Wall clock time and date at job start Mon Mar 30 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36824 * 125.03299 * 2 1 4 4 H 0.97005 * 125.07073 * 359.97438 * 3 2 1 5 5 C 1.37694 * 109.87293 * 179.97438 * 3 2 1 6 6 C 1.39122 * 133.50932 * 180.34679 * 5 3 2 7 7 C 1.37748 * 119.78034 * 180.14108 * 6 5 3 8 8 C 1.50697 * 119.66991 * 179.77088 * 7 6 5 9 9 C 1.52997 * 109.47466 * 269.72907 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.38833 * 120.66363 * 359.49951 * 7 6 5 19 19 C 1.36627 * 120.52697 * 0.22703 * 18 7 6 20 20 C 1.39629 * 119.76471 * 0.02647 * 19 18 7 21 21 C 1.34236 * 125.03311 * 179.97438 * 2 1 3 22 22 C 1.50695 * 126.50335 * 0.02562 * 21 2 1 23 23 H 1.08993 * 109.47612 * 89.96893 * 1 2 3 24 24 H 1.09003 * 109.47084 * 209.97309 * 1 2 3 25 25 H 1.09006 * 109.46717 * 329.96800 * 1 2 3 26 26 H 1.08003 * 120.11230 * 359.89701 * 6 5 3 27 27 H 1.09002 * 109.47120 * 149.72660 * 8 7 6 28 28 H 1.08998 * 109.46862 * 29.73462 * 8 7 6 29 29 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 31 31 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.73430 * 180.25341 * 18 7 6 33 33 H 1.08002 * 120.11752 * 180.02562 * 19 18 7 34 34 H 1.09007 * 109.47144 * 269.99830 * 22 21 2 35 35 H 1.08998 * 109.47322 * 29.99595 * 22 21 2 36 36 H 1.08996 * 109.47470 * 150.00082 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1203 0.0000 4 1 1.9623 2.0325 -0.0004 5 6 3.6215 0.7603 0.0006 6 6 4.8098 1.4836 0.0069 7 6 6.0159 0.8182 0.0026 8 6 7.3016 1.6043 0.0043 9 6 7.7385 1.8706 -1.4376 10 6 9.0239 2.6572 -1.4359 11 1 9.4835 2.9387 -0.4999 12 6 9.6138 3.0167 -2.6291 13 7 9.0544 2.6734 -3.7688 14 14 11.2074 3.9911 -2.6270 15 1 12.2613 3.2149 -1.9254 16 1 11.6314 4.2496 -4.0265 17 1 10.9963 5.2839 -1.9274 18 6 6.0589 -0.5695 0.0024 19 6 4.9041 -1.2996 0.0018 20 6 3.6705 -0.6455 0.0009 21 6 2.2776 -1.0992 0.0005 22 6 1.8003 -2.5285 0.0006 23 1 -0.3634 0.0006 -1.0276 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3633 0.8898 0.5144 26 1 4.7868 2.5634 0.0112 27 1 8.0752 1.0344 0.5190 28 1 7.1467 2.5529 0.5182 29 1 6.9649 2.4404 -1.9523 30 1 7.8934 0.9218 -1.9514 31 1 9.4692 2.9267 -4.6083 32 1 7.0129 -1.0758 0.0032 33 1 4.9453 -2.3788 0.0021 34 1 1.6849 -2.8730 1.0283 35 1 0.8413 -2.5914 -0.5135 36 1 2.5296 -3.1552 -0.5128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260265670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:02 Heat of formation + Delta-G solvation = 7.092252 kcal Electronic energy + Delta-G solvation = -16395.741946 eV Core-core repulsion = 13843.107010 eV Total energy + Delta-G solvation = -2552.634936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.22233 -38.65975 -35.64908 -34.12326 -33.57436 -31.25275 -30.70111 -28.71597 -27.43877 -25.72438 -23.32457 -23.10108 -21.29868 -19.90292 -18.61155 -18.12233 -17.21696 -16.52952 -16.02874 -15.84140 -15.12884 -14.72809 -14.46883 -14.45203 -13.85009 -13.82711 -13.65818 -13.58101 -13.25380 -13.02016 -12.90711 -12.79134 -12.45174 -12.20012 -12.17442 -11.83622 -11.63793 -11.46346 -11.15885 -10.55564 -10.26017 -8.98706 -8.37719 -8.18377 -6.31966 0.23821 0.71933 1.40117 1.43902 1.51813 1.74247 2.23082 2.41492 2.98412 3.13194 3.77805 3.90415 4.08956 4.23364 4.34276 4.38127 4.52279 4.56422 4.69200 4.79083 4.86905 4.91904 4.96972 5.00283 5.04788 5.12907 5.20167 5.21812 5.36573 5.49114 5.56223 5.66861 5.81024 5.84263 5.95220 5.99257 6.22479 6.30837 6.75013 6.84834 7.37444 8.92295 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.045176 B = 0.004269 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.649044 B = 6557.768591 C = 6763.304408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.074 3.926 3 N -0.590 5.590 4 H 0.423 0.577 5 C 0.083 3.917 6 C -0.144 4.144 7 C -0.063 4.063 8 C -0.062 4.062 9 C 0.038 3.962 10 C -0.546 4.546 11 H 0.064 0.936 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.266 1.266 18 C -0.153 4.153 19 C -0.077 4.077 20 C -0.134 4.134 21 C -0.199 4.199 22 C -0.070 4.070 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.066 0.934 28 H 0.061 0.939 29 H -0.014 1.014 30 H -0.011 1.011 31 H 0.264 0.736 32 H 0.125 0.875 33 H 0.140 0.860 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.830 -7.145 9.074 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 N -0.195 5.195 4 H 0.262 0.738 5 C -0.024 4.024 6 C -0.165 4.165 7 C -0.065 4.065 8 C -0.099 4.099 9 C 0.001 3.999 10 C -0.584 4.584 11 H 0.082 0.918 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.792 3.208 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.173 4.173 19 C -0.095 4.095 20 C -0.138 4.138 21 C -0.206 4.206 22 C -0.127 4.127 23 H 0.105 0.895 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.136 0.864 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.004 0.996 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.903 -7.024 8.897 21.190 hybrid contribution 1.084 1.180 -0.491 1.675 sum -16.819 -5.844 8.406 19.691 Atomic orbital electron populations 1.20574 0.84638 1.05022 1.04134 1.20736 0.94948 0.84750 1.02980 1.41716 1.03106 1.09054 1.65630 0.73832 1.18250 0.85210 0.94465 1.04516 1.19945 0.89584 0.99154 1.07842 1.19874 0.94461 0.94436 0.97693 1.20532 0.92941 0.98295 0.98130 1.18898 0.94664 0.94687 0.91641 1.21696 1.08695 1.35052 0.92920 0.91779 1.26025 1.01547 0.97194 0.95082 1.70119 1.41547 1.47790 0.98031 0.85459 0.78968 0.79147 0.77217 1.18969 1.20846 1.19052 1.20717 0.98844 0.93209 1.04488 1.20411 0.90090 1.00155 0.98861 1.19480 0.94454 0.92264 1.07626 1.20427 0.89521 0.96643 1.13963 1.20114 1.01248 0.89171 1.02190 0.89476 0.88198 0.89966 0.86373 0.91554 0.91991 0.99551 0.99246 0.92776 0.85739 0.84225 0.91158 0.90089 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.99 71.24 0.71 -0.33 16 2 C 0.07 1.65 7.08 40.87 0.29 1.93 16 3 N -0.59 -15.15 6.07 -175.92 -1.07 -16.22 16 4 H 0.42 8.32 8.96 -92.70 -0.83 7.49 16 5 C 0.08 2.80 7.28 39.03 0.28 3.09 16 6 C -0.14 -5.46 9.71 22.37 0.22 -5.24 16 7 C -0.06 -2.58 5.13 -19.84 -0.10 -2.68 16 8 C -0.06 -2.75 5.27 29.85 0.16 -2.60 16 9 C 0.04 2.14 4.95 29.85 0.15 2.29 16 10 C -0.55 -32.08 9.11 25.60 0.23 -31.84 16 11 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 12 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 13 N -0.93 -58.73 13.29 21.45 0.28 -58.44 16 14 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 C -0.15 -5.71 9.62 22.04 0.21 -5.50 16 19 C -0.08 -2.54 10.05 22.23 0.22 -2.32 16 20 C -0.13 -4.42 6.35 -20.20 -0.13 -4.55 16 21 C -0.20 -5.15 6.31 -18.63 -0.12 -5.27 16 22 C -0.07 -1.28 9.95 71.23 0.71 -0.57 16 23 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.10 0.89 7.66 -2.39 -0.02 0.88 16 25 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 27 H 0.07 2.82 8.08 -2.39 -0.02 2.81 16 28 H 0.06 2.65 8.07 -2.39 -0.02 2.63 16 29 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 33 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.08 1.10 7.69 -2.39 -0.02 1.08 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -72.16 306.01 4.78 -67.38 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.23 Total: 13.38 kcal Atomic # 6 Polarization: -56.49 SS G_CDS: 3.30 Total: -53.19 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -0.78 Total: -74.66 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.16 4.78 -67.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260265670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.474 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds