Wall clock time and date at job start Mon Mar 30 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47314 * 2 1 4 4 C 1.38832 * 119.66420 * 89.99537 * 3 2 1 5 5 C 1.36629 * 120.52376 * 179.69904 * 4 3 2 6 6 C 1.39624 * 119.76794 * 0.28388 * 5 4 3 7 7 C 1.46486 * 134.03497 * 179.97438 * 6 5 4 8 8 C 1.34240 * 106.99879 * 180.02562 * 7 6 5 9 9 C 1.50702 * 125.03498 * 180.02562 * 8 7 6 10 10 H 1.08991 * 109.47165 * 154.99714 * 9 8 7 11 11 C 1.53005 * 109.46967 * 275.00018 * 9 8 7 12 12 C 1.50702 * 109.47132 * 34.99454 * 9 8 7 13 13 H 1.08006 * 119.99705 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00095 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99990 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 120.00206 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46887 * 89.99930 * 16 14 12 18 18 H 1.48501 * 109.46896 * 210.00124 * 16 14 12 19 19 H 1.48502 * 109.47010 * 329.99947 * 16 14 12 20 20 N 1.36829 * 109.93090 * 359.97438 * 8 7 6 21 21 H 0.96993 * 125.06240 * 180.02562 * 20 8 7 22 22 C 1.37689 * 109.87101 * 0.02562 * 20 8 7 23 23 C 1.37747 * 119.66804 * 270.24146 * 3 2 1 24 24 H 1.09007 * 109.47245 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47349 * 300.00209 * 1 2 3 26 26 H 1.08998 * 109.47040 * 60.00094 * 1 2 3 27 27 H 1.08999 * 109.47349 * 239.99791 * 2 1 3 28 28 H 1.09007 * 109.46779 * 119.99904 * 2 1 3 29 29 H 1.08002 * 119.74071 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.11783 * 180.29478 * 5 4 3 31 31 H 1.08004 * 126.49717 * 359.97438 * 7 6 5 32 32 H 1.09000 * 109.46383 * 299.99883 * 11 9 8 33 33 H 1.08998 * 109.47157 * 59.99570 * 11 9 8 34 34 H 1.08997 * 109.46794 * 179.97438 * 11 9 8 35 35 H 0.97000 * 120.00411 * 179.97438 * 15 14 12 36 36 H 1.08006 * 120.11087 * 0.03118 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2613 2.0686 1.2064 5 6 2.7226 3.3545 1.2269 6 6 2.9601 4.0250 0.0254 7 6 3.4400 5.3667 -0.3142 8 6 3.4652 5.4470 -1.6540 9 6 3.8976 6.6578 -2.4401 10 1 4.2447 6.3465 -3.4253 11 6 2.7138 7.6146 -2.5953 12 6 5.0162 7.3569 -1.7112 13 1 5.3780 6.9634 -0.7727 14 6 5.5775 8.4987 -2.2423 15 7 5.1365 8.9780 -3.3848 16 14 6.9645 9.3648 -1.3391 17 1 8.2681 8.8136 -1.7887 18 1 6.9141 10.8195 -1.6332 19 1 6.8136 9.1498 0.1225 20 7 3.0413 4.2662 -2.2001 21 1 2.9741 4.0842 -3.1504 22 6 2.7244 3.3749 -1.1996 23 6 2.2549 2.0653 -1.1969 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.0776 1.5505 2.1360 30 1 2.9029 3.8506 2.1691 31 1 3.7196 6.1441 0.3814 32 1 1.9048 7.1089 -3.1225 33 1 2.3667 7.9259 -1.6101 34 1 3.0266 8.4905 -3.1635 35 1 5.5312 9.7815 -3.7583 36 1 2.0695 1.5542 -2.1301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260305228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:09 Heat of formation + Delta-G solvation = 16.222544 kcal Electronic energy + Delta-G solvation = -16677.927360 eV Core-core repulsion = 14125.688343 eV Total energy + Delta-G solvation = -2552.239017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.09991 -38.65773 -36.13983 -34.25872 -33.01766 -31.58473 -30.18198 -28.39421 -27.19814 -24.75667 -23.65255 -22.64366 -21.53742 -20.64871 -18.43483 -18.05375 -16.98053 -16.53392 -15.96605 -15.47435 -15.15549 -14.82286 -14.71418 -14.34205 -14.20408 -13.89732 -13.52511 -13.45814 -12.91934 -12.85771 -12.69410 -12.41674 -12.19393 -12.16594 -11.87433 -11.77418 -11.66556 -11.46441 -11.02372 -10.52483 -10.39050 -8.90028 -8.41221 -8.13942 -6.26632 0.31928 0.80367 1.42722 1.43878 1.54332 1.96763 2.29813 2.48588 3.04747 3.15870 3.87604 4.01790 4.11604 4.29276 4.43068 4.58227 4.61070 4.64561 4.70352 4.77627 4.79656 5.02011 5.07277 5.12160 5.16953 5.18816 5.25977 5.29767 5.46938 5.48706 5.68038 5.71852 5.82458 5.91770 6.02944 6.10508 6.27594 6.46445 6.79009 6.82943 7.41646 8.91698 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.045750 B = 0.004955 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.872611 B = 5649.579983 C = 5991.333312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.076 4.076 3 C -0.072 4.072 4 C -0.145 4.145 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.230 4.230 8 C 0.113 3.887 9 C 0.096 3.904 10 H 0.013 0.987 11 C -0.119 4.119 12 C -0.523 4.523 13 H 0.058 0.942 14 C 0.017 3.983 15 N -0.916 5.916 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.281 1.281 19 H -0.269 1.269 20 N -0.595 5.595 21 H 0.418 0.582 22 C 0.076 3.924 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.026 0.974 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.264 0.736 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 -15.201 5.708 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.074 4.074 4 C -0.164 4.164 5 C -0.105 4.105 6 C -0.140 4.140 7 C -0.254 4.254 8 C 0.005 3.995 9 C 0.077 3.923 10 H 0.031 0.969 11 C -0.177 4.177 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.182 4.182 15 N -0.556 5.556 16 Si 0.783 3.217 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.193 1.193 20 N -0.199 5.199 21 H 0.255 0.745 22 C -0.031 4.031 23 C -0.157 4.157 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.163 0.837 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.268 -15.049 5.456 17.580 hybrid contribution 0.868 1.037 -0.380 1.405 sum -6.400 -14.012 5.076 16.219 Atomic orbital electron populations 1.21738 0.94291 1.02354 1.01755 1.20530 0.96400 0.90633 1.03726 1.19833 0.98712 0.97178 0.91636 1.20746 1.02855 0.94366 0.98451 1.20474 0.98988 0.95131 0.95948 1.19578 1.05748 0.94734 0.93919 1.21414 1.13044 0.96773 0.94218 1.21040 0.97077 0.87435 0.93994 1.17426 0.94053 0.87405 0.93412 0.96888 1.21601 0.95587 1.00879 0.99602 1.21358 1.17376 1.10023 1.07388 0.92411 1.25673 0.99199 0.97609 0.95707 1.69983 1.42920 1.23167 1.19489 0.85559 0.79386 0.77616 0.79162 1.20266 1.20619 1.19327 1.41870 1.58628 1.11104 1.08265 0.74491 1.18590 1.03422 0.93040 0.88013 1.20082 1.05233 0.90885 0.99459 0.90802 0.92816 0.93505 0.90478 0.89601 0.83694 0.85347 0.85201 0.95504 0.95168 0.91368 0.92729 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 71.98 0.71 -1.51 16 2 C -0.08 -1.29 6.04 29.85 0.18 -1.11 16 3 C -0.07 -1.80 5.13 -19.84 -0.10 -1.91 16 4 C -0.15 -3.76 9.62 22.04 0.21 -3.55 16 5 C -0.09 -2.77 10.05 22.23 0.22 -2.54 16 6 C -0.13 -5.26 6.37 -20.20 -0.13 -5.39 16 7 C -0.23 -10.28 9.89 23.51 0.23 -10.05 16 8 C 0.11 5.09 6.02 40.87 0.25 5.34 16 9 C 0.10 4.88 2.75 -12.28 -0.03 4.85 16 10 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 11 C -0.12 -5.77 8.95 71.98 0.64 -5.13 16 12 C -0.52 -28.75 8.21 25.60 0.21 -28.54 16 13 H 0.06 3.19 6.75 -2.91 -0.02 3.17 16 14 C 0.02 0.93 5.30 84.65 0.45 1.38 16 15 N -0.92 -51.70 11.32 21.44 0.24 -51.45 16 16 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 N -0.60 -22.78 6.07 -175.90 -1.07 -23.84 16 21 H 0.42 13.63 8.96 -92.71 -0.83 12.80 16 22 C 0.08 2.77 7.28 39.03 0.28 3.05 16 23 C -0.14 -3.93 9.71 22.37 0.22 -3.71 16 24 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 1.18 8.08 -2.39 -0.02 1.17 16 28 H 0.09 1.21 8.08 -2.38 -0.02 1.19 16 29 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.13 5.92 7.57 -2.91 -0.02 5.90 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 35 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -61.66 300.31 4.79 -56.88 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.24 Total: 21.82 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 3.35 Total: -48.80 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -0.83 Total: -75.30 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -61.66 4.79 -56.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.098 kcal (2) G-P(sol) polarization free energy of solvation -61.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds