Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.36843 * 125.03147 * 2 1 4 4 H 0.96995 * 125.05947 * 359.97438 * 3 2 1 5 5 C 1.37687 * 109.87414 * 179.97438 * 3 2 1 6 6 C 1.40706 * 107.15632 * 359.97438 * 5 3 2 7 7 C 1.39591 * 119.93316 * 180.02562 * 6 5 3 8 8 C 1.36661 * 119.76058 * 359.97438 * 7 6 5 9 9 C 1.38788 * 120.53170 * 359.74744 * 8 7 6 10 10 C 1.37786 * 120.66290 * 0.51579 * 9 8 7 11 11 C 1.50702 * 120.11026 * 179.76522 * 10 9 8 12 12 C 1.53001 * 109.47327 * 264.72208 * 11 10 9 13 13 C 1.50697 * 109.46995 * 179.97438 * 12 11 10 14 14 H 1.07991 * 120.00449 * 359.72153 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.34236 * 125.03337 * 179.97438 * 2 1 3 22 22 C 1.50700 * 126.49988 * 359.97438 * 21 2 1 23 23 H 1.09004 * 109.47091 * 89.98196 * 1 2 3 24 24 H 1.08998 * 109.46936 * 209.97685 * 1 2 3 25 25 H 1.08994 * 109.46974 * 329.97695 * 1 2 3 26 26 H 1.07996 * 120.11675 * 180.02562 * 7 6 5 27 27 H 1.08006 * 119.73260 * 179.97438 * 8 7 6 28 28 H 1.07995 * 119.66835 * 180.25218 * 9 8 7 29 29 H 1.08998 * 109.47519 * 144.71910 * 11 10 9 30 30 H 1.09006 * 109.47270 * 24.72140 * 11 10 9 31 31 H 1.08998 * 109.47065 * 59.99424 * 12 11 10 32 32 H 1.09001 * 109.46892 * 299.99688 * 12 11 10 33 33 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47044 * 89.97963 * 22 21 2 35 35 H 1.08994 * 109.47303 * 209.97858 * 22 21 2 36 36 H 1.09000 * 109.47374 * 329.98035 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1205 0.0000 4 1 1.9622 2.0325 -0.0004 5 6 3.6215 0.7605 0.0006 6 6 3.6705 -0.6457 0.0016 7 6 4.9038 -1.2996 0.0029 8 6 6.0589 -0.5693 0.0026 9 6 6.0159 0.8179 -0.0041 10 6 4.8096 1.4836 -0.0001 11 6 4.7775 2.9903 -0.0022 12 6 4.6400 3.4996 1.4340 13 6 4.6086 5.0062 1.4319 14 1 4.6841 5.5466 0.5000 15 6 4.4886 5.6949 2.6204 16 7 4.3961 5.0368 3.7553 17 14 4.4574 7.5626 2.6185 18 1 3.0551 8.0341 2.4909 19 1 5.0361 8.0685 3.8891 20 1 5.2563 8.0699 1.4741 21 6 2.2776 -1.0991 0.0005 22 6 1.8002 -2.5285 0.0017 23 1 -0.3633 0.0003 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 4.9449 -2.3788 0.0032 27 1 7.0129 -1.0757 0.0041 28 1 6.9373 1.3812 -0.0083 29 1 3.9286 3.3349 -0.5927 30 1 5.7013 3.3728 -0.4364 31 1 5.4889 3.1550 2.0245 32 1 3.7162 3.1171 1.8682 33 1 4.3114 5.5213 4.5913 34 1 1.6844 -2.8738 -1.0257 35 1 2.5296 -3.1548 0.5153 36 1 0.8413 -2.5910 0.5162 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260194785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = 6.370751 kcal Electronic energy + Delta-G solvation = -16794.347733 eV Core-core repulsion = 14241.681510 eV Total energy + Delta-G solvation = -2552.666223 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.24618 -38.30785 -36.02668 -34.43723 -33.11075 -31.71501 -30.26847 -28.58120 -27.03689 -26.37382 -23.56720 -22.65131 -21.44977 -19.73230 -18.62630 -18.31951 -16.94887 -16.56897 -16.07917 -15.84115 -15.33452 -14.76666 -14.51709 -14.24244 -13.91505 -13.81682 -13.60996 -13.45993 -13.27223 -13.00648 -12.85274 -12.73013 -12.64836 -12.26073 -12.14327 -11.92601 -11.71636 -11.56673 -11.13959 -10.61125 -10.13162 -8.98855 -8.35089 -8.21846 -6.37191 0.26947 0.78451 1.37113 1.38838 1.50360 1.76961 2.30647 2.37435 3.03280 3.08658 3.79409 3.91685 4.08976 4.21718 4.37043 4.44105 4.46397 4.54521 4.67981 4.73997 4.77520 4.90665 5.00012 5.03176 5.07688 5.11355 5.15145 5.27192 5.37978 5.43193 5.53888 5.73837 5.77097 5.82663 5.92276 6.04476 6.17090 6.36768 6.71056 6.79599 7.32884 8.87668 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.005874 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.995967 B = 4765.619697 C = 5482.851102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.068 3.932 3 N -0.594 5.594 4 H 0.415 0.585 5 C 0.075 3.925 6 C -0.123 4.123 7 C -0.092 4.092 8 C -0.142 4.142 9 C -0.123 4.123 10 C -0.097 4.097 11 C -0.060 4.060 12 C 0.044 3.956 13 C -0.545 4.545 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C -0.199 4.199 22 C -0.066 4.066 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.148 0.852 28 H 0.127 0.873 29 H 0.053 0.947 30 H 0.065 0.935 31 H -0.014 1.014 32 H -0.016 1.016 33 H 0.264 0.736 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 -13.450 -8.991 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 N -0.197 5.197 4 H 0.252 0.748 5 C -0.032 4.032 6 C -0.128 4.128 7 C -0.111 4.111 8 C -0.161 4.161 9 C -0.142 4.142 10 C -0.100 4.100 11 C -0.097 4.097 12 C 0.006 3.994 13 C -0.583 4.583 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.206 4.206 22 C -0.123 4.123 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.088 0.912 26 H 0.162 0.838 27 H 0.166 0.834 28 H 0.145 0.855 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.004 0.996 32 H 0.002 0.998 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.727 -13.319 -8.815 16.968 hybrid contribution 0.131 1.768 0.501 1.842 sum -5.595 -11.552 -8.314 15.293 Atomic orbital electron populations 1.20579 0.85134 1.04587 1.04228 1.20801 0.94985 0.84949 1.03250 1.41893 1.04034 1.08846 1.64932 0.74810 1.18289 0.84901 0.94569 1.05458 1.19530 0.94840 0.91559 1.06845 1.20468 0.90016 1.00352 1.00236 1.20874 0.99149 0.93062 1.03049 1.20948 0.96169 0.95331 1.01755 1.19333 0.91360 0.95531 1.03741 1.20450 1.01279 0.89944 0.98068 1.18842 0.94340 0.94736 0.91439 1.21679 1.50463 0.92816 0.93340 0.91912 1.26017 0.94513 1.04111 0.95050 1.70127 1.50944 1.37765 0.98513 0.85408 0.78719 0.78841 0.77850 1.19595 1.20729 1.18592 1.20431 0.89696 0.96430 1.14056 1.20104 1.01192 0.88805 1.02224 0.88916 0.87948 0.91202 0.83850 0.83400 0.85468 0.92848 0.91597 0.99585 0.99750 0.92732 0.91053 0.91839 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 10.18 71.24 0.72 -0.92 16 2 C 0.07 1.95 7.08 40.86 0.29 2.24 16 3 N -0.59 -20.64 6.07 -175.91 -1.07 -21.71 16 4 H 0.41 13.91 8.96 -92.71 -0.83 13.08 16 5 C 0.08 2.93 6.97 39.03 0.27 3.20 16 6 C -0.12 -4.27 6.35 -20.20 -0.13 -4.40 16 7 C -0.09 -2.81 10.05 22.23 0.22 -2.59 16 8 C -0.14 -4.36 9.97 22.03 0.22 -4.14 16 9 C -0.12 -4.46 9.65 22.29 0.22 -4.24 16 10 C -0.10 -3.99 5.15 -19.77 -0.10 -4.09 16 11 C -0.06 -2.68 5.29 29.85 0.16 -2.52 16 12 C 0.04 2.41 4.96 29.85 0.15 2.56 16 13 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 14 H 0.06 3.46 7.74 -2.92 -0.02 3.44 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 17 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 C -0.20 -5.80 6.31 -18.63 -0.12 -5.92 16 22 C -0.07 -1.32 10.17 71.24 0.72 -0.59 16 23 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.10 1.49 7.04 -2.39 -0.02 1.47 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 27 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 28 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.05 2.28 8.12 -2.39 -0.02 2.26 16 30 H 0.07 2.82 8.05 -2.38 -0.02 2.80 16 31 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.23 7.05 -2.39 -0.02 1.22 16 Total: -1.00 -70.94 305.21 4.80 -66.14 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.24 Total: 19.04 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 3.32 Total: -52.27 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -0.78 Total: -79.52 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.94 4.80 -66.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.511 kcal (2) G-P(sol) polarization free energy of solvation -70.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds