Wall clock time and date at job start Mon Mar 30 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37786 * 120.11220 * 2 1 4 4 C 1.38791 * 120.66653 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.73511 * 180.30090 * 4 3 2 6 6 H 1.09001 * 109.47550 * 359.72808 * 5 4 3 7 7 C 1.52998 * 109.47419 * 119.72826 * 5 4 3 8 8 C 1.50705 * 109.47088 * 239.72702 * 5 4 3 9 9 H 1.07994 * 119.99931 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00152 * 179.97438 * 8 5 4 11 11 N 1.31514 * 120.00424 * 180.02562 * 10 8 5 12 12 Si 1.86804 * 119.99907 * 0.02562 * 10 8 5 13 13 H 1.48503 * 109.46975 * 89.99921 * 12 10 8 14 14 H 1.48497 * 109.47282 * 209.99725 * 12 10 8 15 15 H 1.48500 * 109.46930 * 330.00181 * 12 10 8 16 16 C 1.36665 * 120.52508 * 0.02788 * 4 3 2 17 17 C 1.39592 * 119.76657 * 359.97438 * 16 4 3 18 18 C 1.46487 * 134.03456 * 180.02562 * 17 16 4 19 19 C 1.34234 * 106.99756 * 179.97438 * 18 17 16 20 20 N 1.36834 * 109.93900 * 0.02562 * 19 18 17 21 21 C 1.46501 * 125.06018 * 180.02562 * 20 19 18 22 22 C 1.37689 * 109.87344 * 359.97438 * 20 19 18 23 23 H 1.09009 * 109.46870 * 269.97810 * 1 2 3 24 24 H 1.09001 * 109.47287 * 29.96760 * 1 2 3 25 25 H 1.08991 * 109.47645 * 149.97653 * 1 2 3 26 26 H 1.07996 * 119.66820 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.46775 * 59.99507 * 7 5 4 28 28 H 1.08998 * 109.47399 * 179.97438 * 7 5 4 29 29 H 1.08997 * 109.46773 * 300.00184 * 7 5 4 30 30 H 0.96998 * 120.00231 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.11614 * 179.97438 * 16 4 3 32 32 H 1.08001 * 126.49894 * 359.97397 * 18 17 16 33 33 H 1.07998 * 125.02766 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.46651 * 269.95120 * 21 20 19 35 35 H 1.08998 * 109.47277 * 29.95254 * 21 20 19 36 36 H 1.08999 * 109.47153 * 149.95753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 0.0005 5 6 4.3208 2.5210 0.0074 6 1 3.6008 3.3394 0.0064 7 6 5.1936 2.6113 1.2608 8 6 5.1916 2.6165 -1.2190 9 1 5.2106 1.8058 -1.9321 10 6 5.9631 3.7394 -1.4309 11 7 6.7225 3.8230 -2.5014 12 14 5.9296 5.1421 -0.1977 13 1 6.9766 4.9210 0.8320 14 1 6.1888 6.4247 -0.8996 15 1 4.5968 5.1955 0.4551 16 6 4.2916 0.0349 0.0005 17 6 3.6116 -1.1842 0.0005 18 6 4.0352 -2.5865 0.0009 19 6 2.9199 -3.3334 0.0012 20 7 1.8164 -2.5242 0.0004 21 6 0.4287 -2.9936 0.0009 22 6 2.2047 -1.2032 0.0001 23 1 -0.3633 -0.0004 1.0278 24 1 -0.3634 0.8903 -0.5133 25 1 -0.3634 -0.8897 -0.5141 26 1 1.6547 2.1251 0.0004 27 1 5.9137 1.7929 1.2618 28 1 5.7254 3.5627 1.2655 29 1 4.5639 2.5422 2.1477 30 1 7.2656 4.6128 -2.6503 31 1 5.3715 0.0530 0.0005 32 1 5.0521 -2.9503 0.0010 33 1 2.8969 -4.4131 0.0019 34 1 0.0842 -3.1103 -1.0266 35 1 0.3698 -3.9530 0.5150 36 1 -0.2005 -2.2668 0.5147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260244408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:34 Heat of formation + Delta-G solvation = 59.106395 kcal Electronic energy + Delta-G solvation = -17149.328134 eV Core-core repulsion = 14598.948701 eV Total energy + Delta-G solvation = -2550.379433 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.92932 -37.34312 -34.27568 -33.29251 -31.58174 -29.70765 -28.21020 -27.40031 -25.05828 -24.82412 -22.47848 -21.28285 -19.58263 -19.08436 -16.84264 -16.10378 -15.83227 -15.18746 -14.87454 -14.15972 -13.73834 -13.40513 -13.24776 -13.01133 -12.68289 -12.54358 -12.40454 -12.14746 -12.03469 -11.83824 -11.50305 -11.24099 -10.88169 -10.52515 -10.13766 -10.00455 -9.89192 -9.26909 -9.01525 -8.95335 -8.49655 -7.50524 -6.94510 -6.00274 -3.98927 1.68067 2.31639 3.09322 3.11214 3.32379 3.42345 3.44987 4.46603 4.55182 4.78695 5.01803 5.13222 5.16650 5.26973 5.33218 5.37293 5.47482 5.74551 5.78574 5.90251 6.01506 6.08535 6.23849 6.33817 6.42851 6.50043 6.61053 6.68691 6.82804 7.00663 7.19035 7.19770 7.32124 7.36092 7.66809 7.73107 7.85554 7.85750 8.60917 9.05844 9.61429 11.12781 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035663 B = 0.006302 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.935553 B = 4442.133465 C = 4794.176492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.113 4.113 3 C -0.096 4.096 4 C -0.053 4.053 5 C 0.042 3.958 6 H 0.033 0.967 7 C -0.143 4.143 8 C -0.504 4.504 9 H 0.076 0.924 10 C 0.069 3.931 11 N -0.902 5.902 12 Si 0.888 3.112 13 H -0.280 1.280 14 H -0.299 1.299 15 H -0.267 1.267 16 C -0.064 4.064 17 C -0.107 4.107 18 C -0.201 4.201 19 C 0.034 3.966 20 N -0.493 5.493 21 C 0.076 3.924 22 C 0.084 3.916 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.118 0.882 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.160 0.840 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.768 -12.061 6.965 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.115 4.115 3 C -0.115 4.115 4 C -0.054 4.054 5 C 0.023 3.977 6 H 0.051 0.949 7 C -0.200 4.200 8 C -0.542 4.542 9 H 0.094 0.906 10 C -0.132 4.132 11 N -0.540 5.540 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.227 1.227 15 H -0.192 1.192 16 C -0.083 4.083 17 C -0.111 4.111 18 C -0.227 4.227 19 C -0.091 4.091 20 N -0.179 5.179 21 C -0.066 4.066 22 C -0.020 4.020 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.136 0.864 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.159 0.841 33 H 0.177 0.823 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.974 -12.091 6.859 18.347 hybrid contribution 0.138 0.704 0.476 0.861 sum -11.836 -11.387 7.335 17.988 Atomic orbital electron populations 1.20830 0.92344 1.02262 1.01290 1.18674 0.94586 0.90303 1.07969 1.20720 0.94057 0.95830 1.00865 1.19627 0.92486 0.96129 0.97182 1.18269 0.94475 0.90213 0.94708 0.94920 1.22167 0.99729 1.00558 0.97562 1.21031 1.23470 1.04391 1.05308 0.90573 1.25010 0.94990 0.98012 0.95236 1.69898 1.27842 1.29218 1.27053 0.86843 0.78909 0.81425 0.80946 1.20669 1.22682 1.19167 1.20172 0.99906 0.89438 0.98777 1.19249 0.91817 0.93595 1.06428 1.21664 0.97695 0.91286 1.12050 1.21590 0.85386 0.95848 1.06237 1.43605 1.05416 1.04109 1.64754 1.22035 0.81311 1.00834 1.02380 1.17970 0.93659 0.83816 1.06540 0.92164 0.91591 0.92289 0.86369 0.92759 0.94282 0.95168 0.92738 0.85828 0.84075 0.82292 0.91962 0.90721 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 8.80 36.01 0.32 -1.09 16 2 C -0.11 -1.94 5.89 -104.47 -0.62 -2.55 16 3 C -0.10 -1.85 9.29 -39.54 -0.37 -2.22 16 4 C -0.05 -1.16 4.72 -104.99 -0.50 -1.66 16 5 C 0.04 1.02 2.06 -92.92 -0.19 0.83 16 6 H 0.03 0.80 6.91 -51.93 -0.36 0.44 16 7 C -0.14 -3.19 8.48 37.16 0.32 -2.88 16 8 C -0.50 -14.34 8.80 -34.44 -0.30 -14.65 16 9 H 0.08 2.38 7.83 -52.49 -0.41 1.97 16 10 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 11 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 12 Si 0.89 22.23 24.37 -169.99 -4.14 18.09 16 13 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 14 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 15 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 16 C -0.06 -1.37 8.66 -39.65 -0.34 -1.71 16 17 C -0.11 -2.06 6.37 -105.14 -0.67 -2.73 16 18 C -0.20 -3.21 11.08 -37.67 -0.42 -3.63 16 19 C 0.03 0.45 11.29 -16.73 -0.19 0.26 16 20 N -0.49 -7.01 3.18 -121.81 -0.39 -7.40 16 21 C 0.08 0.73 9.77 59.85 0.58 1.31 16 22 C 0.08 1.48 6.74 -83.99 -0.57 0.92 16 23 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 25 H 0.06 0.65 5.51 -51.93 -0.29 0.37 16 26 H 0.12 2.09 7.93 -52.49 -0.42 1.68 16 27 H 0.05 1.18 7.36 -51.93 -0.38 0.79 16 28 H 0.04 0.90 3.27 -51.93 -0.17 0.73 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.12 2.69 7.53 -52.49 -0.39 2.29 16 32 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.75 5.68 -51.93 -0.29 0.46 16 LS Contribution 286.50 15.07 4.32 4.32 Total: -1.00 -32.62 286.50 -7.33 -39.95 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.85 Total: 0.08 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -3.04 Total: -27.89 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.39 Total: -34.54 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.62 -7.33 -39.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260244408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.052 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds