Wall clock time and date at job start Mon Mar 30 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00401 * 2 1 4 4 H 1.48505 * 109.47335 * 269.99924 * 3 2 1 5 5 H 1.48495 * 109.47144 * 29.99898 * 3 2 1 6 6 H 1.48504 * 109.47352 * 150.00029 * 3 2 1 7 7 C 1.37882 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99649 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.50706 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.38287 * 119.92303 * 90.00546 * 10 9 7 12 12 C 1.38101 * 120.07428 * 180.02562 * 11 10 9 13 13 C 1.38911 * 119.92358 * 0.02562 * 12 11 10 14 14 N 1.39683 * 120.07360 * 179.97438 * 13 12 11 15 15 C 1.48558 * 110.99991 * 233.71286 * 14 13 12 16 16 C 1.54370 * 104.70122 * 200.90154 * 15 14 13 17 17 H 1.09000 * 117.60515 * 244.77851 * 16 15 14 18 18 C 1.57164 * 118.11869 * 86.11208 * 16 15 14 19 19 C 1.52995 * 59.76255 * 269.01098 * 18 16 15 20 20 H 1.09001 * 119.52696 * 247.63384 * 19 18 16 21 21 C 1.48565 * 110.99782 * 118.29591 * 14 13 12 22 22 C 1.38912 * 119.85368 * 0.25098 * 13 12 11 23 23 C 1.38108 * 119.91982 * 359.49516 * 22 13 12 24 24 H 0.97000 * 119.99593 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.46861 * 60.00386 * 9 7 2 26 26 H 1.08999 * 109.46998 * 300.00216 * 9 7 2 27 27 H 1.08008 * 119.96293 * 359.97438 * 11 10 9 28 28 H 1.08001 * 120.03849 * 180.02562 * 12 11 10 29 29 H 1.09001 * 110.40963 * 319.74218 * 15 14 13 30 30 H 1.08992 * 110.41101 * 82.05923 * 15 14 13 31 31 H 1.09006 * 116.91490 * 161.40947 * 18 16 15 32 32 H 1.09003 * 118.44811 * 15.92968 * 18 16 15 33 33 H 1.08998 * 110.40742 * 277.81705 * 21 14 13 34 34 H 1.08991 * 110.41290 * 40.25866 * 21 14 13 35 35 H 1.08002 * 120.04207 * 179.73109 * 22 13 12 36 36 H 1.08000 * 119.96259 * 180.25186 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6151 0.0001 11 6 4.2433 -3.2657 -1.1984 12 6 4.7030 -4.5679 -1.2019 13 6 4.9343 -5.2244 0.0002 14 7 5.3988 -6.5417 0.0003 15 6 4.5214 -7.4155 0.8210 16 6 5.4004 -8.6353 1.1712 17 1 5.1013 -9.6046 0.7722 18 6 6.3270 -8.5416 2.4372 19 6 6.8543 -8.1218 1.0637 20 1 7.6370 -8.7110 0.5857 21 6 6.7275 -6.6377 0.6579 22 6 4.6973 -4.5698 1.2023 23 6 4.2425 -3.2658 1.1986 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6798 0.8894 26 1 3.8745 -0.6809 -0.8905 27 1 4.0620 -2.7551 -2.1327 28 1 4.8825 -5.0754 -2.1383 29 1 4.2109 -6.8977 1.7285 30 1 3.6501 -7.7275 0.2454 31 1 6.6941 -9.4811 2.8506 32 1 6.1346 -7.7526 3.1642 33 1 7.5182 -6.3658 -0.0413 34 1 6.7623 -5.9982 1.5398 35 1 4.8719 -5.0788 2.1387 36 1 4.0619 -2.7548 2.1328 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260197472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:09 Heat of formation + Delta-G solvation = 48.100713 kcal Electronic energy + Delta-G solvation = -16651.182645 eV Core-core repulsion = 14100.325970 eV Total energy + Delta-G solvation = -2550.856676 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46913 -39.49346 -36.00513 -34.71510 -32.37649 -31.81012 -29.44906 -28.85521 -25.83830 -23.83250 -23.64848 -21.92000 -21.16785 -21.04732 -18.98570 -18.05588 -17.19140 -16.54287 -16.21791 -15.88060 -15.22274 -15.08586 -14.57764 -14.31765 -14.22968 -14.00549 -13.77625 -13.51472 -13.39387 -12.85226 -12.50758 -12.41272 -12.24406 -11.99464 -11.85714 -11.76219 -11.55050 -11.07888 -10.87044 -10.80146 -9.81741 -9.59366 -9.24688 -8.31285 -6.36882 0.39941 0.52696 1.36313 1.37907 1.49922 2.34481 2.57258 2.88944 2.90418 3.03071 3.50844 3.73034 3.97706 4.01311 4.08301 4.16350 4.24133 4.30292 4.48080 4.52417 4.60205 4.70686 4.83749 4.85576 4.88195 4.99175 5.00128 5.06235 5.19844 5.26251 5.29488 5.47083 5.50990 5.55920 5.64564 5.91242 5.95058 6.23849 6.45037 6.69444 7.26754 8.85410 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.051500 B = 0.004521 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.555995 B = 6191.491339 C = 6260.001644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.522 4.522 8 H 0.026 0.974 9 C 0.020 3.980 10 C -0.062 4.062 11 C -0.125 4.125 12 C -0.094 4.094 13 C 0.053 3.947 14 N -0.478 5.478 15 C 0.056 3.944 16 C -0.172 4.172 17 H 0.134 0.866 18 C -0.138 4.138 19 C -0.160 4.160 20 H 0.132 0.868 21 C 0.058 3.942 22 C -0.144 4.144 23 C -0.123 4.123 24 H 0.268 0.732 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.125 0.875 28 H 0.139 0.861 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.130 0.870 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.778 -15.142 2.969 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.560 4.560 8 H 0.044 0.956 9 C -0.017 4.017 10 C -0.062 4.062 11 C -0.143 4.143 12 C -0.113 4.113 13 C -0.041 4.041 14 N -0.200 5.200 15 C -0.070 4.070 16 C -0.191 4.191 17 H 0.151 0.849 18 C -0.175 4.175 19 C -0.179 4.179 20 H 0.149 0.851 21 C -0.067 4.067 22 C -0.164 4.164 23 C -0.142 4.142 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.143 0.857 28 H 0.157 0.843 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.148 0.852 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.651 -15.205 2.385 21.950 hybrid contribution -0.577 1.255 0.684 1.541 sum 15.074 -13.949 3.069 20.766 Atomic orbital electron populations 1.70061 1.08360 1.28330 1.52216 1.25997 0.95609 1.03436 0.93864 0.85631 0.79472 0.77981 0.79441 1.18864 1.20797 1.16905 1.21154 0.90808 0.92987 1.51002 0.95573 1.18669 0.94285 0.91061 0.97677 1.20235 0.95022 0.97192 0.93753 1.21131 1.00139 0.95232 0.97847 1.21049 0.98690 0.93552 0.97963 1.18930 1.01652 0.90762 0.92774 1.63253 1.02887 1.04619 1.49220 1.22767 0.96043 0.92590 0.95644 1.24137 0.91939 0.98860 1.04142 0.84857 1.23839 1.00345 1.03677 0.89606 1.23511 0.98083 0.95055 1.01253 0.85053 1.22804 0.90947 0.95444 0.97551 1.21578 1.01430 0.94916 0.98479 1.21008 1.00268 0.95165 0.97756 0.92307 0.95026 0.94974 0.85690 0.84280 0.93630 0.90045 0.85657 0.89231 0.89272 0.93523 0.85203 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 2 C 0.01 0.47 5.47 84.66 0.46 0.93 16 3 Si 0.95 43.97 27.47 68.60 1.88 45.86 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 7 C -0.52 -30.63 9.65 25.60 0.25 -30.39 16 8 H 0.03 1.72 7.98 -2.91 -0.02 1.70 16 9 C 0.02 0.98 4.17 29.10 0.12 1.10 16 10 C -0.06 -2.65 5.07 -19.84 -0.10 -2.75 16 11 C -0.12 -4.80 9.69 22.25 0.22 -4.58 16 12 C -0.09 -3.14 9.97 22.40 0.22 -2.92 16 13 C 0.05 1.67 4.90 38.21 0.19 1.86 16 14 N -0.48 -12.72 5.39 -681.37 -3.67 -16.39 16 15 C 0.06 1.33 6.15 86.45 0.53 1.86 16 16 C -0.17 -3.03 7.32 -8.33 -0.06 -3.10 16 17 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 18 C -0.14 -1.95 10.29 32.06 0.33 -1.62 16 19 C -0.16 -2.67 6.99 -9.79 -0.07 -2.74 16 20 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 21 C 0.06 1.27 6.16 86.45 0.53 1.80 16 22 C -0.14 -4.72 8.06 22.40 0.18 -4.54 16 23 C -0.12 -4.75 9.69 22.25 0.22 -4.53 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.03 1.48 7.14 -2.39 -0.02 1.46 16 26 H 0.03 1.48 7.51 -2.39 -0.02 1.46 16 27 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 28 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.05 1.14 6.36 -2.39 -0.02 1.13 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.06 6.91 -2.39 -0.02 1.04 16 35 H 0.13 3.64 6.73 -2.91 -0.02 3.62 16 36 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -66.75 295.13 2.53 -64.22 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.00 Total: 15.59 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 3.02 Total: -49.62 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -3.37 Total: -76.05 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -66.75 2.53 -64.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.321 kcal (2) G-P(sol) polarization free energy of solvation -66.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds