.113 4.113 20 C -0.127 4.127 21 C -0.134 4.134 22 H 0.286 0.714 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 -10.266 -1.770 11.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.091 0.909 9 C 0.062 3.938 10 C -0.190 4.190 11 C -0.137 4.137 12 C -0.130 4.130 13 C -0.128 4.128 14 C -0.229 4.229 15 C -0.114 4.114 16 C -0.074 4.074 17 N -0.177 5.177 18 C -0.071 4.071 19 C -0.150 4.150 20 C -0.165 4.165 21 C -0.171 4.171 22 H 0.097 0.903 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.500 -10.362 -2.250 11.519 hybrid contribution 0.222 1.512 0.845 1.746 sum -4.278 -8.850 -1.405 9.930 Atomic orbital electron populations 1.69894 1.08901 1.30309 1.36919 1.26733 0.95553 1.04429 0.91403 0.85231 0.78695 0.75640 0.79975 1.18576 1.19182 1.18414 1.19668 0.97218 0.92141 1.43744 0.90872 1.17876 0.92712 0.92810 0.90364 1.20884 0.99481 0.96720 1.01908 1.20246 1.00248 0.90875 1.02324 1.19262 0.99334 0.89442 1.04948 1.20340 0.97447 0.95211 0.99773 1.20218 1.03477 0.92056 1.07125 1.21281 0.98315 0.90229 1.01612 1.23173 0.94039 0.97552 0.92622 1.60998 1.06933 1.05128 1.44637 1.23440 0.86506 0.99861 0.97277 1.22928 0.97089 0.94575 1.00443 1.22746 0.96277 0.95593 1.01866 1.23000 0.98147 0.98095 0.97904 0.90336 0.87518 0.87463 0.88819 0.89570 0.90137 0.93108 0.87161 0.93460 0.89127 0.90205 0.89394 0.89580 0.92840 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.08 10.82 21.81 0.24 -44.84 16 2 C 0.03 1.68 5.19 85.22 0.44 2.12 16 3 Si 0.98 39.44 29.59 68.60 2.03 41.47 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.50 -27.93 9.05 23.38 0.21 -27.71 16 8 H 0.07 3.95 7.89 -2.91 -0.02 3.93 16 9 C 0.06 3.69 5.58 -21.26 -0.12 3.57 16 10 C -0.17 -9.41 8.63 22.43 0.19 -9.22 16 11 C -0.12 -5.75 9.26 22.23 0.21 -5.55 16 12 C -0.03 -1.51 5.92 38.76 0.23 -1.28 16 13 C -0.13 -5.77 6.17 -19.70 -0.12 -5.89 16 14 C -0.21 -10.83 9.74 22.43 0.22 -10.61 16 15 C -0.08 -2.66 7.05 30.69 0.22 -2.44 16 16 C 0.05 1.59 6.60 86.66 0.57 2.16 16 17 N -0.46 -16.82 4.96 -661.35 -3.28 -20.10 16 18 C 0.04 1.15 2.78 45.44 0.13 1.28 16 19 C -0.11 -2.57 7.54 31.18 0.24 -2.33 16 20 C -0.13 -2.75 8.09 31.18 0.25 -2.49 16 21 C -0.13 -3.98 5.74 31.12 0.18 -3.80 16 22 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 23 H 0.11 6.15 6.07 -2.91 -0.02 6.14 16 24 H 0.11 4.84 5.32 -2.91 -0.02 4.82 16 25 H 0.09 4.62 8.06 -2.91 -0.02 4.59 16 26 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.05 1.48 7.88 -2.39 -0.02 1.47 16 29 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.70 7.23 -2.39 -0.02 1.68 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -62.31 288.03 2.89 -59.42 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 1.06 Total: 26.24 kcal Atomic # 6 Polarization: -65.03 SS G_CDS: 2.84 Total: -62.19 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -3.04 Total: -64.94 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -62.31 2.89 -59.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260192635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.122 kcal (2) G-P(sol) polarization free energy of solvation -62.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds