Wall clock time and date at job start Mon Mar 30 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37790 * 120.10981 * 2 1 4 4 C 1.38792 * 120.66089 * 180.23707 * 3 2 1 5 5 C 1.50701 * 119.73309 * 179.74577 * 4 3 2 6 6 H 1.09001 * 109.47221 * 0.02562 * 5 4 3 7 7 C 1.52994 * 109.47415 * 240.00179 * 5 4 3 8 8 C 1.50706 * 109.47267 * 119.99828 * 5 4 3 9 9 H 1.08001 * 119.99554 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00008 * 179.97438 * 8 5 4 11 11 N 1.31504 * 120.00285 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 119.99818 * 180.02562 * 10 8 5 13 13 H 1.48508 * 109.46880 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47248 * 120.00253 * 12 10 8 15 15 H 1.48499 * 109.47165 * 240.00257 * 12 10 8 16 16 C 1.36662 * 120.53388 * 359.50279 * 4 3 2 17 17 C 1.39587 * 119.76070 * 0.47250 * 16 4 3 18 18 C 1.46491 * 134.03905 * 179.74989 * 17 16 4 19 19 C 1.34237 * 107.00058 * 180.02562 * 18 17 16 20 20 N 1.36829 * 109.94012 * 0.02562 * 19 18 17 21 21 C 1.46503 * 125.06573 * 179.97438 * 20 19 18 22 22 C 1.37695 * 109.87429 * 0.02562 * 20 19 18 23 23 H 1.08994 * 109.47415 * 97.04958 * 1 2 3 24 24 H 1.09004 * 109.46832 * 217.04510 * 1 2 3 25 25 H 1.08999 * 109.47179 * 337.04305 * 1 2 3 26 26 H 1.08002 * 119.66781 * 359.95931 * 3 2 1 27 27 H 1.09003 * 109.47690 * 180.02562 * 7 5 4 28 28 H 1.09003 * 109.46891 * 299.99490 * 7 5 4 29 29 H 1.08999 * 109.47188 * 59.99902 * 7 5 4 30 30 H 0.97001 * 120.00367 * 180.02562 * 11 10 8 31 31 H 1.07999 * 120.11638 * 180.26045 * 16 4 3 32 32 H 1.08004 * 126.50199 * 0.05564 * 18 17 16 33 33 H 1.08001 * 125.03436 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.46964 * 262.97945 * 21 20 19 35 35 H 1.08995 * 109.47161 * 22.98491 * 21 20 19 36 36 H 1.08999 * 109.47092 * 142.98814 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5861 1.2053 -0.0049 5 6 4.3208 2.5211 -0.0106 6 1 3.6008 3.3394 -0.0096 7 6 5.1947 2.6118 -1.2632 8 6 5.1904 2.6162 1.2166 9 1 5.2093 1.8048 1.9291 10 6 5.9624 3.7386 1.4291 11 7 5.9397 4.7263 0.5612 12 14 7.0407 3.8562 2.9499 13 1 6.8882 2.6218 3.7615 14 1 8.4601 4.0063 2.5400 15 1 6.6315 5.0336 3.7571 16 6 4.2917 0.0350 0.0003 17 6 3.6117 -1.1841 0.0008 18 6 4.0353 -2.5864 0.0010 19 6 2.9199 -3.3333 0.0008 20 7 1.8165 -2.5242 0.0000 21 6 0.4287 -2.9935 -0.0010 22 6 2.2047 -1.2031 -0.0011 23 1 -0.3634 -0.1261 -1.0198 24 1 -0.3633 -0.8203 0.6191 25 1 -0.3633 0.9463 0.4008 26 1 1.6546 2.1252 -0.0007 27 1 5.7266 3.5633 -1.2671 28 1 5.9149 1.7935 -1.2637 29 1 4.5658 2.5430 -2.1508 30 1 6.4832 5.5158 0.7105 31 1 5.3715 0.0533 0.0007 32 1 5.0522 -2.9504 0.0016 33 1 2.8968 -4.4131 0.0005 34 1 0.0450 -2.9910 -1.0212 35 1 0.3873 -4.0061 0.4004 36 1 -0.1788 -2.3325 0.6172 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260244414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:37 Heat of formation + Delta-G solvation = 52.302346 kcal Electronic energy + Delta-G solvation = -17105.690207 eV Core-core repulsion = 14555.015728 eV Total energy + Delta-G solvation = -2550.674479 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86035 -37.19225 -34.15144 -33.24236 -31.34039 -29.31755 -27.89853 -27.32546 -25.05993 -24.76383 -22.31721 -21.17805 -19.54674 -19.06585 -16.60813 -15.89102 -15.78128 -15.19211 -14.69811 -14.07881 -13.63805 -13.36011 -13.09218 -12.88668 -12.58928 -12.54216 -12.31150 -11.94299 -11.53266 -11.43720 -11.21690 -10.94884 -10.83689 -10.44528 -10.31128 -10.01633 -9.83306 -9.29489 -8.94738 -8.80743 -8.29411 -7.42666 -6.86271 -5.92510 -3.98274 1.75262 2.40514 3.13722 3.15805 3.34215 3.42135 3.47689 4.47353 4.66111 4.79368 5.05606 5.11844 5.23984 5.28918 5.38403 5.44655 5.59597 5.82046 5.82797 6.04067 6.12306 6.16074 6.35440 6.55667 6.59537 6.72954 6.96852 7.07888 7.25441 7.31563 7.37243 7.42154 7.53456 7.72511 7.82454 7.92762 8.11940 8.20330 8.51553 9.05095 9.65850 11.12982 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031523 B = 0.006182 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.018527 B = 4528.443772 C = 4841.862092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.114 4.114 3 C -0.096 4.096 4 C -0.057 4.057 5 C 0.075 3.925 6 H 0.032 0.968 7 C -0.131 4.131 8 C -0.502 4.502 9 H 0.058 0.942 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.285 1.285 16 C -0.071 4.071 17 C -0.107 4.107 18 C -0.204 4.204 19 C 0.033 3.967 20 N -0.494 5.494 21 C 0.076 3.924 22 C 0.081 3.919 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.028 0.972 29 H 0.007 0.993 30 H 0.259 0.741 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 -13.421 -2.036 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.116 4.116 3 C -0.115 4.115 4 C -0.058 4.058 5 C 0.056 3.944 6 H 0.050 0.950 7 C -0.189 4.189 8 C -0.540 4.540 9 H 0.076 0.924 10 C -0.141 4.141 11 N -0.531 5.531 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.090 4.090 17 C -0.111 4.111 18 C -0.230 4.230 19 C -0.092 4.092 20 N -0.179 5.179 21 C -0.066 4.066 22 C -0.023 4.023 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.136 0.864 27 H 0.102 0.898 28 H 0.047 0.953 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.832 -13.383 -2.062 16.734 hybrid contribution 0.609 0.006 0.847 1.043 sum -9.223 -13.377 -1.216 16.294 Atomic orbital electron populations 1.20847 0.92419 1.02200 1.01142 1.18703 0.94542 0.90374 1.08026 1.20786 0.94259 0.95681 1.00783 1.20109 0.92648 0.97207 0.95793 1.17824 0.93853 0.87996 0.94696 0.94962 1.21787 0.99008 1.02823 0.95283 1.21226 1.24252 1.02636 1.05876 0.92424 1.24957 0.96936 0.95737 0.96427 1.69896 1.40903 1.07058 1.35251 0.86563 0.80334 0.77978 0.83334 1.19764 1.21076 1.21118 1.20159 0.99742 0.89478 0.99577 1.19271 0.91847 0.93564 1.06417 1.21646 0.97592 0.91384 1.12358 1.21576 0.85448 0.95766 1.06374 1.43594 1.05341 1.04145 1.64849 1.22058 0.81361 1.00666 1.02475 1.17951 0.93654 0.83766 1.06893 0.92269 0.92340 0.91628 0.86398 0.89804 0.95332 0.97358 0.93142 0.86117 0.84219 0.82400 0.92023 0.90597 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.30 36.00 0.33 -1.12 16 2 C -0.11 -2.03 5.89 -104.47 -0.62 -2.65 16 3 C -0.10 -1.94 9.27 -39.54 -0.37 -2.31 16 4 C -0.06 -1.29 4.72 -104.99 -0.50 -1.79 16 5 C 0.07 1.92 2.47 -92.92 -0.23 1.69 16 6 H 0.03 0.88 7.86 -51.93 -0.41 0.47 16 7 C -0.13 -3.26 8.78 37.15 0.33 -2.94 16 8 C -0.50 -13.99 8.21 -34.44 -0.28 -14.27 16 9 H 0.06 1.63 7.58 -52.49 -0.40 1.23 16 10 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 11 N -0.89 -25.67 11.32 55.43 0.63 -25.05 16 12 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 C -0.07 -1.55 8.66 -39.65 -0.34 -1.89 16 17 C -0.11 -2.11 6.37 -105.14 -0.67 -2.78 16 18 C -0.20 -3.32 11.08 -37.67 -0.42 -3.74 16 19 C 0.03 0.45 11.27 -16.73 -0.19 0.26 16 20 N -0.49 -7.21 3.18 -121.80 -0.39 -7.60 16 21 C 0.08 0.75 10.32 59.85 0.62 1.37 16 22 C 0.08 1.47 6.74 -83.98 -0.57 0.91 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.67 5.08 -51.93 -0.26 0.41 16 25 H 0.06 0.82 8.03 -51.93 -0.42 0.40 16 26 H 0.12 2.23 7.92 -52.49 -0.42 1.82 16 27 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 28 H 0.03 0.68 7.37 -51.93 -0.38 0.29 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.12 2.68 7.53 -52.49 -0.40 2.28 16 32 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 36 H 0.08 0.78 5.17 -51.93 -0.27 0.51 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -31.09 293.30 -8.29 -39.37 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.93 Total: -0.08 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -2.99 Total: -27.68 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.24 Total: -32.65 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.09 -8.29 -39.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260244414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.677 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds