Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.36843 * 125.03147 * 2 1 4 4 H 0.96995 * 125.05947 * 359.97438 * 3 2 1 5 5 C 1.37687 * 109.87414 * 179.97438 * 3 2 1 6 6 C 1.40706 * 107.15632 * 359.97438 * 5 3 2 7 7 C 1.39591 * 119.93316 * 180.02562 * 6 5 3 8 8 C 1.36661 * 119.76058 * 359.97438 * 7 6 5 9 9 C 1.38788 * 120.53170 * 359.74744 * 8 7 6 10 10 C 1.37786 * 120.66290 * 0.51579 * 9 8 7 11 11 C 1.50702 * 120.11026 * 179.76522 * 10 9 8 12 12 C 1.53001 * 109.47327 * 264.72208 * 11 10 9 13 13 C 1.50697 * 109.46995 * 179.97438 * 12 11 10 14 14 H 1.07991 * 120.00449 * 359.72153 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.34236 * 125.03337 * 179.97438 * 2 1 3 22 22 C 1.50700 * 126.49988 * 359.97438 * 21 2 1 23 23 H 1.09004 * 109.47091 * 89.98196 * 1 2 3 24 24 H 1.08998 * 109.46936 * 209.97685 * 1 2 3 25 25 H 1.08994 * 109.46974 * 329.97695 * 1 2 3 26 26 H 1.07996 * 120.11675 * 180.02562 * 7 6 5 27 27 H 1.08006 * 119.73260 * 179.97438 * 8 7 6 28 28 H 1.07995 * 119.66835 * 180.25218 * 9 8 7 29 29 H 1.08998 * 109.47519 * 144.71910 * 11 10 9 30 30 H 1.09006 * 109.47270 * 24.72140 * 11 10 9 31 31 H 1.08998 * 109.47065 * 59.99424 * 12 11 10 32 32 H 1.09001 * 109.46892 * 299.99688 * 12 11 10 33 33 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47044 * 89.97963 * 22 21 2 35 35 H 1.08994 * 109.47303 * 209.97858 * 22 21 2 36 36 H 1.09000 * 109.47374 * 329.98035 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1205 0.0000 4 1 1.9622 2.0325 -0.0004 5 6 3.6215 0.7605 0.0006 6 6 3.6705 -0.6457 0.0016 7 6 4.9038 -1.2996 0.0029 8 6 6.0589 -0.5693 0.0026 9 6 6.0159 0.8179 -0.0041 10 6 4.8096 1.4836 -0.0001 11 6 4.7775 2.9903 -0.0022 12 6 4.6400 3.4996 1.4340 13 6 4.6086 5.0062 1.4319 14 1 4.6841 5.5466 0.5000 15 6 4.4886 5.6949 2.6204 16 7 4.3961 5.0368 3.7553 17 14 4.4574 7.5626 2.6185 18 1 3.0551 8.0341 2.4909 19 1 5.0361 8.0685 3.8891 20 1 5.2563 8.0699 1.4741 21 6 2.2776 -1.0991 0.0005 22 6 1.8002 -2.5285 0.0017 23 1 -0.3633 0.0003 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 4.9449 -2.3788 0.0032 27 1 7.0129 -1.0757 0.0041 28 1 6.9373 1.3812 -0.0083 29 1 3.9286 3.3349 -0.5927 30 1 5.7013 3.3728 -0.4364 31 1 5.4889 3.1550 2.0245 32 1 3.7162 3.1171 1.8682 33 1 4.3114 5.5213 4.5913 34 1 1.6844 -2.8738 -1.0257 35 1 2.5296 -3.1548 0.5153 36 1 0.8413 -2.5910 0.5162 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260194785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = 23.812784 kcal Electronic energy + Delta-G solvation = -16793.591390 eV Core-core repulsion = 14241.681510 eV Total energy + Delta-G solvation = -2551.909879 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.00043 -36.98769 -34.22823 -32.81169 -31.60713 -30.58894 -28.58784 -27.48316 -25.62796 -24.75902 -21.83568 -21.22659 -20.01034 -18.50886 -17.10804 -16.38313 -15.68258 -14.78805 -14.72722 -14.47991 -13.95655 -13.23477 -13.08142 -12.82677 -12.73118 -12.56650 -12.40706 -12.24073 -12.00217 -11.67348 -11.35236 -11.10560 -10.99722 -10.86246 -10.67433 -10.33035 -9.87343 -9.65469 -9.12648 -8.75128 -8.38552 -7.68864 -7.06880 -6.02519 -4.06505 1.57346 2.10944 2.96133 3.28747 3.35508 3.38849 3.51563 4.36058 4.44347 4.86436 5.16378 5.29771 5.32492 5.33344 5.45162 5.48944 5.50668 5.72842 5.79020 5.87151 5.91436 6.00185 6.10170 6.15596 6.34911 6.46160 6.53788 6.64841 6.97417 7.03481 7.09574 7.16561 7.25392 7.64668 7.64854 7.78098 7.95311 7.97275 8.37186 9.00892 9.57858 11.08152 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.005874 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.995967 B = 4765.619697 C = 5482.851102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.075 3.925 3 N -0.584 5.584 4 H 0.417 0.583 5 C 0.105 3.895 6 C -0.102 4.102 7 C -0.095 4.095 8 C -0.140 4.140 9 C -0.113 4.113 10 C -0.064 4.064 11 C -0.077 4.077 12 C 0.031 3.969 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.187 4.187 22 C -0.069 4.069 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.910 -12.620 -8.161 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.034 4.034 3 N -0.187 5.187 4 H 0.254 0.746 5 C -0.002 4.002 6 C -0.107 4.107 7 C -0.114 4.114 8 C -0.159 4.159 9 C -0.133 4.133 10 C -0.066 4.066 11 C -0.115 4.115 12 C -0.006 4.006 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.194 4.194 22 C -0.127 4.127 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.000 -12.473 -7.967 15.622 hybrid contribution -0.082 1.592 0.237 1.612 sum -5.082 -10.880 -7.730 14.282 Atomic orbital electron populations 1.20435 0.88274 1.03504 1.02677 1.20025 0.93022 0.85801 1.04530 1.41707 1.04211 1.08161 1.64585 0.74584 1.18023 0.84336 0.93448 1.04386 1.19007 0.92938 0.91936 1.06771 1.20034 0.90629 0.98710 1.02024 1.20530 0.97496 0.93964 1.03900 1.20694 0.96558 0.93948 1.02066 1.19379 0.89890 0.96692 1.00652 1.20756 1.01117 0.88103 1.01500 1.19057 0.97369 0.95278 0.88875 1.21258 1.50481 0.91706 0.92806 0.92636 1.25031 0.95278 0.98414 0.95628 1.69981 1.50066 1.35425 0.97719 0.86600 0.78169 0.85782 0.77499 1.20711 1.21160 1.19821 1.19910 0.90805 0.94361 1.14359 1.20021 1.00264 0.91433 1.00960 0.90833 0.90025 0.91347 0.86966 0.86695 0.86045 0.93159 0.91909 0.96260 0.96876 0.92958 0.92481 0.92224 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.18 36.00 0.37 -0.58 16 2 C 0.08 1.11 7.08 -81.77 -0.58 0.53 16 3 N -0.58 -9.91 6.07 -6.95 -0.04 -9.95 16 4 H 0.42 6.66 8.96 -40.82 -0.37 6.29 16 5 C 0.11 2.00 6.97 -83.99 -0.59 1.42 16 6 C -0.10 -1.80 6.35 -105.14 -0.67 -2.47 16 7 C -0.10 -1.53 10.05 -39.65 -0.40 -1.93 16 8 C -0.14 -2.22 9.97 -39.95 -0.40 -2.62 16 9 C -0.11 -2.03 9.65 -39.54 -0.38 -2.41 16 10 C -0.06 -1.26 5.15 -104.47 -0.54 -1.80 16 11 C -0.08 -1.65 5.29 -27.88 -0.15 -1.80 16 12 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 13 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.19 -2.86 6.31 -102.71 -0.65 -3.51 16 22 C -0.07 -0.79 10.17 36.01 0.37 -0.43 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.72 7.04 -51.93 -0.37 0.36 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 28 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 30 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.56 7.05 -51.93 -0.37 0.20 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -32.06 305.21 -9.17 -41.24 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.28 Total: 2.36 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -4.16 Total: -28.50 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.69 Total: -36.30 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.06 -9.17 -41.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.050 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds