Wall clock time and date at job start Mon Mar 30 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.46878 * 2 1 4 4 C 1.36668 * 120.11547 * 265.74154 * 3 2 1 5 5 C 1.38790 * 120.52943 * 179.97438 * 4 3 2 6 6 C 1.37795 * 120.66243 * 359.57985 * 5 4 3 7 7 C 1.39079 * 119.78103 * 359.97438 * 6 5 4 8 8 C 1.39594 * 120.11995 * 85.00133 * 3 2 1 9 9 C 1.46490 * 134.03442 * 359.97438 * 8 3 2 10 10 C 1.50701 * 126.49931 * 0.02562 * 9 8 3 11 11 C 1.50700 * 109.46989 * 85.02644 * 10 9 8 12 12 H 1.08000 * 120.00027 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99695 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00358 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99874 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47327 * 59.99615 * 15 13 11 17 17 H 1.48502 * 109.47186 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46822 * 299.99370 * 15 13 11 19 19 C 1.34237 * 106.99700 * 180.02562 * 9 8 3 20 20 N 1.36833 * 109.94000 * 0.02562 * 19 9 8 21 21 C 1.46499 * 125.06296 * 180.02562 * 20 19 9 22 22 H 1.09001 * 109.47570 * 300.00061 * 1 2 3 23 23 H 1.08998 * 109.47423 * 60.00360 * 1 2 3 24 24 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47058 * 239.99996 * 2 1 3 26 26 H 1.08998 * 109.47423 * 119.99640 * 2 1 3 27 27 H 1.07996 * 119.73740 * 359.47682 * 4 3 2 28 28 H 1.08004 * 119.67172 * 179.59851 * 5 4 3 29 29 H 1.08001 * 120.10818 * 180.02562 * 6 5 4 30 30 H 1.09005 * 109.46781 * 205.02347 * 10 9 8 31 31 H 1.08997 * 109.47078 * 325.02004 * 10 9 8 32 32 H 0.97000 * 119.99876 * 180.02562 * 14 13 11 33 33 H 1.08001 * 125.02970 * 179.97438 * 19 9 8 34 34 H 1.09002 * 109.47391 * 90.01941 * 21 20 19 35 35 H 1.09001 * 109.46813 * 330.01997 * 21 20 19 36 36 H 1.09004 * 109.47041 * 210.02124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3435 2.0381 -1.1789 5 6 2.8063 3.3465 -1.1890 6 6 2.9521 4.0494 -0.0128 7 6 2.6324 3.4440 1.1979 8 6 2.1665 2.1163 1.2029 9 6 1.9170 1.7803 2.6067 10 6 1.4032 0.4663 3.1362 11 6 2.5564 -0.4860 3.3217 12 1 3.5609 -0.1712 3.0799 13 6 2.3290 -1.7593 3.7991 14 7 1.1058 -2.1427 4.0931 15 14 3.7586 -2.9394 4.0297 16 1 4.7267 -2.3614 4.9962 17 1 3.2523 -4.2343 4.5514 18 1 4.4332 -3.1605 2.7254 19 6 2.2328 2.8649 3.3319 20 7 2.6636 3.8683 2.5074 21 6 3.0922 5.1969 2.9516 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2362 1.5008 -2.1096 28 1 3.0544 3.8187 -2.1281 29 1 3.3125 5.0673 -0.0310 30 1 0.9086 0.6289 4.0939 31 1 0.6920 0.0421 2.4275 32 1 0.9460 -3.0385 4.4293 33 1 2.1571 2.9353 4.4070 34 1 4.1639 5.1853 3.1506 35 1 2.5565 5.4659 3.8620 36 1 2.8752 5.9280 2.1728 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260206984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:46 Heat of formation + Delta-G solvation = 27.218649 kcal Electronic energy + Delta-G solvation = -17382.718575 eV Core-core repulsion = 14830.956385 eV Total energy + Delta-G solvation = -2551.762190 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.10387 -38.23369 -35.98434 -34.48338 -33.32936 -30.71316 -30.18283 -28.94613 -26.73444 -24.54776 -24.49606 -22.47030 -21.97746 -19.59620 -18.37396 -17.42236 -17.13480 -16.42839 -16.21789 -16.02600 -15.45439 -14.95637 -14.36298 -14.19330 -14.09588 -13.77905 -13.57182 -13.33574 -13.09416 -12.95052 -12.69417 -12.59904 -12.53470 -12.10184 -11.92179 -11.71195 -11.51549 -11.39780 -11.18627 -10.48986 -10.02733 -8.92292 -8.31035 -7.97340 -6.20033 0.36851 0.86493 1.39523 1.41461 1.49350 1.99319 2.12615 2.46537 3.11373 3.19306 3.88846 4.04297 4.12727 4.18025 4.35833 4.42794 4.51018 4.55541 4.66569 4.71360 4.77291 4.82547 4.90945 5.02415 5.13520 5.24229 5.27527 5.36867 5.44721 5.57104 5.68128 5.82459 5.85472 5.94605 6.11790 6.18102 6.35557 6.50347 6.67520 6.90759 7.45870 8.97816 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.008318 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.680487 B = 3365.296613 C = 4028.947474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 C -0.039 4.039 4 C -0.166 4.166 5 C -0.096 4.096 6 C -0.145 4.145 7 C 0.081 3.919 8 C -0.134 4.134 9 C -0.154 4.154 10 C 0.089 3.911 11 C -0.509 4.509 12 H 0.040 0.960 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.950 3.050 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.272 1.272 19 C 0.015 3.985 20 N -0.493 5.493 21 C 0.079 3.921 22 H 0.033 0.967 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.137 0.863 28 H 0.157 0.843 29 H 0.143 0.857 30 H -0.008 1.008 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.174 0.826 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 13.293 -8.034 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.134 4.134 3 C -0.039 4.039 4 C -0.185 4.185 5 C -0.115 4.115 6 C -0.166 4.166 7 C -0.026 4.026 8 C -0.139 4.139 9 C -0.161 4.161 10 C 0.052 3.948 11 C -0.547 4.547 12 H 0.059 0.941 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.776 3.224 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.197 1.197 19 C -0.108 4.108 20 N -0.177 5.177 21 C -0.062 4.062 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.175 0.825 29 H 0.161 0.839 30 H 0.011 0.989 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.191 0.809 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.072 13.480 -7.790 15.869 hybrid contribution 0.477 -1.037 0.742 1.361 sum 3.549 12.442 -7.048 14.734 Atomic orbital electron populations 1.21566 0.94618 1.01232 1.00985 1.20638 0.96594 0.93305 1.02832 1.19333 0.97129 0.95575 0.91883 1.20740 1.04557 0.96416 0.96804 1.21095 0.98557 0.93861 0.97938 1.20237 1.06471 1.01009 0.88848 1.18620 1.03495 0.94144 0.86314 1.19345 1.06544 0.94610 0.93441 1.20994 1.06543 0.96652 0.91877 1.17534 0.95108 0.88196 0.94003 1.21227 0.93510 0.97613 1.42348 0.94128 1.25735 0.97921 0.99660 0.95446 1.70061 1.21239 1.19588 1.45821 0.85727 0.79789 0.78264 0.78644 1.19723 1.20522 1.19727 1.21670 1.04624 0.88113 0.96432 1.43872 1.57003 1.13218 1.03600 1.22121 1.01207 0.80300 1.02527 0.94785 0.91414 0.92764 0.90532 0.91690 0.84495 0.82536 0.83891 0.98946 0.95965 0.92842 0.80919 0.90882 0.88655 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.33 71.98 0.67 -4.12 16 2 C -0.10 -3.93 5.43 29.85 0.16 -3.76 16 3 C -0.04 -1.53 5.13 -19.90 -0.10 -1.64 16 4 C -0.17 -5.22 9.60 22.03 0.21 -5.01 16 5 C -0.10 -2.55 10.01 22.30 0.22 -2.33 16 6 C -0.15 -4.15 9.96 22.37 0.22 -3.93 16 7 C 0.08 2.95 6.81 39.03 0.27 3.22 16 8 C -0.13 -5.84 6.15 -20.20 -0.12 -5.96 16 9 C -0.15 -7.32 5.50 -18.63 -0.10 -7.42 16 10 C 0.09 4.90 4.60 29.10 0.13 5.03 16 11 C -0.51 -29.69 7.92 25.60 0.20 -29.49 16 12 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 13 C 0.01 0.59 5.46 84.65 0.46 1.06 16 14 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 15 Si 0.95 45.36 29.54 68.60 2.03 47.39 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 19 C 0.01 0.59 11.20 83.00 0.93 1.52 16 20 N -0.49 -16.42 3.18 -539.27 -1.71 -18.13 16 21 C 0.08 1.62 11.03 127.77 1.41 3.03 16 22 H 0.03 1.43 6.81 -2.39 -0.02 1.42 16 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.08 2.68 8.05 -2.39 -0.02 2.66 16 26 H 0.06 3.24 5.36 -2.39 -0.01 3.23 16 27 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 30 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 31 H 0.02 1.28 4.86 -2.39 -0.01 1.27 16 32 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.17 6.12 8.06 -2.91 -0.02 6.10 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.54 8.10 -2.38 -0.02 1.52 16 Total: -1.00 -70.00 297.62 6.22 -63.78 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.06 Total: 12.59 kcal Atomic # 6 Polarization: -54.36 SS G_CDS: 4.57 Total: -49.80 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -1.43 Total: -73.95 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.00 6.22 -63.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.995 kcal (2) G-P(sol) polarization free energy of solvation -69.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds