Wall clock time and date at job start Mon Mar 30 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37790 * 120.10981 * 2 1 4 4 C 1.38792 * 120.66089 * 180.23707 * 3 2 1 5 5 C 1.50701 * 119.73309 * 179.74577 * 4 3 2 6 6 H 1.09001 * 109.47221 * 0.02562 * 5 4 3 7 7 C 1.52994 * 109.47415 * 240.00179 * 5 4 3 8 8 C 1.50706 * 109.47267 * 119.99828 * 5 4 3 9 9 H 1.08001 * 119.99554 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00008 * 179.97438 * 8 5 4 11 11 N 1.31504 * 120.00285 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 119.99818 * 180.02562 * 10 8 5 13 13 H 1.48508 * 109.46880 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47248 * 120.00253 * 12 10 8 15 15 H 1.48499 * 109.47165 * 240.00257 * 12 10 8 16 16 C 1.36662 * 120.53388 * 359.50279 * 4 3 2 17 17 C 1.39587 * 119.76070 * 0.47250 * 16 4 3 18 18 C 1.46491 * 134.03905 * 179.74989 * 17 16 4 19 19 C 1.34237 * 107.00058 * 180.02562 * 18 17 16 20 20 N 1.36829 * 109.94012 * 0.02562 * 19 18 17 21 21 C 1.46503 * 125.06573 * 179.97438 * 20 19 18 22 22 C 1.37695 * 109.87429 * 0.02562 * 20 19 18 23 23 H 1.08994 * 109.47415 * 97.04958 * 1 2 3 24 24 H 1.09004 * 109.46832 * 217.04510 * 1 2 3 25 25 H 1.08999 * 109.47179 * 337.04305 * 1 2 3 26 26 H 1.08002 * 119.66781 * 359.95931 * 3 2 1 27 27 H 1.09003 * 109.47690 * 180.02562 * 7 5 4 28 28 H 1.09003 * 109.46891 * 299.99490 * 7 5 4 29 29 H 1.08999 * 109.47188 * 59.99902 * 7 5 4 30 30 H 0.97001 * 120.00367 * 180.02562 * 11 10 8 31 31 H 1.07999 * 120.11638 * 180.26045 * 16 4 3 32 32 H 1.08004 * 126.50199 * 0.05564 * 18 17 16 33 33 H 1.08001 * 125.03436 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.46964 * 262.97945 * 21 20 19 35 35 H 1.08995 * 109.47161 * 22.98491 * 21 20 19 36 36 H 1.08999 * 109.47092 * 142.98814 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5861 1.2053 -0.0049 5 6 4.3208 2.5211 -0.0106 6 1 3.6008 3.3394 -0.0096 7 6 5.1947 2.6118 -1.2632 8 6 5.1904 2.6162 1.2166 9 1 5.2093 1.8048 1.9291 10 6 5.9624 3.7386 1.4291 11 7 5.9397 4.7263 0.5612 12 14 7.0407 3.8562 2.9499 13 1 6.8882 2.6218 3.7615 14 1 8.4601 4.0063 2.5400 15 1 6.6315 5.0336 3.7571 16 6 4.2917 0.0350 0.0003 17 6 3.6117 -1.1841 0.0008 18 6 4.0353 -2.5864 0.0010 19 6 2.9199 -3.3333 0.0008 20 7 1.8165 -2.5242 0.0000 21 6 0.4287 -2.9935 -0.0010 22 6 2.2047 -1.2031 -0.0011 23 1 -0.3634 -0.1261 -1.0198 24 1 -0.3633 -0.8203 0.6191 25 1 -0.3633 0.9463 0.4008 26 1 1.6546 2.1252 -0.0007 27 1 5.7266 3.5633 -1.2671 28 1 5.9149 1.7935 -1.2637 29 1 4.5658 2.5430 -2.1508 30 1 6.4832 5.5158 0.7105 31 1 5.3715 0.0533 0.0007 32 1 5.0522 -2.9504 0.0016 33 1 2.8968 -4.4131 0.0005 34 1 0.0450 -2.9910 -1.0212 35 1 0.3873 -4.0061 0.4004 36 1 -0.1788 -2.3325 0.6172 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260244414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:36 Heat of formation + Delta-G solvation = 36.008825 kcal Electronic energy + Delta-G solvation = -17106.396747 eV Core-core repulsion = 14555.015728 eV Total energy + Delta-G solvation = -2551.381019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.14385 -38.72750 -35.92518 -34.58127 -33.10516 -30.76431 -29.42246 -28.46928 -27.19979 -25.97237 -23.98213 -22.56291 -21.02622 -20.54781 -18.34061 -17.54398 -17.13286 -16.66612 -16.24255 -15.51118 -15.19168 -14.61231 -14.41555 -14.19596 -14.11499 -13.77197 -13.47192 -13.35999 -13.28071 -13.11132 -12.86401 -12.82809 -12.33841 -12.20663 -12.15159 -11.73904 -11.49210 -11.14380 -10.87349 -10.45836 -10.25422 -8.86367 -8.25753 -8.05337 -6.21233 0.34548 0.88147 1.39536 1.41004 1.53459 1.90701 2.07581 2.44000 3.10015 3.20161 3.88615 3.97073 4.06877 4.19958 4.26053 4.41814 4.58239 4.67965 4.70717 4.78125 4.80871 4.87933 4.94054 5.00808 5.13820 5.15578 5.20675 5.32523 5.43138 5.55393 5.73062 5.73381 5.94009 5.97571 6.09508 6.20586 6.42765 6.48757 6.61489 6.86957 7.45953 8.96871 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031523 B = 0.006182 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.018527 B = 4528.443772 C = 4841.862092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C -0.126 4.126 4 C -0.080 4.080 5 C 0.076 3.924 6 H 0.004 0.996 7 C -0.119 4.119 8 C -0.518 4.518 9 H 0.045 0.955 10 C 0.013 3.987 11 N -0.918 5.918 12 Si 0.954 3.046 13 H -0.272 1.272 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.095 4.095 17 C -0.130 4.130 18 C -0.243 4.243 19 C 0.067 3.933 20 N -0.489 5.489 21 C 0.065 3.935 22 C 0.066 3.934 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.212 0.788 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 -16.455 -1.556 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.081 4.081 5 C 0.058 3.942 6 H 0.022 0.978 7 C -0.177 4.177 8 C -0.556 4.556 9 H 0.063 0.937 10 C -0.185 4.185 11 N -0.557 5.557 12 Si 0.780 3.220 13 H -0.197 1.197 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.114 4.114 17 C -0.135 4.135 18 C -0.268 4.268 19 C -0.059 4.059 20 N -0.173 5.173 21 C -0.075 4.075 22 C -0.039 4.039 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.138 0.862 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.169 0.831 33 H 0.229 0.771 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.810 -16.430 -1.586 20.296 hybrid contribution 1.115 0.785 0.664 1.517 sum -10.695 -15.644 -0.923 18.973 Atomic orbital electron populations 1.20945 0.88808 1.03684 1.02935 1.19090 0.97018 0.89317 1.04671 1.20820 0.93345 0.97158 1.03201 1.19874 0.93899 0.95870 0.98418 1.17676 0.93265 0.89101 0.94208 0.97767 1.21613 0.98893 1.01272 0.95893 1.21427 1.25059 1.02487 1.06593 0.93681 1.25716 0.98134 0.95343 0.99319 1.70014 1.41551 1.07452 1.36727 0.85565 0.78719 0.77957 0.79800 1.19693 1.20255 1.20308 1.19994 0.98748 0.90694 1.01987 1.19628 0.93281 0.94332 1.06246 1.21908 0.99555 0.89986 1.15312 1.22349 0.84052 0.97744 1.01755 1.43984 1.07667 1.02654 1.62955 1.22457 0.78419 1.02577 1.04004 1.18098 0.93134 0.85690 1.07001 0.90320 0.89849 0.91053 0.86247 0.92122 0.95454 0.95895 0.92906 0.88298 0.83131 0.77129 0.90413 0.87083 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.53 9.30 71.24 0.66 -1.87 16 2 C -0.10 -3.41 5.89 -19.77 -0.12 -3.53 16 3 C -0.13 -5.28 9.27 22.30 0.21 -5.08 16 4 C -0.08 -3.85 4.72 -20.10 -0.09 -3.94 16 5 C 0.08 4.16 2.47 -12.29 -0.03 4.13 16 6 H 0.00 0.25 7.86 -2.39 -0.02 0.23 16 7 C -0.12 -6.27 8.78 71.98 0.63 -5.64 16 8 C -0.52 -30.40 8.21 25.60 0.21 -30.19 16 9 H 0.04 2.69 7.58 -2.91 -0.02 2.67 16 10 C 0.01 0.76 5.30 84.66 0.45 1.20 16 11 N -0.92 -54.71 11.32 21.44 0.24 -54.47 16 12 Si 0.95 45.55 29.54 68.60 2.03 47.57 16 13 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 16 C -0.10 -4.43 8.66 22.23 0.19 -4.23 16 17 C -0.13 -5.18 6.37 -20.20 -0.13 -5.31 16 18 C -0.24 -7.53 11.08 23.51 0.26 -7.27 16 19 C 0.07 1.54 11.27 83.00 0.94 2.48 16 20 N -0.49 -12.25 3.18 -539.27 -1.71 -13.97 16 21 C 0.07 0.92 10.32 127.77 1.32 2.23 16 22 C 0.07 2.29 6.74 39.03 0.26 2.56 16 23 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.08 1.56 5.08 -2.38 -0.01 1.55 16 25 H 0.07 1.62 8.03 -2.39 -0.02 1.60 16 26 H 0.12 4.76 7.92 -2.91 -0.02 4.74 16 27 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 28 H 0.03 1.38 7.37 -2.39 -0.02 1.36 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.10 4.80 7.53 -2.91 -0.02 4.78 16 32 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 33 H 0.21 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 0.86 8.11 -2.39 -0.02 0.84 16 36 H 0.09 1.18 5.17 -2.39 -0.01 1.16 16 Total: -1.00 -71.56 293.30 6.38 -65.18 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.06 Total: 10.14 kcal Atomic # 6 Polarization: -59.22 SS G_CDS: 4.76 Total: -54.46 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.47 Total: -68.43 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.56 6.38 -65.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260244414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.192 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds