Wall clock time and date at job start Mon Mar 30 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37964 * 119.92459 * 2 1 4 4 C 1.39617 * 119.84372 * 179.97438 * 3 2 1 5 5 C 1.43200 * 120.14879 * 179.97438 * 4 3 2 6 6 N 4.80119 * 134.70178 * 0.02562 * 2 1 3 7 7 C 1.39649 * 119.70038 * 359.75840 * 4 3 2 8 8 C 1.37926 * 119.84609 * 0.51726 * 7 4 3 9 9 C 1.50700 * 119.92353 * 179.75262 * 8 7 4 10 10 C 1.52994 * 109.47210 * 118.39134 * 9 8 7 11 11 C 1.53003 * 109.47019 * 358.38728 * 9 8 7 12 12 C 1.50702 * 109.47030 * 238.38997 * 9 8 7 13 13 H 1.07996 * 119.99954 * 240.86260 * 12 9 8 14 14 C 1.37880 * 119.99911 * 60.85872 * 12 9 8 15 15 N 1.31511 * 120.00123 * 351.62034 * 14 12 9 16 16 Si 1.86801 * 119.99656 * 171.34830 * 14 12 9 17 17 H 1.48505 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47522 * 120.00140 * 16 14 12 19 19 H 1.48501 * 109.47009 * 239.99984 * 16 14 12 20 20 C 1.38342 * 119.92489 * 180.02562 * 2 1 3 21 21 C 1.50703 * 119.84504 * 0.02562 * 20 2 1 22 22 H 1.08994 * 109.47513 * 269.97630 * 1 2 3 23 23 H 1.09000 * 109.47133 * 29.97744 * 1 2 3 24 24 H 1.09005 * 109.47284 * 149.97136 * 1 2 3 25 25 H 1.07999 * 120.07676 * 0.02848 * 3 2 1 26 26 H 1.08002 * 120.07443 * 180.27247 * 7 4 3 27 27 H 1.08996 * 109.47315 * 175.97950 * 10 9 8 28 28 H 1.09007 * 109.46979 * 295.97883 * 10 9 8 29 29 H 1.09006 * 109.47232 * 55.97276 * 10 9 8 30 30 H 1.08994 * 109.47093 * 304.73945 * 11 9 8 31 31 H 1.08998 * 109.46887 * 64.74332 * 11 9 8 32 32 H 1.08998 * 109.46589 * 184.73932 * 11 9 8 33 33 H 0.96999 * 119.99982 * 3.31277 * 15 14 12 34 34 H 1.08995 * 109.47371 * 275.80041 * 21 20 2 35 35 H 1.09000 * 109.47290 * 35.80048 * 21 20 2 36 36 H 1.09004 * 109.47051 * 155.80329 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1957 0.0000 4 6 3.5914 1.1937 0.0005 5 6 4.3124 2.4310 0.0000 6 7 4.8842 3.4126 0.0015 7 6 4.2816 -0.0203 0.0062 8 6 3.5809 -1.2083 0.0004 9 6 4.3240 -2.5193 0.0008 10 6 3.9731 -3.3040 1.2665 11 6 5.8301 -2.2519 -0.0324 12 6 3.9293 -3.3209 -1.2128 13 1 3.4610 -4.2866 -1.0931 14 6 4.1659 -2.8211 -2.4758 15 7 4.5819 -1.5826 -2.6257 16 14 3.9029 -3.9058 -3.9737 17 1 3.4425 -5.2487 -3.5378 18 1 2.8773 -3.2925 -4.8553 19 1 5.1805 -4.0389 -4.7190 20 6 2.1971 -1.1990 -0.0005 21 6 1.4384 -2.5011 -0.0017 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5143 25 1 1.6553 2.1310 0.0005 26 1 5.3616 -0.0288 0.0111 27 1 4.4540 -4.2816 1.2330 28 1 4.3229 -2.7568 2.1420 29 1 2.8923 -3.4326 1.3264 30 1 6.0684 -1.6217 -0.8891 31 1 6.1295 -1.7459 0.8854 32 1 6.3652 -3.1977 -0.1170 33 1 4.7683 -1.0359 -1.8464 34 1 1.1653 -2.7634 1.0204 35 1 0.5355 -2.3950 -0.6031 36 1 2.0656 -3.2867 -0.4232 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260194943.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:32 Heat of formation + Delta-G solvation = 41.911521 kcal Electronic energy + Delta-G solvation = -17854.146017 eV Core-core repulsion = 15303.020958 eV Total energy + Delta-G solvation = -2551.125059 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74684 -36.53364 -35.62068 -32.95024 -31.61284 -30.00482 -27.98642 -26.27015 -25.56350 -24.67292 -21.93768 -21.51703 -19.02825 -17.61351 -16.62801 -15.44548 -14.88669 -13.96103 -13.84737 -13.80832 -13.19765 -13.11219 -12.98124 -12.87957 -12.52139 -12.35480 -12.30072 -11.85829 -11.23931 -11.07438 -10.96312 -10.89512 -10.82771 -10.73242 -10.58483 -10.52698 -10.15961 -9.80886 -9.64940 -8.75910 -8.44885 -7.95914 -7.65540 -6.28540 -4.13776 1.44880 2.05114 3.08558 3.40241 3.41697 3.49500 3.54688 4.39296 4.46167 4.50926 5.22362 5.31816 5.45067 5.59007 5.78537 5.86240 5.89309 6.04477 6.13002 6.14978 6.25550 6.35736 6.40784 6.48266 6.50624 6.58444 6.75494 6.78272 6.85780 6.92211 7.01438 7.13691 7.26999 7.35469 7.60505 7.71422 7.91817 8.11523 8.32553 8.80297 9.55221 10.98274 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.009888 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.904657 B = 2831.067204 C = 3134.723774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.049 4.049 5 C 0.274 3.726 6 N -0.451 5.451 7 C -0.080 4.080 8 C -0.021 4.021 9 C 0.079 3.921 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.588 4.588 13 H 0.059 0.941 14 C 0.030 3.970 15 N -0.903 5.903 16 Si 1.063 2.937 17 H -0.288 1.288 18 H -0.288 1.288 19 H -0.287 1.287 20 C -0.033 4.033 21 C -0.142 4.142 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.045 0.955 33 H 0.284 0.716 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 -1.241 5.557 8.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.114 4.114 4 C -0.052 4.052 5 C -0.040 4.040 6 N -0.128 5.128 7 C -0.101 4.101 8 C -0.022 4.022 9 C 0.078 3.922 10 C -0.190 4.190 11 C -0.202 4.202 12 C -0.626 4.626 13 H 0.077 0.923 14 C -0.177 4.177 15 N -0.540 5.540 16 Si 0.892 3.108 17 H -0.214 1.214 18 H -0.215 1.215 19 H -0.214 1.214 20 C -0.034 4.034 21 C -0.197 4.197 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.143 0.857 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.315 0.292 3.905 6.602 hybrid contribution -0.154 -0.130 1.434 1.448 sum -5.468 0.163 5.339 7.644 Atomic orbital electron populations 1.20759 0.91589 1.02573 1.01643 1.19562 0.95642 0.92450 1.02522 1.20651 0.91603 0.97618 1.01558 1.15902 0.92217 0.86671 1.10439 1.25942 0.92809 0.92778 0.92503 1.81133 1.09217 1.11556 1.10851 1.21162 0.99968 0.90482 0.98475 1.20388 0.93221 0.95764 0.92826 1.17430 0.90942 0.88902 0.94903 1.21944 1.01342 0.99344 0.96384 1.22072 0.98237 1.00735 0.99192 1.21669 1.44991 1.05171 0.90721 0.92305 1.25650 0.94120 0.97230 1.00694 1.70742 1.40872 1.06646 1.35737 0.83630 0.76836 0.74842 0.75528 1.21406 1.21453 1.21378 1.19699 0.93402 0.94431 0.95881 1.21483 1.00280 0.97542 1.00389 0.91786 0.92232 0.91095 0.86476 0.85720 0.93394 0.95236 0.92443 0.92042 0.95880 0.93543 0.90019 0.92723 0.92857 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.60 36.01 0.35 -1.11 16 2 C -0.10 -1.75 5.87 -104.68 -0.61 -2.36 16 3 C -0.09 -1.61 9.41 -39.17 -0.37 -1.98 16 4 C -0.05 -0.92 5.73 -106.93 -0.61 -1.53 16 5 C 0.27 5.20 15.33 -22.47 -0.34 4.86 16 6 N -0.45 -8.98 18.54 41.84 0.78 -8.20 16 7 C -0.08 -1.64 7.02 -39.17 -0.27 -1.92 16 8 C -0.02 -0.45 3.44 -104.68 -0.36 -0.81 16 9 C 0.08 1.69 0.49 -156.81 -0.08 1.62 16 10 C -0.13 -2.48 8.13 37.15 0.30 -2.18 16 11 C -0.14 -3.09 6.83 37.16 0.25 -2.84 16 12 C -0.59 -14.08 5.45 -34.44 -0.19 -14.27 16 13 H 0.06 1.41 7.14 -52.49 -0.37 1.03 16 14 C 0.03 0.78 5.12 -17.82 -0.09 0.69 16 15 N -0.90 -24.70 12.77 55.43 0.71 -24.00 16 16 Si 1.06 23.40 29.91 -169.99 -5.08 18.31 16 17 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.03 -0.64 5.67 -104.53 -0.59 -1.23 16 21 C -0.14 -2.48 7.50 36.01 0.27 -2.21 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 24 H 0.07 0.93 6.02 -51.93 -0.31 0.62 16 25 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 26 H 0.12 2.54 5.88 -52.49 -0.31 2.23 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 1.00 4.76 -51.93 -0.25 0.76 16 30 H 0.06 1.44 5.10 -51.93 -0.26 1.17 16 31 H 0.02 0.43 7.72 -51.93 -0.40 0.03 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.28 7.44 2.86 -40.82 -0.12 7.32 16 34 H 0.05 0.84 7.33 -51.93 -0.38 0.45 16 35 H 0.05 0.85 6.18 -51.93 -0.32 0.53 16 36 H 0.12 2.44 3.63 -51.93 -0.19 2.25 16 LS Contribution 283.47 15.07 4.27 4.27 Total: -1.00 -27.12 283.47 -5.93 -33.05 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.25 Total: 1.85 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -2.35 Total: -25.28 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 1.48 Total: -32.20 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.08 Total: 18.31 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.12 -5.93 -33.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194943.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.962 kcal (2) G-P(sol) polarization free energy of solvation -27.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds