Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36824 * 125.03299 * 2 1 4 4 H 0.97005 * 125.07073 * 359.97438 * 3 2 1 5 5 C 1.37694 * 109.87293 * 179.97438 * 3 2 1 6 6 C 1.39122 * 133.50932 * 180.34679 * 5 3 2 7 7 C 1.37748 * 119.78034 * 180.14108 * 6 5 3 8 8 C 1.50697 * 119.66991 * 179.77088 * 7 6 5 9 9 C 1.52997 * 109.47466 * 269.72907 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.38833 * 120.66363 * 359.49951 * 7 6 5 19 19 C 1.36627 * 120.52697 * 0.22703 * 18 7 6 20 20 C 1.39629 * 119.76471 * 0.02647 * 19 18 7 21 21 C 1.34236 * 125.03311 * 179.97438 * 2 1 3 22 22 C 1.50695 * 126.50335 * 0.02562 * 21 2 1 23 23 H 1.08993 * 109.47612 * 89.96893 * 1 2 3 24 24 H 1.09003 * 109.47084 * 209.97309 * 1 2 3 25 25 H 1.09006 * 109.46717 * 329.96800 * 1 2 3 26 26 H 1.08003 * 120.11230 * 359.89701 * 6 5 3 27 27 H 1.09002 * 109.47120 * 149.72660 * 8 7 6 28 28 H 1.08998 * 109.46862 * 29.73462 * 8 7 6 29 29 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 31 31 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.73430 * 180.25341 * 18 7 6 33 33 H 1.08002 * 120.11752 * 180.02562 * 19 18 7 34 34 H 1.09007 * 109.47144 * 269.99830 * 22 21 2 35 35 H 1.08998 * 109.47322 * 29.99595 * 22 21 2 36 36 H 1.08996 * 109.47470 * 150.00082 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1203 0.0000 4 1 1.9623 2.0325 -0.0004 5 6 3.6215 0.7603 0.0006 6 6 4.8098 1.4836 0.0069 7 6 6.0159 0.8182 0.0026 8 6 7.3016 1.6043 0.0043 9 6 7.7385 1.8706 -1.4376 10 6 9.0239 2.6572 -1.4359 11 1 9.4835 2.9387 -0.4999 12 6 9.6138 3.0167 -2.6291 13 7 9.0544 2.6734 -3.7688 14 14 11.2074 3.9911 -2.6270 15 1 12.2613 3.2149 -1.9254 16 1 11.6314 4.2496 -4.0265 17 1 10.9963 5.2839 -1.9274 18 6 6.0589 -0.5695 0.0024 19 6 4.9041 -1.2996 0.0018 20 6 3.6705 -0.6455 0.0009 21 6 2.2776 -1.0992 0.0005 22 6 1.8003 -2.5285 0.0006 23 1 -0.3634 0.0006 -1.0276 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3633 0.8898 0.5144 26 1 4.7868 2.5634 0.0112 27 1 8.0752 1.0344 0.5190 28 1 7.1467 2.5529 0.5182 29 1 6.9649 2.4404 -1.9523 30 1 7.8934 0.9218 -1.9514 31 1 9.4692 2.9267 -4.6083 32 1 7.0129 -1.0758 0.0032 33 1 4.9453 -2.3788 0.0021 34 1 1.6849 -2.8730 1.0283 35 1 0.8413 -2.5914 -0.5135 36 1 2.5296 -3.1552 -0.5128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260265670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = 25.038744 kcal Electronic energy + Delta-G solvation = -16394.963728 eV Core-core repulsion = 13843.107010 eV Total energy + Delta-G solvation = -2551.856718 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.06132 -37.30227 -33.69318 -33.03131 -31.86586 -30.11410 -29.23078 -27.51095 -26.02361 -24.12830 -21.97098 -21.40141 -19.81253 -18.82786 -17.07508 -16.28125 -15.96999 -14.83806 -14.61492 -14.43287 -13.83331 -13.46271 -13.19925 -12.99994 -12.82073 -12.55582 -12.37463 -12.34467 -12.17784 -11.74537 -11.36656 -11.06086 -10.89745 -10.78412 -10.53383 -10.37228 -9.76974 -9.55741 -9.08499 -8.93856 -8.31326 -7.67867 -7.19084 -5.96089 -3.99227 1.51016 2.07751 2.84362 3.29344 3.35423 3.39703 3.42194 4.34057 4.49427 4.74643 5.00007 5.18133 5.22808 5.34317 5.37326 5.39132 5.57635 5.63291 5.75018 5.76034 5.90979 5.94627 5.98705 6.19375 6.31557 6.40872 6.56720 6.72866 6.93373 7.00465 7.10266 7.13142 7.28262 7.58978 7.72713 7.76900 7.88556 8.04630 8.44811 9.07886 9.64450 11.14856 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.045176 B = 0.004269 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.649044 B = 6557.768591 C = 6763.304408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.062 3.938 3 N -0.596 5.596 4 H 0.410 0.590 5 C 0.103 3.897 6 C -0.138 4.138 7 C -0.034 4.034 8 C -0.078 4.078 9 C 0.030 3.970 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.138 4.138 19 C -0.076 4.076 20 C -0.118 4.118 21 C -0.174 4.174 22 C -0.073 4.073 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.117 0.883 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 -6.886 8.241 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 N -0.200 5.200 4 H 0.246 0.754 5 C -0.003 4.003 6 C -0.158 4.158 7 C -0.035 4.035 8 C -0.115 4.115 9 C -0.007 4.007 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.157 4.157 19 C -0.095 4.095 20 C -0.122 4.122 21 C -0.182 4.182 22 C -0.130 4.130 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.135 0.865 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.391 -6.772 8.044 19.474 hybrid contribution 0.788 1.126 -0.223 1.392 sum -15.604 -5.646 7.820 18.344 Atomic orbital electron populations 1.20397 0.88296 1.03183 1.02726 1.19944 0.92863 0.85771 1.05978 1.41594 1.04190 1.07726 1.66477 0.75350 1.18195 0.84202 0.94088 1.03793 1.19895 0.89076 0.98949 1.07913 1.20015 0.95029 0.93765 0.94690 1.20823 0.91473 0.97552 1.01673 1.19068 0.95844 0.96954 0.88826 1.21240 1.07841 1.34716 0.92294 0.92648 1.25021 0.97541 0.96174 0.95652 1.69968 1.39619 1.46531 0.97255 0.86663 0.83892 0.80555 0.76909 1.20205 1.21316 1.20276 1.20614 0.97874 0.93601 1.03597 1.20152 0.90532 0.98930 0.99858 1.18964 0.92872 0.91977 1.08368 1.19971 0.90911 0.94388 1.12885 1.20053 1.00378 0.91465 1.01139 0.90863 0.90079 0.91703 0.86489 0.92086 0.92395 0.96528 0.96326 0.92968 0.86083 0.86695 0.92324 0.92343 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.99 36.01 0.36 -0.36 16 2 C 0.06 0.77 7.08 -81.77 -0.58 0.19 16 3 N -0.60 -8.08 6.07 -6.96 -0.04 -8.12 16 4 H 0.41 4.35 8.96 -40.82 -0.37 3.99 16 5 C 0.10 1.75 7.28 -83.99 -0.61 1.14 16 6 C -0.14 -2.51 9.71 -39.43 -0.38 -2.89 16 7 C -0.03 -0.66 5.13 -104.58 -0.54 -1.19 16 8 C -0.08 -1.67 5.27 -27.89 -0.15 -1.82 16 9 C 0.03 0.80 4.95 -27.88 -0.14 0.66 16 10 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.14 -2.49 9.62 -39.94 -0.38 -2.87 16 19 C -0.08 -1.26 10.05 -39.64 -0.40 -1.66 16 20 C -0.12 -1.98 6.35 -105.14 -0.67 -2.65 16 21 C -0.17 -2.44 6.31 -102.71 -0.65 -3.09 16 22 C -0.07 -0.77 9.95 36.00 0.36 -0.41 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.55 7.66 -51.93 -0.40 0.16 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.12 2.01 8.06 -52.48 -0.42 1.58 16 27 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 28 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.51 7.69 -51.93 -0.40 0.11 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -32.63 306.01 -9.25 -41.88 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.35 Total: 0.13 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -4.19 Total: -28.69 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.69 Total: -34.76 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.63 -9.25 -41.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260265670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.914 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds