Wall clock time and date at job start Mon Mar 30 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47031 * 2 1 4 4 C 1.38830 * 119.66463 * 270.01869 * 3 2 1 5 5 C 1.36630 * 120.53110 * 179.97438 * 4 3 2 6 6 C 1.39631 * 119.76129 * 0.02787 * 5 4 3 7 7 C 1.46479 * 134.03299 * 179.97438 * 6 5 4 8 8 C 1.34236 * 106.99923 * 180.02562 * 7 6 5 9 9 C 1.50706 * 125.03327 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.46953 * 205.02102 * 9 8 7 11 11 C 1.52997 * 109.47238 * 85.02490 * 9 8 7 12 12 C 1.50697 * 109.47178 * 325.01964 * 9 8 7 13 13 H 1.07998 * 120.00039 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99815 * 180.02562 * 12 9 8 15 15 N 1.31508 * 119.99915 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99777 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.46998 * 89.99974 * 16 14 12 18 18 H 1.48499 * 109.47094 * 209.99977 * 16 14 12 19 19 H 1.48498 * 109.47121 * 330.00074 * 16 14 12 20 20 N 1.36829 * 109.93325 * 0.26343 * 8 7 6 21 21 H 0.96999 * 125.06638 * 179.73845 * 20 8 7 22 22 C 1.37690 * 109.86711 * 359.55676 * 20 8 7 23 23 C 1.37746 * 119.66889 * 89.99822 * 3 2 1 24 24 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47290 * 300.00265 * 1 2 3 26 26 H 1.08995 * 109.47252 * 60.00558 * 1 2 3 27 27 H 1.08992 * 109.47366 * 239.99420 * 2 1 3 28 28 H 1.09004 * 109.46691 * 119.99365 * 2 1 3 29 29 H 1.08007 * 119.73546 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.11881 * 179.97438 * 5 4 3 31 31 H 1.08003 * 126.49935 * 0.02562 * 7 6 5 32 32 H 1.09004 * 109.47261 * 59.99705 * 11 9 8 33 33 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.46832 * 299.99686 * 11 9 8 35 35 H 0.97001 * 119.99839 * 179.97438 * 15 14 12 36 36 H 1.07995 * 120.11240 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2610 2.0688 -1.2063 5 6 2.7158 3.3570 -1.2270 6 6 2.9534 4.0275 -0.0255 7 6 3.4284 5.3709 0.3141 8 6 3.4575 5.4498 1.6538 9 6 3.8860 6.6621 2.4399 10 1 4.2382 6.3515 3.4236 11 6 2.6975 7.6122 2.6004 12 6 4.9982 7.3680 1.7080 13 1 5.3585 6.9781 0.7675 14 6 5.5559 8.5117 2.2392 15 7 5.1176 8.9862 3.3846 16 14 6.9342 9.3871 1.3316 17 1 6.3560 10.3962 0.4081 18 1 7.8209 10.0637 2.3119 19 1 7.7212 8.3972 0.5531 20 7 3.0454 4.2649 2.2000 21 1 2.9860 4.0801 3.1504 22 6 2.7238 3.3752 1.1995 23 6 2.2596 2.0637 1.1969 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 2.0778 1.5504 -2.1360 30 1 2.8918 3.8545 -2.1692 31 1 3.7032 6.1500 -0.3815 32 1 1.8930 7.1016 3.1298 33 1 3.0074 8.4888 3.1693 34 1 2.3454 7.9229 1.6167 35 1 5.5102 9.7906 3.7585 36 1 2.0780 1.5514 2.1301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260305234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:12 Heat of formation + Delta-G solvation = 29.868319 kcal Electronic energy + Delta-G solvation = -16677.226279 eV Core-core repulsion = 14125.578987 eV Total energy + Delta-G solvation = -2551.647292 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67023 -37.37700 -34.31775 -33.11013 -31.26073 -30.13177 -28.82121 -27.03998 -25.18167 -23.44798 -22.41451 -21.06795 -20.24545 -19.06949 -16.92771 -16.19861 -15.51757 -14.98532 -14.58335 -14.14678 -13.78557 -13.47895 -13.25966 -13.16145 -12.80252 -12.35593 -12.22998 -11.77272 -11.39219 -11.17516 -11.09883 -10.95273 -10.92478 -10.67230 -10.41039 -10.36833 -10.13853 -9.77976 -9.07319 -8.98085 -8.45663 -7.54377 -6.92719 -6.09443 -4.15247 1.62789 2.08233 3.28094 3.34744 3.38524 3.56247 3.76944 4.34899 4.40058 4.95509 5.02944 5.23414 5.28139 5.41007 5.45423 5.61803 5.73177 5.79658 5.87942 5.89505 6.08119 6.19025 6.27809 6.41466 6.56077 6.70104 6.73609 6.89766 6.98482 7.05080 7.06442 7.31308 7.41878 7.64744 7.75351 7.85762 8.01314 8.20526 8.36129 8.87184 9.50010 10.97417 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.045769 B = 0.004955 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.620424 B = 5649.477187 C = 5991.426382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.084 4.084 4 C -0.151 4.151 5 C -0.077 4.077 6 C -0.102 4.102 7 C -0.217 4.217 8 C 0.135 3.865 9 C 0.094 3.906 10 H 0.035 0.965 11 C -0.130 4.130 12 C -0.507 4.507 13 H 0.065 0.935 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.273 1.273 20 N -0.599 5.599 21 H 0.408 0.592 22 C 0.086 3.914 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.007 0.993 33 H 0.089 0.911 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.634 -12.813 -4.525 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.085 4.085 4 C -0.171 4.171 5 C -0.095 4.095 6 C -0.107 4.107 7 C -0.241 4.241 8 C 0.027 3.973 9 C 0.075 3.925 10 H 0.053 0.947 11 C -0.188 4.188 12 C -0.546 4.546 13 H 0.084 0.916 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.197 1.197 20 N -0.201 5.201 21 H 0.244 0.756 22 C -0.021 4.021 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.161 0.839 32 H 0.026 0.974 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.592 -12.649 -4.275 14.891 hybrid contribution 0.729 0.461 0.069 0.865 sum -5.863 -12.188 -4.206 14.164 Atomic orbital electron populations 1.21750 0.95244 1.01048 1.02239 1.20430 0.95757 0.93069 1.02164 1.19299 1.01197 0.95632 0.92396 1.20322 1.04762 0.95217 0.96761 1.20194 0.98873 0.94115 0.96328 1.19411 1.03857 0.95350 0.92128 1.21388 1.12760 0.95582 0.94344 1.21521 0.94914 0.86837 0.93995 1.17627 0.94324 0.86159 0.94417 0.94745 1.21774 0.95236 1.01707 1.00097 1.21102 1.16892 1.09338 1.07219 0.91641 1.24950 0.97045 0.97030 0.94955 1.69874 1.42140 1.22804 1.18232 0.86495 0.81807 0.79743 0.79453 1.20528 1.21238 1.19743 1.42031 1.58899 1.11652 1.07552 0.75628 1.18234 1.03080 0.92089 0.88685 1.19730 1.05488 0.91957 0.97627 0.92928 0.92708 0.92578 0.91418 0.91658 0.86991 0.86659 0.83893 0.97398 0.89198 0.94726 0.92830 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.08 -0.83 6.05 -27.88 -0.17 -0.99 16 3 C -0.08 -1.19 5.13 -104.58 -0.54 -1.73 16 4 C -0.15 -2.21 9.61 -39.94 -0.38 -2.59 16 5 C -0.08 -1.27 10.05 -39.64 -0.40 -1.67 16 6 C -0.10 -1.99 6.37 -105.14 -0.67 -2.67 16 7 C -0.22 -4.69 9.90 -37.67 -0.37 -5.06 16 8 C 0.13 2.95 6.02 -81.77 -0.49 2.46 16 9 C 0.09 2.29 2.75 -92.92 -0.26 2.04 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 11 C -0.13 -3.07 8.95 37.16 0.33 -2.73 16 12 C -0.51 -13.49 8.21 -34.44 -0.28 -13.77 16 13 H 0.07 1.74 6.75 -52.49 -0.35 1.39 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 16 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 N -0.60 -11.33 6.07 -6.95 -0.04 -11.37 16 21 H 0.41 6.58 8.96 -40.82 -0.37 6.22 16 22 C 0.09 1.60 7.28 -83.98 -0.61 0.99 16 23 C -0.13 -1.98 9.71 -39.43 -0.38 -2.37 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.14 3.07 7.56 -52.48 -0.40 2.68 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 300.32 15.07 4.53 4.53 Total: -1.00 -28.30 300.32 -9.07 -37.38 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.21 Total: 5.20 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -3.95 Total: -27.59 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.59 Total: -35.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.30 -9.07 -37.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.244 kcal (2) G-P(sol) polarization free energy of solvation -28.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds