Wall clock time and date at job start Mon Mar 30 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00401 * 2 1 4 4 H 1.48505 * 109.47335 * 269.99924 * 3 2 1 5 5 H 1.48495 * 109.47144 * 29.99898 * 3 2 1 6 6 H 1.48504 * 109.47352 * 150.00029 * 3 2 1 7 7 C 1.37882 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99649 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.50706 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.38287 * 119.92303 * 90.00546 * 10 9 7 12 12 C 1.38101 * 120.07428 * 180.02562 * 11 10 9 13 13 C 1.38911 * 119.92358 * 0.02562 * 12 11 10 14 14 N 1.39683 * 120.07360 * 179.97438 * 13 12 11 15 15 C 1.48558 * 110.99991 * 233.71286 * 14 13 12 16 16 C 1.54370 * 104.70122 * 200.90154 * 15 14 13 17 17 H 1.09000 * 117.60515 * 244.77851 * 16 15 14 18 18 C 1.57164 * 118.11869 * 86.11208 * 16 15 14 19 19 C 1.52995 * 59.76255 * 269.01098 * 18 16 15 20 20 H 1.09001 * 119.52696 * 247.63384 * 19 18 16 21 21 C 1.48565 * 110.99782 * 118.29591 * 14 13 12 22 22 C 1.38912 * 119.85368 * 0.25098 * 13 12 11 23 23 C 1.38108 * 119.91982 * 359.49516 * 22 13 12 24 24 H 0.97000 * 119.99593 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.46861 * 60.00386 * 9 7 2 26 26 H 1.08999 * 109.46998 * 300.00216 * 9 7 2 27 27 H 1.08008 * 119.96293 * 359.97438 * 11 10 9 28 28 H 1.08001 * 120.03849 * 180.02562 * 12 11 10 29 29 H 1.09001 * 110.40963 * 319.74218 * 15 14 13 30 30 H 1.08992 * 110.41101 * 82.05923 * 15 14 13 31 31 H 1.09006 * 116.91490 * 161.40947 * 18 16 15 32 32 H 1.09003 * 118.44811 * 15.92968 * 18 16 15 33 33 H 1.08998 * 110.40742 * 277.81705 * 21 14 13 34 34 H 1.08991 * 110.41290 * 40.25866 * 21 14 13 35 35 H 1.08002 * 120.04207 * 179.73109 * 22 13 12 36 36 H 1.08000 * 119.96259 * 180.25186 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6151 0.0001 11 6 4.2433 -3.2657 -1.1984 12 6 4.7030 -4.5679 -1.2019 13 6 4.9343 -5.2244 0.0002 14 7 5.3988 -6.5417 0.0003 15 6 4.5214 -7.4155 0.8210 16 6 5.4004 -8.6353 1.1712 17 1 5.1013 -9.6046 0.7722 18 6 6.3270 -8.5416 2.4372 19 6 6.8543 -8.1218 1.0637 20 1 7.6370 -8.7110 0.5857 21 6 6.7275 -6.6377 0.6579 22 6 4.6973 -4.5698 1.2023 23 6 4.2425 -3.2658 1.1986 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6798 0.8894 26 1 3.8745 -0.6809 -0.8905 27 1 4.0620 -2.7551 -2.1327 28 1 4.8825 -5.0754 -2.1383 29 1 4.2109 -6.8977 1.7285 30 1 3.6501 -7.7275 0.2454 31 1 6.6941 -9.4811 2.8506 32 1 6.1346 -7.7526 3.1642 33 1 7.5182 -6.3658 -0.0413 34 1 6.7623 -5.9982 1.5398 35 1 4.8719 -5.0788 2.1387 36 1 4.0619 -2.7548 2.1328 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260197472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:09 Heat of formation + Delta-G solvation = 65.154627 kcal Electronic energy + Delta-G solvation = -16650.443132 eV Core-core repulsion = 14100.325970 eV Total energy + Delta-G solvation = -2550.117162 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37432 -38.22423 -34.65572 -32.82605 -30.70220 -30.35651 -28.51476 -27.24741 -24.48805 -22.32583 -22.15903 -20.87602 -20.21753 -19.78407 -16.91491 -16.79037 -16.14233 -14.95989 -14.79788 -14.16660 -14.14256 -13.79031 -13.15908 -12.97121 -12.83179 -12.71422 -12.45008 -11.98429 -11.71166 -11.57744 -11.41730 -11.16697 -10.80915 -10.38981 -10.32474 -10.14835 -10.02730 -9.94554 -9.39295 -8.60388 -8.48595 -8.38679 -7.74402 -6.09297 -4.08678 1.83431 1.97089 3.27170 3.35041 3.36831 3.37605 3.96022 4.30821 4.35160 4.39671 4.55675 4.80974 5.01734 5.09172 5.22053 5.34788 5.43495 5.44161 5.50401 5.56898 5.78383 5.82647 5.83472 5.96431 5.98290 6.07555 6.11554 6.27344 6.52247 6.66430 6.89536 6.91825 6.98099 7.01485 7.31068 7.55919 7.65565 7.77169 8.47455 8.95975 9.50762 11.03670 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.051500 B = 0.004521 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.555995 B = 6191.491339 C = 6260.001644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.027 4.027 11 C -0.118 4.118 12 C -0.091 4.091 13 C 0.040 3.960 14 N -0.470 5.470 15 C 0.062 3.938 16 C -0.166 4.166 17 H 0.119 0.881 18 C -0.152 4.152 19 C -0.162 4.162 20 H 0.114 0.886 21 C 0.063 3.937 22 C -0.148 4.148 23 C -0.113 4.113 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.372 -14.119 2.570 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.024 4.024 10 C -0.027 4.027 11 C -0.136 4.136 12 C -0.110 4.110 13 C -0.053 4.053 14 N -0.191 5.191 15 C -0.065 4.065 16 C -0.185 4.185 17 H 0.137 0.863 18 C -0.190 4.190 19 C -0.180 4.180 20 H 0.132 0.868 21 C -0.063 4.063 22 C -0.168 4.168 23 C -0.132 4.132 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.225 -14.160 1.984 19.477 hybrid contribution 0.194 1.114 0.803 1.387 sum 13.419 -13.046 2.787 18.921 Atomic orbital electron populations 1.69901 1.06270 1.27000 1.50619 1.25000 0.94739 0.99028 0.94460 0.86801 0.80377 0.83638 0.78677 1.20109 1.21229 1.18950 1.20926 0.88203 0.94689 1.51348 0.90826 1.18830 0.97504 0.88667 0.97395 1.20343 0.92228 0.97961 0.92171 1.21044 0.99941 0.94301 0.98356 1.20846 0.99230 0.94249 0.96673 1.18714 1.03586 0.89788 0.93228 1.63178 1.01645 1.06098 1.48167 1.22725 0.95755 0.91692 0.96288 1.24133 0.92462 0.99453 1.02449 0.86282 1.23724 1.02104 1.02772 0.90370 1.23473 0.97901 0.96598 1.00072 0.86778 1.22732 0.92213 0.93656 0.97719 1.21405 1.02344 0.95857 0.97201 1.20919 0.99849 0.94096 0.98325 0.92573 0.95415 0.95751 0.85931 0.86222 0.92903 0.89461 0.88070 0.88911 0.89656 0.93147 0.87323 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.51 -14.59 9.65 -34.44 -0.33 -14.92 16 8 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 9 C 0.01 0.31 4.17 -29.03 -0.12 0.19 16 10 C -0.03 -0.57 5.07 -104.59 -0.53 -1.10 16 11 C -0.12 -2.25 9.69 -39.61 -0.38 -2.64 16 12 C -0.09 -1.56 9.97 -39.38 -0.39 -1.96 16 13 C 0.04 0.67 4.90 -83.78 -0.41 0.25 16 14 N -0.47 -6.67 5.39 -166.72 -0.90 -7.57 16 15 C 0.06 0.78 6.15 -2.19 -0.01 0.77 16 16 C -0.17 -1.70 7.32 -86.82 -0.64 -2.33 16 17 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 18 C -0.15 -1.35 10.29 -24.47 -0.25 -1.60 16 19 C -0.16 -1.61 6.99 -89.08 -0.62 -2.23 16 20 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 21 C 0.06 0.76 6.16 -2.18 -0.01 0.75 16 22 C -0.15 -2.49 8.06 -39.38 -0.32 -2.81 16 23 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 26 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 27 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 28 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.05 0.70 6.36 -51.93 -0.33 0.37 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.63 6.91 -51.93 -0.36 0.27 16 35 H 0.11 1.61 6.73 -52.49 -0.35 1.25 16 36 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 295.13 15.07 4.45 4.45 Total: -1.00 -30.29 295.13 -10.05 -40.34 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.19 Total: 1.19 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -4.51 Total: -28.27 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: -0.12 Total: -34.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.29 -10.05 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.495 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds