Wall clock time and date at job start Mon Mar 30 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46474 * 2 1 4 4 C 1.34233 * 125.02999 * 84.98295 * 3 2 1 5 5 C 1.46485 * 107.00140 * 180.02562 * 4 3 2 6 6 C 1.40703 * 106.03357 * 359.97438 * 5 4 3 7 7 C 1.39083 * 119.33454 * 179.97438 * 6 5 4 8 8 C 1.37795 * 119.77690 * 0.02562 * 7 6 5 9 9 C 1.38789 * 120.66819 * 359.97438 * 8 7 6 10 10 C 1.36668 * 120.52306 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.11466 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47034 * 264.98963 * 11 10 9 13 13 H 1.08006 * 120.00006 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00366 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00377 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99537 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46945 * 90.00179 * 16 14 12 18 18 H 1.48496 * 109.46721 * 210.00128 * 16 14 12 19 19 H 1.48505 * 109.47106 * 330.00044 * 16 14 12 20 20 N 1.36824 * 125.02944 * 264.99581 * 3 2 1 21 21 C 1.46500 * 125.06496 * 359.97438 * 20 3 2 22 22 H 1.09007 * 109.46584 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47241 * 299.99591 * 1 2 3 24 24 H 1.08991 * 109.47544 * 60.00334 * 1 2 3 25 25 H 1.09000 * 109.47241 * 240.00409 * 2 1 3 26 26 H 1.09000 * 109.47253 * 119.99636 * 2 1 3 27 27 H 1.08003 * 126.50283 * 359.97333 * 4 3 2 28 28 H 1.07998 * 120.11656 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.66491 * 179.72033 * 8 7 6 30 30 H 1.08000 * 119.73737 * 179.97438 * 9 8 7 31 31 H 1.09001 * 109.46738 * 24.98650 * 11 10 9 32 32 H 1.08999 * 109.47063 * 144.98649 * 11 10 9 33 33 H 0.97003 * 120.00199 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.47028 * 269.97085 * 21 20 3 35 35 H 1.08998 * 109.47216 * 29.97004 * 21 20 3 36 36 H 1.08998 * 109.47262 * 149.97720 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.1984 2.1794 1.0950 5 6 2.6993 3.4797 0.6433 6 6 2.7992 3.3925 -0.7575 7 6 3.2537 4.4919 -1.4780 8 6 3.6002 5.6490 -0.8148 9 6 3.4999 5.7300 0.5671 10 6 3.0557 4.6618 1.2946 11 6 2.9498 4.7601 2.7947 12 6 4.2028 4.2078 3.4239 13 1 4.9963 3.8236 2.8000 14 6 4.3359 4.1919 4.7962 15 7 5.4292 3.7095 5.3453 16 14 2.9632 4.8558 5.8754 17 1 2.0170 3.7592 6.2031 18 1 3.5403 5.4031 7.1294 19 1 2.2412 5.9328 5.1514 20 7 2.3861 2.1288 -1.1161 21 6 2.3337 1.6183 -2.4883 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.9995 1.8869 2.1154 28 1 3.3349 4.4389 -2.5536 29 1 3.9572 6.5001 -1.3757 30 1 3.7759 6.6442 1.0715 31 1 2.8285 5.8043 3.0827 32 1 2.0883 4.1864 3.1365 33 1 5.5230 3.6987 6.3108 34 1 3.2862 1.1514 -2.7389 35 1 1.5348 0.8815 -2.5716 36 1 2.1412 2.4423 -3.1754 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260314572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:13 Heat of formation + Delta-G solvation = 25.962412 kcal Electronic energy + Delta-G solvation = -17046.626995 eV Core-core repulsion = 14494.810331 eV Total energy + Delta-G solvation = -2551.816664 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.23042 -38.45699 -35.45070 -34.43341 -33.54012 -32.55906 -29.63685 -28.71181 -26.96389 -25.08657 -24.21084 -22.54536 -21.41229 -20.06814 -18.96325 -17.62428 -17.21157 -16.43309 -16.20021 -15.97596 -15.27670 -15.02644 -14.82884 -14.27250 -14.03789 -13.96601 -13.70397 -13.47832 -13.28231 -13.12774 -12.85568 -12.61167 -12.27517 -12.20615 -12.06588 -11.81498 -11.75359 -11.56051 -11.30073 -10.78645 -10.19072 -8.91188 -8.32778 -8.27157 -6.33152 0.34854 0.82636 1.33925 1.35886 1.48662 1.82859 1.98401 2.35037 3.04365 3.10844 3.73313 3.88267 4.02203 4.18736 4.25853 4.36087 4.41119 4.49986 4.60503 4.64599 4.69195 4.71550 4.85067 4.94800 4.98106 5.01625 5.07784 5.19323 5.27697 5.35686 5.37832 5.57403 5.67343 5.89116 5.99545 6.13526 6.27801 6.42837 6.58203 6.71406 7.29010 8.87726 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.007552 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.451265 B = 3706.911627 C = 4558.235080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C 0.083 3.917 4 C -0.229 4.229 5 C -0.135 4.135 6 C 0.081 3.919 7 C -0.146 4.146 8 C -0.096 4.096 9 C -0.174 4.174 10 C -0.027 4.027 11 C 0.027 3.973 12 C -0.509 4.509 13 H 0.021 0.979 14 C 0.009 3.991 15 N -0.950 5.950 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.248 1.248 20 N -0.485 5.485 21 C 0.072 3.928 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.118 0.882 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.267 0.733 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.759 -4.896 -16.990 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 C -0.025 4.025 4 C -0.254 4.254 5 C -0.140 4.140 6 C -0.025 4.025 7 C -0.166 4.166 8 C -0.115 4.115 9 C -0.193 4.193 10 C -0.028 4.028 11 C -0.010 4.010 12 C -0.547 4.547 13 H 0.039 0.961 14 C -0.188 4.188 15 N -0.591 5.591 16 Si 0.773 3.227 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.172 1.172 20 N -0.170 5.170 21 C -0.067 4.067 22 H 0.104 0.896 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.141 0.859 28 H 0.166 0.834 29 H 0.172 0.828 30 H 0.136 0.864 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.702 -5.092 -17.173 20.865 hybrid contribution 0.176 0.301 1.248 1.295 sum -10.527 -4.790 -15.925 19.682 Atomic orbital electron populations 1.21714 0.93040 1.03081 1.01913 1.20328 0.97191 0.87414 1.04588 1.20660 1.01140 0.95784 0.84876 1.21513 1.11943 0.93876 0.98080 1.19339 1.06131 0.95145 0.93338 1.18483 1.02950 0.87725 0.93341 1.20185 1.05527 0.91016 0.99899 1.21056 0.99139 0.98029 0.93245 1.20703 1.04830 0.98758 0.95047 1.19460 0.95094 0.92491 0.95747 1.18545 0.95682 0.96682 0.90080 1.21045 1.01777 1.40186 0.91730 0.96086 1.25949 0.98411 0.95081 0.99355 1.70059 1.29212 1.48161 1.11620 0.85665 0.79206 0.79914 0.77962 1.19057 1.20329 1.17210 1.43881 1.56197 1.09471 1.07418 1.22195 1.04192 1.01680 0.78682 0.89647 0.93653 0.92442 0.88562 0.89595 0.85860 0.83356 0.82787 0.86418 0.95333 0.96190 0.92363 0.90611 0.87833 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.89 71.98 0.71 -1.82 16 2 C -0.06 -1.24 5.93 29.85 0.18 -1.06 16 3 C 0.08 2.64 6.08 40.87 0.25 2.89 16 4 C -0.23 -9.62 10.74 23.51 0.25 -9.37 16 5 C -0.14 -6.10 6.15 -20.20 -0.12 -6.22 16 6 C 0.08 2.98 6.81 39.03 0.27 3.24 16 7 C -0.15 -4.58 9.97 22.37 0.22 -4.36 16 8 C -0.10 -3.16 10.01 22.30 0.22 -2.94 16 9 C -0.17 -7.24 9.60 22.03 0.21 -7.03 16 10 C -0.03 -1.32 5.06 -19.91 -0.10 -1.42 16 11 C 0.03 1.45 4.09 29.10 0.12 1.57 16 12 C -0.51 -31.85 9.65 25.60 0.25 -31.60 16 13 H 0.02 1.47 7.98 -2.91 -0.02 1.45 16 14 C 0.01 0.53 5.47 84.66 0.46 0.99 16 15 N -0.95 -61.99 13.96 21.45 0.30 -61.69 16 16 Si 0.95 46.36 27.47 68.60 1.88 48.25 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 20 N -0.49 -14.43 3.18 -524.69 -1.67 -16.10 16 21 C 0.07 1.25 10.57 127.77 1.35 2.59 16 22 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 1.54 7.33 -2.39 -0.02 1.52 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 27 H 0.12 5.44 8.06 -2.91 -0.02 5.42 16 28 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 29 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.12 4.67 8.05 -2.91 -0.02 4.65 16 31 H 0.03 1.46 7.11 -2.39 -0.02 1.44 16 32 H 0.02 1.05 7.47 -2.39 -0.02 1.03 16 33 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.24 7.39 -2.39 -0.02 1.22 16 36 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 Total: -1.00 -78.12 302.02 5.77 -72.34 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.99 Total: 11.74 kcal Atomic # 6 Polarization: -58.80 SS G_CDS: 4.27 Total: -54.54 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -1.37 Total: -77.79 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.88 Total: 48.25 kcal Total: -78.12 5.77 -72.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.304 kcal (2) G-P(sol) polarization free energy of solvation -78.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds