Wall clock time and date at job start Mon Mar 30 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47031 * 2 1 4 4 C 1.38830 * 119.66463 * 270.01869 * 3 2 1 5 5 C 1.36630 * 120.53110 * 179.97438 * 4 3 2 6 6 C 1.39631 * 119.76129 * 0.02787 * 5 4 3 7 7 C 1.46479 * 134.03299 * 179.97438 * 6 5 4 8 8 C 1.34236 * 106.99923 * 180.02562 * 7 6 5 9 9 C 1.50706 * 125.03327 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.46953 * 205.02102 * 9 8 7 11 11 C 1.52997 * 109.47238 * 85.02490 * 9 8 7 12 12 C 1.50697 * 109.47178 * 325.01964 * 9 8 7 13 13 H 1.07998 * 120.00039 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99815 * 180.02562 * 12 9 8 15 15 N 1.31508 * 119.99915 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99777 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.46998 * 89.99974 * 16 14 12 18 18 H 1.48499 * 109.47094 * 209.99977 * 16 14 12 19 19 H 1.48498 * 109.47121 * 330.00074 * 16 14 12 20 20 N 1.36829 * 109.93325 * 0.26343 * 8 7 6 21 21 H 0.96999 * 125.06638 * 179.73845 * 20 8 7 22 22 C 1.37690 * 109.86711 * 359.55676 * 20 8 7 23 23 C 1.37746 * 119.66889 * 89.99822 * 3 2 1 24 24 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47290 * 300.00265 * 1 2 3 26 26 H 1.08995 * 109.47252 * 60.00558 * 1 2 3 27 27 H 1.08992 * 109.47366 * 239.99420 * 2 1 3 28 28 H 1.09004 * 109.46691 * 119.99365 * 2 1 3 29 29 H 1.08007 * 119.73546 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.11881 * 179.97438 * 5 4 3 31 31 H 1.08003 * 126.49935 * 0.02562 * 7 6 5 32 32 H 1.09004 * 109.47261 * 59.99705 * 11 9 8 33 33 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.46832 * 299.99686 * 11 9 8 35 35 H 0.97001 * 119.99839 * 179.97438 * 15 14 12 36 36 H 1.07995 * 120.11240 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2610 2.0688 -1.2063 5 6 2.7158 3.3570 -1.2270 6 6 2.9534 4.0275 -0.0255 7 6 3.4284 5.3709 0.3141 8 6 3.4575 5.4498 1.6538 9 6 3.8860 6.6621 2.4399 10 1 4.2382 6.3515 3.4236 11 6 2.6975 7.6122 2.6004 12 6 4.9982 7.3680 1.7080 13 1 5.3585 6.9781 0.7675 14 6 5.5559 8.5117 2.2392 15 7 5.1176 8.9862 3.3846 16 14 6.9342 9.3871 1.3316 17 1 6.3560 10.3962 0.4081 18 1 7.8209 10.0637 2.3119 19 1 7.7212 8.3972 0.5531 20 7 3.0454 4.2649 2.2000 21 1 2.9860 4.0801 3.1504 22 6 2.7238 3.3752 1.1995 23 6 2.2596 2.0637 1.1969 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 2.0778 1.5504 -2.1360 30 1 2.8918 3.8545 -2.1692 31 1 3.7032 6.1500 -0.3815 32 1 1.8930 7.1016 3.1298 33 1 3.0074 8.4888 3.1693 34 1 2.3454 7.9229 1.6167 35 1 5.5102 9.7906 3.7585 36 1 2.0780 1.5514 2.1301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260305234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:12 Heat of formation + Delta-G solvation = 16.187138 kcal Electronic energy + Delta-G solvation = -16677.819539 eV Core-core repulsion = 14125.578987 eV Total energy + Delta-G solvation = -2552.240552 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.09935 -38.65702 -36.13957 -34.25786 -33.01856 -31.58595 -30.18162 -28.39525 -27.19770 -24.75611 -23.65296 -22.64205 -21.53714 -20.64896 -18.43391 -18.05313 -16.98139 -16.53481 -15.96677 -15.47292 -15.15581 -14.82417 -14.71608 -14.34402 -14.20424 -13.89708 -13.52566 -13.45558 -12.90718 -12.87237 -12.67047 -12.43670 -12.19449 -12.16423 -11.87598 -11.77512 -11.66932 -11.46468 -11.01926 -10.52613 -10.39019 -8.90014 -8.41188 -8.13989 -6.26625 0.31956 0.80403 1.42875 1.43837 1.54130 1.96830 2.29865 2.48579 3.04778 3.15820 3.87644 4.01825 4.11632 4.29288 4.43070 4.58181 4.61098 4.64573 4.70348 4.77626 4.79623 5.01968 5.07244 5.12148 5.16961 5.18827 5.26002 5.29792 5.46919 5.48703 5.67944 5.71854 5.82480 5.91788 6.02948 6.10503 6.27619 6.46456 6.79033 6.82947 7.41623 8.91671 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.045769 B = 0.004955 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.620424 B = 5649.477187 C = 5991.426382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.076 4.076 3 C -0.072 4.072 4 C -0.145 4.145 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.230 4.230 8 C 0.112 3.888 9 C 0.096 3.904 10 H 0.013 0.987 11 C -0.119 4.119 12 C -0.523 4.523 13 H 0.058 0.942 14 C 0.017 3.983 15 N -0.916 5.916 16 Si 0.957 3.043 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.271 1.271 20 N -0.595 5.595 21 H 0.418 0.582 22 C 0.076 3.924 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 -15.209 -5.707 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.074 4.074 4 C -0.164 4.164 5 C -0.105 4.105 6 C -0.140 4.140 7 C -0.255 4.255 8 C 0.004 3.996 9 C 0.077 3.923 10 H 0.031 0.969 11 C -0.177 4.177 12 C -0.562 4.562 13 H 0.076 0.924 14 C -0.182 4.182 15 N -0.555 5.555 16 Si 0.783 3.217 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.196 1.196 20 N -0.199 5.199 21 H 0.255 0.745 22 C -0.031 4.031 23 C -0.157 4.157 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.217 -15.062 -5.450 17.569 hybrid contribution 0.850 1.049 0.369 1.400 sum -6.367 -14.013 -5.081 16.209 Atomic orbital electron populations 1.21738 0.94293 1.02354 1.01752 1.20530 0.96399 0.90632 1.03726 1.19833 0.98692 0.97202 0.91637 1.20747 1.02887 0.94343 0.98450 1.20475 0.99006 0.95105 0.95950 1.19580 1.05765 0.94719 0.93915 1.21417 1.13092 0.96728 0.94220 1.21042 0.97176 0.87341 0.94004 1.17425 0.94047 0.87393 0.93422 0.96882 1.21602 0.95594 1.00883 0.99585 1.21357 1.17783 1.09847 1.07170 0.92414 1.25674 0.99152 0.97666 0.95691 1.69983 1.43135 1.23143 1.19287 0.85557 0.79142 0.78611 0.78394 1.19921 1.20725 1.19586 1.41873 1.58822 1.10909 1.08268 0.74492 1.18592 1.03419 0.93048 0.88019 1.20081 1.05269 0.90857 0.99457 0.90800 0.93509 0.92816 0.89599 0.90480 0.83694 0.85332 0.85151 0.95511 0.91383 0.95167 0.92729 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 71.98 0.71 -1.51 16 2 C -0.08 -1.29 6.05 29.85 0.18 -1.11 16 3 C -0.07 -1.81 5.13 -19.84 -0.10 -1.91 16 4 C -0.15 -3.76 9.61 22.04 0.21 -3.55 16 5 C -0.09 -2.76 10.05 22.23 0.22 -2.54 16 6 C -0.13 -5.26 6.37 -20.20 -0.13 -5.39 16 7 C -0.23 -10.27 9.90 23.50 0.23 -10.04 16 8 C 0.11 5.09 6.02 40.87 0.25 5.33 16 9 C 0.10 4.89 2.75 -12.29 -0.03 4.85 16 10 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 11 C -0.12 -5.77 8.95 71.98 0.64 -5.13 16 12 C -0.52 -28.76 8.21 25.60 0.21 -28.55 16 13 H 0.06 3.19 6.75 -2.91 -0.02 3.17 16 14 C 0.02 0.93 5.30 84.66 0.45 1.38 16 15 N -0.92 -51.69 11.32 21.45 0.24 -51.44 16 16 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 N -0.60 -22.79 6.07 -175.90 -1.07 -23.86 16 21 H 0.42 13.64 8.96 -92.71 -0.83 12.81 16 22 C 0.08 2.77 7.28 39.03 0.28 3.05 16 23 C -0.14 -3.93 9.71 22.37 0.22 -3.71 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 28 H 0.08 1.18 8.08 -2.38 -0.02 1.17 16 29 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.13 5.92 7.56 -2.91 -0.02 5.90 16 32 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -61.69 300.32 4.79 -56.90 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.24 Total: 21.80 kcal Atomic # 6 Polarization: -52.16 SS G_CDS: 3.35 Total: -48.81 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -0.82 Total: -75.30 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -61.69 4.79 -56.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.088 kcal (2) G-P(sol) polarization free energy of solvation -61.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds