Wall clock time and date at job start Mon Mar 30 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47314 * 2 1 4 4 C 1.38832 * 119.66420 * 89.99537 * 3 2 1 5 5 C 1.36629 * 120.52376 * 179.69904 * 4 3 2 6 6 C 1.39624 * 119.76794 * 0.28388 * 5 4 3 7 7 C 1.46486 * 134.03497 * 179.97438 * 6 5 4 8 8 C 1.34240 * 106.99879 * 180.02562 * 7 6 5 9 9 C 1.50702 * 125.03498 * 180.02562 * 8 7 6 10 10 H 1.08991 * 109.47165 * 154.99714 * 9 8 7 11 11 C 1.53005 * 109.46967 * 275.00018 * 9 8 7 12 12 C 1.50702 * 109.47132 * 34.99454 * 9 8 7 13 13 H 1.08006 * 119.99705 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00095 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99990 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 120.00206 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46887 * 89.99930 * 16 14 12 18 18 H 1.48501 * 109.46896 * 210.00124 * 16 14 12 19 19 H 1.48502 * 109.47010 * 329.99947 * 16 14 12 20 20 N 1.36829 * 109.93090 * 359.97438 * 8 7 6 21 21 H 0.96993 * 125.06240 * 180.02562 * 20 8 7 22 22 C 1.37689 * 109.87101 * 0.02562 * 20 8 7 23 23 C 1.37747 * 119.66804 * 270.24146 * 3 2 1 24 24 H 1.09007 * 109.47245 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47349 * 300.00209 * 1 2 3 26 26 H 1.08998 * 109.47040 * 60.00094 * 1 2 3 27 27 H 1.08999 * 109.47349 * 239.99791 * 2 1 3 28 28 H 1.09007 * 109.46779 * 119.99904 * 2 1 3 29 29 H 1.08002 * 119.74071 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.11783 * 180.29478 * 5 4 3 31 31 H 1.08004 * 126.49717 * 359.97438 * 7 6 5 32 32 H 1.09000 * 109.46383 * 299.99883 * 11 9 8 33 33 H 1.08998 * 109.47157 * 59.99570 * 11 9 8 34 34 H 1.08997 * 109.46794 * 179.97438 * 11 9 8 35 35 H 0.97000 * 120.00411 * 179.97438 * 15 14 12 36 36 H 1.08006 * 120.11087 * 0.03118 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2613 2.0686 1.2064 5 6 2.7226 3.3545 1.2269 6 6 2.9601 4.0250 0.0254 7 6 3.4400 5.3667 -0.3142 8 6 3.4652 5.4470 -1.6540 9 6 3.8976 6.6578 -2.4401 10 1 4.2447 6.3465 -3.4253 11 6 2.7138 7.6146 -2.5953 12 6 5.0162 7.3569 -1.7112 13 1 5.3780 6.9634 -0.7727 14 6 5.5775 8.4987 -2.2423 15 7 5.1365 8.9780 -3.3848 16 14 6.9645 9.3648 -1.3391 17 1 8.2681 8.8136 -1.7887 18 1 6.9141 10.8195 -1.6332 19 1 6.8136 9.1498 0.1225 20 7 3.0413 4.2662 -2.2001 21 1 2.9741 4.0842 -3.1504 22 6 2.7244 3.3749 -1.1996 23 6 2.2549 2.0653 -1.1969 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.0776 1.5505 2.1360 30 1 2.9029 3.8506 2.1691 31 1 3.7196 6.1441 0.3814 32 1 1.9048 7.1089 -3.1225 33 1 2.3667 7.9259 -1.6101 34 1 3.0266 8.4905 -3.1635 35 1 5.5312 9.7815 -3.7583 36 1 2.0695 1.5542 -2.1301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260305228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:10 Heat of formation + Delta-G solvation = 29.887670 kcal Electronic energy + Delta-G solvation = -16677.334795 eV Core-core repulsion = 14125.688343 eV Total energy + Delta-G solvation = -2551.646452 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67023 -37.37741 -34.31803 -33.11081 -31.25976 -30.13024 -28.82109 -27.03873 -25.18206 -23.44869 -22.41376 -21.06915 -20.24515 -19.06880 -16.92876 -16.19880 -15.51625 -14.98512 -14.58303 -14.14605 -13.78650 -13.47698 -13.25860 -13.15992 -12.80149 -12.35887 -12.22873 -11.77252 -11.39092 -11.17615 -11.10275 -10.95345 -10.92155 -10.68165 -10.41163 -10.35886 -10.13651 -9.77538 -9.07704 -8.98115 -8.45495 -7.54378 -6.92694 -6.09392 -4.15255 1.62794 2.08222 3.28170 3.34779 3.38374 3.56269 3.76947 4.34931 4.40018 4.95478 5.02925 5.23454 5.28125 5.41054 5.45403 5.61820 5.73155 5.79639 5.87929 5.89498 6.08158 6.19024 6.27815 6.41508 6.56099 6.70181 6.73748 6.89861 6.98489 7.05138 7.06423 7.31358 7.41955 7.64764 7.75452 7.85726 8.01419 8.20568 8.36145 8.87159 9.50033 10.97442 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.045750 B = 0.004955 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.872611 B = 5649.579983 C = 5991.333312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.084 4.084 4 C -0.151 4.151 5 C -0.077 4.077 6 C -0.102 4.102 7 C -0.217 4.217 8 C 0.135 3.865 9 C 0.094 3.906 10 H 0.034 0.966 11 C -0.130 4.130 12 C -0.507 4.507 13 H 0.065 0.935 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.272 1.272 20 N -0.599 5.599 21 H 0.408 0.592 22 C 0.087 3.913 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.007 0.993 33 H 0.034 0.966 34 H 0.090 0.910 35 H 0.262 0.738 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 -12.788 4.536 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.085 4.085 4 C -0.171 4.171 5 C -0.095 4.095 6 C -0.108 4.108 7 C -0.241 4.241 8 C 0.027 3.973 9 C 0.075 3.925 10 H 0.052 0.948 11 C -0.188 4.188 12 C -0.545 4.545 13 H 0.084 0.916 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 N -0.201 5.201 21 H 0.244 0.756 22 C -0.021 4.021 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.161 0.839 32 H 0.026 0.974 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.646 -12.618 4.290 14.893 hybrid contribution 0.748 0.444 -0.082 0.874 sum -5.898 -12.174 4.208 14.167 Atomic orbital electron populations 1.21750 0.95245 1.01048 1.02240 1.20431 0.95755 0.93072 1.02165 1.19299 1.01216 0.95608 0.92396 1.20321 1.04735 0.95247 0.96760 1.20194 0.98838 0.94144 0.96330 1.19411 1.03851 0.95363 0.92128 1.21392 1.12688 0.95635 0.94346 1.21521 0.94837 0.86923 0.93993 1.17627 0.94327 0.86169 0.94407 0.94756 1.21773 0.95222 1.01708 1.00115 1.21103 1.16476 1.09523 1.07441 0.91641 1.24949 0.97063 0.96991 0.94979 1.69874 1.41916 1.22832 1.18438 0.86493 0.82156 0.78597 0.80228 1.20665 1.21197 1.19672 1.42029 1.58718 1.11841 1.07548 0.75631 1.18232 1.03078 0.92086 0.88684 1.19731 1.05461 0.91987 0.97629 0.92928 0.92577 0.92709 0.91654 0.91418 0.86989 0.86661 0.83890 0.97395 0.94727 0.89182 0.92829 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.08 -0.83 6.04 -27.89 -0.17 -0.99 16 3 C -0.08 -1.19 5.13 -104.58 -0.54 -1.73 16 4 C -0.15 -2.21 9.62 -39.94 -0.38 -2.59 16 5 C -0.08 -1.27 10.05 -39.65 -0.40 -1.67 16 6 C -0.10 -2.00 6.37 -105.14 -0.67 -2.67 16 7 C -0.22 -4.69 9.89 -37.67 -0.37 -5.06 16 8 C 0.13 2.95 6.02 -81.77 -0.49 2.46 16 9 C 0.09 2.29 2.75 -92.92 -0.26 2.03 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.13 -3.07 8.95 37.16 0.33 -2.73 16 12 C -0.51 -13.49 8.21 -34.44 -0.28 -13.77 16 13 H 0.07 1.74 6.75 -52.48 -0.35 1.39 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.60 11.32 55.43 0.63 -23.98 16 16 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 N -0.60 -11.33 6.07 -6.95 -0.04 -11.37 16 21 H 0.41 6.58 8.96 -40.82 -0.37 6.22 16 22 C 0.09 1.60 7.28 -83.99 -0.61 0.99 16 23 C -0.13 -1.99 9.71 -39.43 -0.38 -2.37 16 24 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.14 3.08 7.57 -52.48 -0.40 2.69 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 300.31 15.07 4.53 4.53 Total: -1.00 -28.29 300.31 -9.07 -37.36 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.21 Total: 5.22 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -3.95 Total: -27.59 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.59 Total: -35.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.29 -9.07 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.245 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds