Wall clock time and date at job start Mon Mar 30 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46474 * 2 1 4 4 C 1.34233 * 125.02999 * 84.98295 * 3 2 1 5 5 C 1.46485 * 107.00140 * 180.02562 * 4 3 2 6 6 C 1.40703 * 106.03357 * 359.97438 * 5 4 3 7 7 C 1.39083 * 119.33454 * 179.97438 * 6 5 4 8 8 C 1.37795 * 119.77690 * 0.02562 * 7 6 5 9 9 C 1.38789 * 120.66819 * 359.97438 * 8 7 6 10 10 C 1.36668 * 120.52306 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.11466 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47034 * 264.98963 * 11 10 9 13 13 H 1.08006 * 120.00006 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00366 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00377 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99537 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46945 * 90.00179 * 16 14 12 18 18 H 1.48496 * 109.46721 * 210.00128 * 16 14 12 19 19 H 1.48505 * 109.47106 * 330.00044 * 16 14 12 20 20 N 1.36824 * 125.02944 * 264.99581 * 3 2 1 21 21 C 1.46500 * 125.06496 * 359.97438 * 20 3 2 22 22 H 1.09007 * 109.46584 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47241 * 299.99591 * 1 2 3 24 24 H 1.08991 * 109.47544 * 60.00334 * 1 2 3 25 25 H 1.09000 * 109.47241 * 240.00409 * 2 1 3 26 26 H 1.09000 * 109.47253 * 119.99636 * 2 1 3 27 27 H 1.08003 * 126.50283 * 359.97333 * 4 3 2 28 28 H 1.07998 * 120.11656 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.66491 * 179.72033 * 8 7 6 30 30 H 1.08000 * 119.73737 * 179.97438 * 9 8 7 31 31 H 1.09001 * 109.46738 * 24.98650 * 11 10 9 32 32 H 1.08999 * 109.47063 * 144.98649 * 11 10 9 33 33 H 0.97003 * 120.00199 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.47028 * 269.97085 * 21 20 3 35 35 H 1.08998 * 109.47216 * 29.97004 * 21 20 3 36 36 H 1.08998 * 109.47262 * 149.97720 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.1984 2.1794 1.0950 5 6 2.6993 3.4797 0.6433 6 6 2.7992 3.3925 -0.7575 7 6 3.2537 4.4919 -1.4780 8 6 3.6002 5.6490 -0.8148 9 6 3.4999 5.7300 0.5671 10 6 3.0557 4.6618 1.2946 11 6 2.9498 4.7601 2.7947 12 6 4.2028 4.2078 3.4239 13 1 4.9963 3.8236 2.8000 14 6 4.3359 4.1919 4.7962 15 7 5.4292 3.7095 5.3453 16 14 2.9632 4.8558 5.8754 17 1 2.0170 3.7592 6.2031 18 1 3.5403 5.4031 7.1294 19 1 2.2412 5.9328 5.1514 20 7 2.3861 2.1288 -1.1161 21 6 2.3337 1.6183 -2.4883 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.9995 1.8869 2.1154 28 1 3.3349 4.4389 -2.5536 29 1 3.9572 6.5001 -1.3757 30 1 3.7759 6.6442 1.0715 31 1 2.8285 5.8043 3.0827 32 1 2.0883 4.1864 3.1365 33 1 5.5230 3.6987 6.3108 34 1 3.2862 1.1514 -2.7389 35 1 1.5348 0.8815 -2.5716 36 1 2.1412 2.4423 -3.1754 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260314572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:14 Heat of formation + Delta-G solvation = 44.967300 kcal Electronic energy + Delta-G solvation = -17045.802882 eV Core-core repulsion = 14494.810331 eV Total energy + Delta-G solvation = -2550.992551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87751 -37.02295 -33.76455 -32.95635 -32.12134 -30.91269 -28.14543 -27.04979 -25.84591 -23.77266 -22.44519 -21.10905 -19.99731 -18.70749 -16.67655 -16.26169 -15.91164 -15.17834 -14.67926 -14.20500 -14.06243 -13.66782 -13.25021 -13.02346 -12.71128 -12.58744 -12.29536 -12.08877 -11.95385 -11.60714 -11.29855 -11.15027 -11.07857 -10.75883 -10.60050 -10.31351 -9.93872 -9.73388 -9.27879 -8.65125 -8.49219 -7.50304 -6.86647 -5.98638 -3.96127 1.78761 2.32200 3.17837 3.21800 3.34212 3.41603 3.45658 4.49036 4.63221 4.82014 4.87479 5.03759 5.22585 5.30065 5.34716 5.36060 5.42385 5.57777 5.61286 5.75164 5.81554 5.94911 6.04341 6.16995 6.18074 6.28328 6.50406 6.63937 6.75454 7.03434 7.12733 7.14976 7.38361 7.43881 7.74474 7.78010 7.81014 7.89986 8.60330 9.08285 9.62038 11.14587 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.007552 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.451265 B = 3706.911627 C = 4558.235080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C 0.051 3.949 4 C -0.166 4.166 5 C -0.102 4.102 6 C 0.098 3.902 7 C -0.163 4.163 8 C -0.091 4.091 9 C -0.165 4.165 10 C 0.023 3.977 11 C 0.016 3.984 12 C -0.503 4.503 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.902 5.902 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.265 1.265 20 N -0.490 5.490 21 C 0.084 3.916 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.027 0.973 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 -4.444 -14.245 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.053 4.053 4 C -0.191 4.191 5 C -0.107 4.107 6 C -0.007 4.007 7 C -0.184 4.184 8 C -0.110 4.110 9 C -0.184 4.184 10 C 0.023 3.977 11 C -0.022 4.022 12 C -0.541 4.541 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.703 3.297 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 N -0.176 5.176 21 C -0.058 4.058 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.162 0.838 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.947 -4.639 -14.383 17.562 hybrid contribution -0.433 0.277 0.554 0.756 sum -9.380 -4.362 -13.828 17.269 Atomic orbital electron populations 1.21759 0.94683 1.01432 1.02443 1.20134 0.95946 0.90335 1.03141 1.20100 1.04875 0.94653 0.85704 1.21517 1.07388 0.92743 0.97493 1.19009 1.05456 0.94988 0.91210 1.18208 1.02332 0.85885 0.94303 1.19693 1.08438 0.92325 0.97934 1.20683 0.99496 0.96338 0.94524 1.20498 1.05244 0.99450 0.93243 1.19497 0.90977 0.90287 0.96979 1.18778 0.98182 0.97430 0.87769 1.20902 1.01319 1.40190 0.91680 0.90891 1.24974 0.95511 0.94924 0.97841 1.69904 1.26748 1.46574 1.10937 0.86839 0.82742 0.79994 0.80165 1.20228 1.21357 1.18912 1.43526 1.57989 1.10606 1.05519 1.21752 1.02238 1.00205 0.81644 0.92408 0.91885 0.93092 0.91578 0.89491 0.83751 0.87603 0.86717 0.86449 0.95520 0.95792 0.92753 0.92048 0.90617 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.06 -0.69 5.93 -27.88 -0.17 -0.85 16 3 C 0.05 0.84 6.08 -81.77 -0.50 0.34 16 4 C -0.17 -3.31 10.74 -37.67 -0.40 -3.72 16 5 C -0.10 -2.22 6.15 -105.14 -0.65 -2.87 16 6 C 0.10 1.85 6.81 -83.99 -0.57 1.27 16 7 C -0.16 -2.78 9.97 -39.43 -0.39 -3.18 16 8 C -0.09 -1.59 10.01 -39.54 -0.40 -1.99 16 9 C -0.17 -3.36 9.60 -39.95 -0.38 -3.75 16 10 C 0.02 0.53 5.06 -104.69 -0.53 0.00 16 11 C 0.02 0.39 4.09 -29.03 -0.12 0.27 16 12 C -0.50 -14.74 9.65 -34.44 -0.33 -15.07 16 13 H 0.07 2.37 7.98 -52.48 -0.42 1.95 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 16 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 20 N -0.49 -7.85 3.18 -117.20 -0.37 -8.23 16 21 C 0.08 0.91 10.57 59.85 0.63 1.55 16 22 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.67 7.33 -51.93 -0.38 0.29 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.14 2.87 8.06 -52.48 -0.42 2.45 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.12 2.26 8.05 -52.49 -0.42 1.84 16 31 H 0.03 0.66 7.11 -51.93 -0.37 0.29 16 32 H 0.02 0.59 7.47 -51.93 -0.39 0.21 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.66 7.39 -51.93 -0.38 0.28 16 36 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 302.02 15.07 4.55 4.55 Total: -1.00 -33.15 302.02 -8.59 -41.74 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.33 Total: -0.62 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -3.54 Total: -27.21 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.40 Total: -35.64 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.15 -8.59 -41.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.705 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds