Wall clock time and date at job start Mon Mar 30 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37786 * 120.11220 * 2 1 4 4 C 1.38791 * 120.66653 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.73511 * 180.30090 * 4 3 2 6 6 H 1.09001 * 109.47550 * 359.72808 * 5 4 3 7 7 C 1.52998 * 109.47419 * 119.72826 * 5 4 3 8 8 C 1.50705 * 109.47088 * 239.72702 * 5 4 3 9 9 H 1.07994 * 119.99931 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00152 * 179.97438 * 8 5 4 11 11 N 1.31514 * 120.00424 * 180.02562 * 10 8 5 12 12 Si 1.86804 * 119.99907 * 0.02562 * 10 8 5 13 13 H 1.48503 * 109.46975 * 89.99921 * 12 10 8 14 14 H 1.48497 * 109.47282 * 209.99725 * 12 10 8 15 15 H 1.48500 * 109.46930 * 330.00181 * 12 10 8 16 16 C 1.36665 * 120.52508 * 0.02788 * 4 3 2 17 17 C 1.39592 * 119.76657 * 359.97438 * 16 4 3 18 18 C 1.46487 * 134.03456 * 180.02562 * 17 16 4 19 19 C 1.34234 * 106.99756 * 179.97438 * 18 17 16 20 20 N 1.36834 * 109.93900 * 0.02562 * 19 18 17 21 21 C 1.46501 * 125.06018 * 180.02562 * 20 19 18 22 22 C 1.37689 * 109.87344 * 359.97438 * 20 19 18 23 23 H 1.09009 * 109.46870 * 269.97810 * 1 2 3 24 24 H 1.09001 * 109.47287 * 29.96760 * 1 2 3 25 25 H 1.08991 * 109.47645 * 149.97653 * 1 2 3 26 26 H 1.07996 * 119.66820 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.46775 * 59.99507 * 7 5 4 28 28 H 1.08998 * 109.47399 * 179.97438 * 7 5 4 29 29 H 1.08997 * 109.46773 * 300.00184 * 7 5 4 30 30 H 0.96998 * 120.00231 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.11614 * 179.97438 * 16 4 3 32 32 H 1.08001 * 126.49894 * 359.97397 * 18 17 16 33 33 H 1.07998 * 125.02766 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.46651 * 269.95120 * 21 20 19 35 35 H 1.08998 * 109.47277 * 29.95254 * 21 20 19 36 36 H 1.08999 * 109.47153 * 149.95753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 0.0005 5 6 4.3208 2.5210 0.0074 6 1 3.6008 3.3394 0.0064 7 6 5.1936 2.6113 1.2608 8 6 5.1916 2.6165 -1.2190 9 1 5.2106 1.8058 -1.9321 10 6 5.9631 3.7394 -1.4309 11 7 6.7225 3.8230 -2.5014 12 14 5.9296 5.1421 -0.1977 13 1 6.9766 4.9210 0.8320 14 1 6.1888 6.4247 -0.8996 15 1 4.5968 5.1955 0.4551 16 6 4.2916 0.0349 0.0005 17 6 3.6116 -1.1842 0.0005 18 6 4.0352 -2.5865 0.0009 19 6 2.9199 -3.3334 0.0012 20 7 1.8164 -2.5242 0.0004 21 6 0.4287 -2.9936 0.0009 22 6 2.2047 -1.2032 0.0001 23 1 -0.3633 -0.0004 1.0278 24 1 -0.3634 0.8903 -0.5133 25 1 -0.3634 -0.8897 -0.5141 26 1 1.6547 2.1251 0.0004 27 1 5.9137 1.7929 1.2618 28 1 5.7254 3.5627 1.2655 29 1 4.5639 2.5422 2.1477 30 1 7.2656 4.6128 -2.6503 31 1 5.3715 0.0530 0.0005 32 1 5.0521 -2.9503 0.0010 33 1 2.8969 -4.4131 0.0019 34 1 0.0842 -3.1103 -1.0266 35 1 0.3698 -3.9530 0.5150 36 1 -0.2005 -2.2668 0.5147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260244408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:34 Heat of formation + Delta-G solvation = 39.616706 kcal Electronic energy + Delta-G solvation = -17150.173270 eV Core-core repulsion = 14598.948701 eV Total energy + Delta-G solvation = -2551.224570 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.17554 -38.82913 -35.95856 -34.60397 -33.52044 -31.06630 -29.61110 -28.50072 -27.07223 -26.04698 -24.08797 -22.60647 -20.99421 -20.56072 -18.73045 -17.58285 -17.18398 -16.79893 -16.20061 -15.56420 -15.33684 -14.80360 -14.40129 -14.28327 -14.18126 -14.02666 -13.80757 -13.48633 -13.36028 -13.31245 -13.06314 -12.83095 -12.39115 -12.07615 -11.78935 -11.68191 -11.57987 -11.17274 -11.02173 -10.70262 -10.26116 -8.88604 -8.30518 -8.23460 -6.30436 0.32062 0.84486 1.32358 1.37289 1.48916 1.88965 2.05785 2.34717 3.03403 3.11814 3.85882 3.99330 4.08220 4.10102 4.17770 4.47034 4.49981 4.56897 4.63889 4.71004 4.74231 4.78815 4.83013 4.86488 4.94741 5.05942 5.06877 5.17328 5.22156 5.38885 5.53899 5.65171 5.72123 5.92478 5.95461 6.12779 6.36261 6.45757 6.59190 6.75675 7.33466 8.90273 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035663 B = 0.006302 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.935553 B = 4442.133465 C = 4794.176492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.121 4.121 4 C -0.077 4.077 5 C 0.044 3.956 6 H 0.034 0.966 7 C -0.138 4.138 8 C -0.506 4.506 9 H 0.026 0.974 10 C 0.009 3.991 11 N -0.952 5.952 12 Si 0.954 3.046 13 H -0.267 1.267 14 H -0.298 1.298 15 H -0.244 1.244 16 C -0.093 4.093 17 C -0.133 4.133 18 C -0.243 4.243 19 C 0.067 3.933 20 N -0.489 5.489 21 C 0.065 3.935 22 C 0.069 3.931 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.265 0.735 31 H 0.096 0.904 32 H 0.149 0.851 33 H 0.212 0.788 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.860 -13.686 8.801 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.141 4.141 4 C -0.078 4.078 5 C 0.025 3.975 6 H 0.052 0.948 7 C -0.195 4.195 8 C -0.544 4.544 9 H 0.045 0.955 10 C -0.187 4.187 11 N -0.593 5.593 12 Si 0.781 3.219 13 H -0.193 1.193 14 H -0.226 1.226 15 H -0.168 1.168 16 C -0.112 4.112 17 C -0.138 4.138 18 C -0.268 4.268 19 C -0.059 4.059 20 N -0.172 5.172 21 C -0.075 4.075 22 C -0.037 4.037 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.148 0.852 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.167 0.833 33 H 0.228 0.772 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.106 -13.743 8.709 22.201 hybrid contribution 1.021 0.956 -0.170 1.409 sum -14.084 -12.786 8.539 20.851 Atomic orbital electron populations 1.20932 0.88700 1.03746 1.03110 1.19111 0.97091 0.89283 1.04674 1.20837 0.93007 0.97513 1.02699 1.19530 0.93871 0.94974 0.99428 1.18172 0.94079 0.91877 0.93373 0.94814 1.22070 0.99708 0.99944 0.97827 1.21238 1.24172 1.02851 1.06123 0.95549 1.25912 0.94485 1.01032 0.97292 1.70059 1.29344 1.30400 1.29505 0.85770 0.80291 0.77356 0.78533 1.19293 1.22564 1.16824 1.20026 0.98720 0.90962 1.01510 1.19611 0.93388 0.94292 1.06462 1.21916 0.99527 0.90171 1.15193 1.22328 0.84063 0.97759 1.01745 1.43992 1.07662 1.02706 1.62880 1.22441 0.78409 1.02644 1.04015 1.18147 0.93056 0.85770 1.06711 0.89952 0.90848 0.90165 0.85221 0.93401 0.94745 0.92191 0.92581 0.88574 0.83330 0.77188 0.90534 0.87305 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 8.80 71.24 0.63 -1.73 16 2 C -0.10 -3.25 5.89 -19.77 -0.12 -3.37 16 3 C -0.12 -4.71 9.29 22.30 0.21 -4.50 16 4 C -0.08 -3.51 4.72 -20.10 -0.09 -3.61 16 5 C 0.04 2.18 2.06 -12.29 -0.03 2.15 16 6 H 0.03 1.65 6.91 -2.39 -0.02 1.64 16 7 C -0.14 -6.21 8.48 71.98 0.61 -5.60 16 8 C -0.51 -30.51 8.80 25.60 0.23 -30.29 16 9 H 0.03 1.79 7.83 -2.91 -0.02 1.77 16 10 C 0.01 0.55 5.45 84.65 0.46 1.01 16 11 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 12 Si 0.95 46.48 24.37 68.60 1.67 48.15 16 13 H -0.27 -12.38 6.87 99.48 0.68 -11.70 16 14 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 15 H -0.24 -10.96 6.53 99.48 0.65 -10.31 16 16 C -0.09 -4.26 8.66 22.23 0.19 -4.06 16 17 C -0.13 -5.24 6.37 -20.20 -0.13 -5.37 16 18 C -0.24 -7.63 11.08 23.51 0.26 -7.37 16 19 C 0.07 1.55 11.29 83.00 0.94 2.49 16 20 N -0.49 -12.07 3.18 -539.28 -1.71 -13.79 16 21 C 0.06 0.88 9.77 127.77 1.25 2.13 16 22 C 0.07 2.32 6.74 39.03 0.26 2.59 16 23 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 25 H 0.08 1.41 5.51 -2.39 -0.01 1.39 16 26 H 0.13 4.54 7.93 -2.91 -0.02 4.52 16 27 H 0.05 2.15 7.36 -2.39 -0.02 2.14 16 28 H 0.03 1.55 3.27 -2.39 -0.01 1.54 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 31 H 0.10 4.68 7.53 -2.91 -0.02 4.66 16 32 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 33 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 1.15 5.68 -2.39 -0.01 1.14 16 Total: -1.00 -76.44 286.50 5.91 -70.53 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.99 Total: 12.16 kcal Atomic # 6 Polarization: -60.20 SS G_CDS: 4.67 Total: -55.54 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.41 Total: -75.30 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.67 Total: 48.15 kcal Total: -76.44 5.91 -70.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260244408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.147 kcal (2) G-P(sol) polarization free energy of solvation -76.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds