Wall clock time and date at job start Mon Mar 30 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37964 * 119.92459 * 2 1 4 4 C 1.39617 * 119.84372 * 179.97438 * 3 2 1 5 5 C 1.43200 * 120.14879 * 179.97438 * 4 3 2 6 6 N 4.80119 * 134.70178 * 0.02562 * 2 1 3 7 7 C 1.39649 * 119.70038 * 359.75840 * 4 3 2 8 8 C 1.37926 * 119.84609 * 0.51726 * 7 4 3 9 9 C 1.50700 * 119.92353 * 179.75262 * 8 7 4 10 10 C 1.52994 * 109.47210 * 118.39134 * 9 8 7 11 11 C 1.53003 * 109.47019 * 358.38728 * 9 8 7 12 12 C 1.50702 * 109.47030 * 238.38997 * 9 8 7 13 13 H 1.07996 * 119.99954 * 240.86260 * 12 9 8 14 14 C 1.37880 * 119.99911 * 60.85872 * 12 9 8 15 15 N 1.31511 * 120.00123 * 351.62034 * 14 12 9 16 16 Si 1.86801 * 119.99656 * 171.34830 * 14 12 9 17 17 H 1.48505 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47522 * 120.00140 * 16 14 12 19 19 H 1.48501 * 109.47009 * 239.99984 * 16 14 12 20 20 C 1.38342 * 119.92489 * 180.02562 * 2 1 3 21 21 C 1.50703 * 119.84504 * 0.02562 * 20 2 1 22 22 H 1.08994 * 109.47513 * 269.97630 * 1 2 3 23 23 H 1.09000 * 109.47133 * 29.97744 * 1 2 3 24 24 H 1.09005 * 109.47284 * 149.97136 * 1 2 3 25 25 H 1.07999 * 120.07676 * 0.02848 * 3 2 1 26 26 H 1.08002 * 120.07443 * 180.27247 * 7 4 3 27 27 H 1.08996 * 109.47315 * 175.97950 * 10 9 8 28 28 H 1.09007 * 109.46979 * 295.97883 * 10 9 8 29 29 H 1.09006 * 109.47232 * 55.97276 * 10 9 8 30 30 H 1.08994 * 109.47093 * 304.73945 * 11 9 8 31 31 H 1.08998 * 109.46887 * 64.74332 * 11 9 8 32 32 H 1.08998 * 109.46589 * 184.73932 * 11 9 8 33 33 H 0.96999 * 119.99982 * 3.31277 * 15 14 12 34 34 H 1.08995 * 109.47371 * 275.80041 * 21 20 2 35 35 H 1.09000 * 109.47290 * 35.80048 * 21 20 2 36 36 H 1.09004 * 109.47051 * 155.80329 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1957 0.0000 4 6 3.5914 1.1937 0.0005 5 6 4.3124 2.4310 0.0000 6 7 4.8842 3.4126 0.0015 7 6 4.2816 -0.0203 0.0062 8 6 3.5809 -1.2083 0.0004 9 6 4.3240 -2.5193 0.0008 10 6 3.9731 -3.3040 1.2665 11 6 5.8301 -2.2519 -0.0324 12 6 3.9293 -3.3209 -1.2128 13 1 3.4610 -4.2866 -1.0931 14 6 4.1659 -2.8211 -2.4758 15 7 4.5819 -1.5826 -2.6257 16 14 3.9029 -3.9058 -3.9737 17 1 3.4425 -5.2487 -3.5378 18 1 2.8773 -3.2925 -4.8553 19 1 5.1805 -4.0389 -4.7190 20 6 2.1971 -1.1990 -0.0005 21 6 1.4384 -2.5011 -0.0017 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5143 25 1 1.6553 2.1310 0.0005 26 1 5.3616 -0.0288 0.0111 27 1 4.4540 -4.2816 1.2330 28 1 4.3229 -2.7568 2.1420 29 1 2.8923 -3.4326 1.3264 30 1 6.0684 -1.6217 -0.8891 31 1 6.1295 -1.7459 0.8854 32 1 6.3652 -3.1977 -0.1170 33 1 4.7683 -1.0359 -1.8464 34 1 1.1653 -2.7634 1.0204 35 1 0.5355 -2.3950 -0.6031 36 1 2.0656 -3.2867 -0.4232 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260194943.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:31 Heat of formation + Delta-G solvation = 30.086621 kcal Electronic energy + Delta-G solvation = -17854.658783 eV Core-core repulsion = 15303.020958 eV Total energy + Delta-G solvation = -2551.637825 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22750 -38.10321 -37.15118 -34.36216 -33.38340 -31.46158 -29.44963 -27.62018 -27.06370 -26.47964 -23.43064 -22.99869 -20.64782 -19.17992 -18.28460 -16.90514 -16.33875 -15.61778 -15.42998 -15.29361 -14.71287 -14.63601 -14.52516 -14.40138 -13.93571 -13.76982 -13.49039 -13.21417 -12.79507 -12.65687 -12.58362 -12.50018 -12.44913 -12.20987 -12.10876 -11.94393 -11.84692 -11.38834 -11.21636 -10.47229 -10.30770 -9.40621 -9.19498 -8.18830 -6.05838 -0.02765 0.62826 1.56446 1.61722 1.66691 1.81443 1.99022 2.67688 2.90588 3.04253 3.38466 4.00300 4.07677 4.22533 4.44182 4.50175 4.60196 4.62822 4.68296 4.83839 4.90644 4.95787 5.01911 5.06603 5.12413 5.15168 5.22528 5.29853 5.37294 5.45849 5.53321 5.64065 5.73035 5.80992 6.08504 6.22417 6.31693 6.41549 6.48541 6.91614 7.68653 9.08139 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.009888 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.904657 B = 2831.067204 C = 3134.723774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C -0.088 4.088 4 C -0.057 4.057 5 C 0.285 3.715 6 N -0.470 5.470 7 C -0.098 4.098 8 C -0.041 4.041 9 C 0.069 3.931 10 C -0.128 4.128 11 C -0.138 4.138 12 C -0.577 4.577 13 H 0.056 0.944 14 C -0.013 4.013 15 N -0.944 5.944 16 Si 1.095 2.905 17 H -0.268 1.268 18 H -0.291 1.291 19 H -0.294 1.294 20 C -0.049 4.049 21 C -0.138 4.138 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.147 0.853 26 H 0.112 0.888 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.283 0.717 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 -1.404 6.392 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.108 4.108 4 C -0.060 4.060 5 C -0.028 4.028 6 N -0.146 5.146 7 C -0.118 4.118 8 C -0.041 4.041 9 C 0.068 3.932 10 C -0.185 4.185 11 C -0.196 4.196 12 C -0.615 4.615 13 H 0.074 0.926 14 C -0.214 4.214 15 N -0.584 5.584 16 Si 0.922 3.078 17 H -0.193 1.193 18 H -0.218 1.218 19 H -0.221 1.221 20 C -0.050 4.050 21 C -0.193 4.193 22 H 0.106 0.894 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.165 0.835 26 H 0.130 0.870 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.446 0.110 4.758 8.837 hybrid contribution 0.490 -0.081 1.236 1.332 sum -6.956 0.029 5.995 9.183 Atomic orbital electron populations 1.20843 0.88448 1.03609 1.03445 1.20002 0.97865 0.91496 1.00689 1.21035 0.90839 0.99122 0.99846 1.15985 0.93153 0.85891 1.11013 1.25958 0.92377 0.92573 0.91917 1.81136 1.09620 1.12226 1.11638 1.21108 0.99572 0.91293 0.99872 1.20333 0.94176 0.95223 0.94399 1.17503 0.90719 0.89703 0.95262 1.21883 1.02194 0.98982 0.95433 1.21982 0.98721 0.99977 0.98912 1.21897 1.43170 1.04916 0.91476 0.92561 1.26521 0.94266 0.97484 1.03160 1.70779 1.43592 1.07832 1.36170 0.83196 0.76295 0.74757 0.73587 1.19304 1.21753 1.22087 1.20028 0.93008 0.96115 0.95852 1.21415 1.00120 0.95796 1.01965 0.89436 0.90536 0.90771 0.83487 0.86968 0.93398 0.94087 0.91260 0.94612 0.94131 0.94107 0.90110 0.90331 0.91291 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 9.60 71.24 0.68 -1.73 16 2 C -0.10 -3.17 5.87 -19.90 -0.12 -3.28 16 3 C -0.09 -2.81 9.41 22.54 0.21 -2.59 16 4 C -0.06 -2.10 5.73 -21.36 -0.12 -2.22 16 5 C 0.29 10.69 15.33 88.33 1.35 12.04 16 6 N -0.47 -18.45 18.54 19.00 0.35 -18.10 16 7 C -0.10 -4.02 7.02 22.54 0.16 -3.86 16 8 C -0.04 -1.68 3.44 -19.90 -0.07 -1.75 16 9 C 0.07 2.93 0.49 -53.67 -0.03 2.90 16 10 C -0.13 -4.59 8.13 71.98 0.59 -4.01 16 11 C -0.14 -6.00 6.83 71.98 0.49 -5.51 16 12 C -0.58 -27.48 5.45 25.60 0.14 -27.34 16 13 H 0.06 2.65 7.14 -2.91 -0.02 2.63 16 14 C -0.01 -0.64 5.12 84.66 0.43 -0.21 16 15 N -0.94 -52.59 12.77 21.45 0.27 -52.32 16 16 Si 1.10 47.23 29.91 68.60 2.05 49.29 16 17 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 18 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 20 C -0.05 -1.80 5.67 -19.80 -0.11 -1.91 16 21 C -0.14 -4.47 7.50 71.24 0.53 -3.94 16 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.08 1.48 8.08 -2.39 -0.02 1.47 16 24 H 0.07 1.64 6.02 -2.38 -0.01 1.63 16 25 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 26 H 0.11 4.75 5.88 -2.91 -0.02 4.73 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.07 2.28 4.76 -2.38 -0.01 2.27 16 30 H 0.03 1.72 5.10 -2.39 -0.01 1.71 16 31 H 0.04 1.55 7.72 -2.39 -0.02 1.54 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.28 15.23 2.86 -92.71 -0.27 14.97 16 34 H 0.08 2.14 7.33 -2.39 -0.02 2.12 16 35 H 0.07 2.00 6.18 -2.39 -0.01 1.98 16 36 H 0.10 3.73 3.63 -2.39 -0.01 3.72 16 Total: -1.00 -58.05 283.47 8.42 -49.63 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.60 Total: 14.92 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 4.15 Total: -43.42 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: 0.63 Total: -70.42 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.05 Total: 49.29 kcal Total: -58.05 8.42 -49.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194943.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.714 kcal (2) G-P(sol) polarization free energy of solvation -58.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds