Wall clock time and date at job start Mon Mar 30 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.46878 * 2 1 4 4 C 1.36668 * 120.11547 * 265.74154 * 3 2 1 5 5 C 1.38790 * 120.52943 * 179.97438 * 4 3 2 6 6 C 1.37795 * 120.66243 * 359.57985 * 5 4 3 7 7 C 1.39079 * 119.78103 * 359.97438 * 6 5 4 8 8 C 1.39594 * 120.11995 * 85.00133 * 3 2 1 9 9 C 1.46490 * 134.03442 * 359.97438 * 8 3 2 10 10 C 1.50701 * 126.49931 * 0.02562 * 9 8 3 11 11 C 1.50700 * 109.46989 * 85.02644 * 10 9 8 12 12 H 1.08000 * 120.00027 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99695 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00358 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99874 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47327 * 59.99615 * 15 13 11 17 17 H 1.48502 * 109.47186 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46822 * 299.99370 * 15 13 11 19 19 C 1.34237 * 106.99700 * 180.02562 * 9 8 3 20 20 N 1.36833 * 109.94000 * 0.02562 * 19 9 8 21 21 C 1.46499 * 125.06296 * 180.02562 * 20 19 9 22 22 H 1.09001 * 109.47570 * 300.00061 * 1 2 3 23 23 H 1.08998 * 109.47423 * 60.00360 * 1 2 3 24 24 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47058 * 239.99996 * 2 1 3 26 26 H 1.08998 * 109.47423 * 119.99640 * 2 1 3 27 27 H 1.07996 * 119.73740 * 359.47682 * 4 3 2 28 28 H 1.08004 * 119.67172 * 179.59851 * 5 4 3 29 29 H 1.08001 * 120.10818 * 180.02562 * 6 5 4 30 30 H 1.09005 * 109.46781 * 205.02347 * 10 9 8 31 31 H 1.08997 * 109.47078 * 325.02004 * 10 9 8 32 32 H 0.97000 * 119.99876 * 180.02562 * 14 13 11 33 33 H 1.08001 * 125.02970 * 179.97438 * 19 9 8 34 34 H 1.09002 * 109.47391 * 90.01941 * 21 20 19 35 35 H 1.09001 * 109.46813 * 330.01997 * 21 20 19 36 36 H 1.09004 * 109.47041 * 210.02124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3435 2.0381 -1.1789 5 6 2.8063 3.3465 -1.1890 6 6 2.9521 4.0494 -0.0128 7 6 2.6324 3.4440 1.1979 8 6 2.1665 2.1163 1.2029 9 6 1.9170 1.7803 2.6067 10 6 1.4032 0.4663 3.1362 11 6 2.5564 -0.4860 3.3217 12 1 3.5609 -0.1712 3.0799 13 6 2.3290 -1.7593 3.7991 14 7 1.1058 -2.1427 4.0931 15 14 3.7586 -2.9394 4.0297 16 1 4.7267 -2.3614 4.9962 17 1 3.2523 -4.2343 4.5514 18 1 4.4332 -3.1605 2.7254 19 6 2.2328 2.8649 3.3319 20 7 2.6636 3.8683 2.5074 21 6 3.0922 5.1969 2.9516 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2362 1.5008 -2.1096 28 1 3.0544 3.8187 -2.1281 29 1 3.3125 5.0673 -0.0310 30 1 0.9086 0.6289 4.0939 31 1 0.6920 0.0421 2.4275 32 1 0.9460 -3.0385 4.4293 33 1 2.1571 2.9353 4.4070 34 1 4.1639 5.1853 3.1506 35 1 2.5565 5.4659 3.8620 36 1 2.8752 5.9280 2.1728 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260206984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:46 Heat of formation + Delta-G solvation = 42.755574 kcal Electronic energy + Delta-G solvation = -17382.044843 eV Core-core repulsion = 14830.956385 eV Total energy + Delta-G solvation = -2551.088458 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71001 -36.89005 -34.28079 -32.69754 -31.81656 -29.13820 -28.70324 -27.49408 -25.17492 -23.10732 -22.64661 -21.10454 -20.52386 -18.10731 -16.26469 -15.95567 -15.79018 -14.93609 -14.78817 -14.39750 -14.02967 -13.58076 -12.81865 -12.73279 -12.50774 -12.21546 -12.10245 -11.85181 -11.69288 -11.42164 -11.12335 -10.93592 -10.68635 -10.52542 -10.40396 -10.14510 -9.72413 -9.56773 -9.35810 -8.52669 -8.31830 -7.54015 -6.72964 -5.93715 -3.97090 1.73951 2.21012 3.36283 3.38020 3.40343 3.42684 3.55366 4.45799 4.56285 5.01497 5.20180 5.36465 5.37716 5.42044 5.53171 5.56456 5.63167 5.83923 5.92103 6.14614 6.17308 6.20767 6.31556 6.46563 6.61564 6.68159 6.83572 6.91014 6.99768 7.08143 7.35481 7.45976 7.59529 7.66600 7.80818 7.97949 8.03028 8.09042 8.48029 9.08169 9.65449 11.13847 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.008318 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.680487 B = 3365.296613 C = 4028.947474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C -0.006 4.006 4 C -0.171 4.171 5 C -0.102 4.102 6 C -0.151 4.151 7 C 0.096 3.904 8 C -0.099 4.099 9 C -0.102 4.102 10 C 0.074 3.926 11 C -0.503 4.503 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.003 3.997 20 N -0.497 5.497 21 C 0.087 3.913 22 H 0.060 0.940 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.022 0.978 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.159 0.841 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 11.165 -6.296 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.007 4.007 4 C -0.190 4.190 5 C -0.121 4.121 6 C -0.172 4.172 7 C -0.010 4.010 8 C -0.105 4.105 9 C -0.108 4.108 10 C 0.037 3.963 11 C -0.541 4.541 12 H 0.072 0.928 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.117 4.117 20 N -0.182 5.182 21 C -0.055 4.055 22 H 0.079 0.921 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.177 0.823 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.499 11.314 -6.047 12.916 hybrid contribution 0.961 -0.482 0.250 1.104 sum 2.461 10.831 -5.797 12.529 Atomic orbital electron populations 1.21655 0.95191 1.01305 1.01135 1.20773 0.95997 0.92731 1.04282 1.19186 0.94981 0.95563 0.90946 1.20397 1.06072 0.95483 0.97093 1.20590 1.00443 0.94688 0.96359 1.19775 1.07927 0.99481 0.89982 1.18253 1.03152 0.94759 0.84855 1.19118 1.04836 0.92725 0.93784 1.21231 1.02847 0.96886 0.89847 1.17895 0.96179 0.86276 0.95977 1.21053 0.93572 0.96762 1.42721 0.92839 1.24968 0.95423 0.98082 0.95723 1.69943 1.19361 1.19125 1.44943 0.86720 0.82856 0.80269 0.78571 1.20406 1.21353 1.20209 1.21520 1.06396 0.88095 0.95713 1.43622 1.58209 1.12062 1.04326 1.21735 1.00181 0.82750 1.00840 0.92071 0.94082 0.92746 0.92505 0.87084 0.86928 0.86803 0.87518 0.96016 0.94140 0.92969 0.82341 0.92216 0.90548 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.33 37.16 0.35 -2.12 16 2 C -0.10 -1.98 5.43 -27.89 -0.15 -2.13 16 3 C -0.01 -0.12 5.13 -104.68 -0.54 -0.66 16 4 C -0.17 -2.91 9.60 -39.94 -0.38 -3.29 16 5 C -0.10 -1.58 10.01 -39.54 -0.40 -1.97 16 6 C -0.15 -2.45 9.96 -39.43 -0.39 -2.84 16 7 C 0.10 1.83 6.81 -83.99 -0.57 1.26 16 8 C -0.10 -2.12 6.15 -105.14 -0.65 -2.77 16 9 C -0.10 -2.31 5.50 -102.71 -0.57 -2.87 16 10 C 0.07 1.89 4.60 -29.03 -0.13 1.76 16 11 C -0.50 -13.92 7.92 -34.44 -0.27 -14.19 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 15 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.00 0.07 11.20 -16.73 -0.19 -0.12 16 20 N -0.50 -8.67 3.18 -121.80 -0.39 -9.05 16 21 C 0.09 1.05 11.03 59.85 0.66 1.71 16 22 H 0.06 1.21 6.81 -51.93 -0.35 0.86 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 26 H 0.11 2.59 5.36 -51.93 -0.28 2.31 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 1.06 4.86 -51.93 -0.25 0.81 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.16 2.77 8.06 -52.49 -0.42 2.35 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 297.62 15.07 4.49 4.49 Total: -1.00 -30.55 297.62 -8.58 -39.13 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.07 Total: 0.82 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -3.33 Total: -26.70 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.35 Total: -34.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.55 -8.58 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.886 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds