Wall clock time and date at job start Mon Mar 30 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47613 * 2 1 4 4 C 1.38834 * 119.66535 * 90.00052 * 3 2 1 5 5 C 1.36625 * 120.52656 * 180.02562 * 4 3 2 6 6 C 1.39630 * 119.76695 * 359.97438 * 5 4 3 7 7 C 1.40672 * 119.92520 * 0.28583 * 6 5 4 8 8 C 1.37744 * 119.66667 * 269.98119 * 3 2 1 9 9 N 1.37687 * 107.15867 * 180.19822 * 7 6 5 10 10 H 0.97001 * 125.06642 * 179.84601 * 9 7 6 11 11 C 1.36831 * 109.87412 * 359.57407 * 9 7 6 12 12 C 1.34247 * 109.92819 * 0.26491 * 11 9 7 13 13 C 1.50700 * 126.50141 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.47410 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47176 * 300.03384 * 13 12 11 16 16 C 1.50705 * 109.46987 * 60.02820 * 13 12 11 17 17 H 1.08002 * 119.99846 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99997 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00132 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99705 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47335 * 60.00050 * 20 18 16 22 22 H 1.48504 * 109.46797 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47083 * 299.99550 * 20 18 16 24 24 H 1.09004 * 109.46870 * 300.00266 * 1 2 3 25 25 H 1.08996 * 109.47221 * 59.99679 * 1 2 3 26 26 H 1.08994 * 109.47593 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46870 * 239.99734 * 2 1 3 28 28 H 1.09001 * 109.46942 * 120.00705 * 2 1 3 29 29 H 1.07995 * 119.73350 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.11660 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.11487 * 0.02562 * 8 3 2 32 32 H 1.07994 * 125.03972 * 180.28974 * 11 9 7 33 33 H 1.09003 * 109.46711 * 299.99438 * 15 13 12 34 34 H 1.09000 * 109.47705 * 59.99797 * 15 13 12 35 35 H 1.09001 * 109.46832 * 180.02562 * 15 13 12 36 36 H 0.96998 * 119.99897 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2616 2.0686 1.2064 5 6 2.7165 3.3567 1.2269 6 6 2.9537 4.0273 0.0254 7 6 2.7179 3.3772 -1.1996 8 6 2.2601 2.0634 -1.1969 9 7 3.0389 4.2670 -2.2001 10 1 2.9743 4.0840 -3.1505 11 6 3.4567 5.4500 -1.6541 12 6 3.4283 5.3709 -0.3142 13 6 3.8127 6.4578 0.6563 14 1 3.6849 6.0959 1.6764 15 6 5.2752 6.8474 0.4327 16 6 2.9330 7.6615 0.4365 17 1 2.1715 7.6413 -0.3291 18 6 3.0996 8.7883 1.2136 19 7 4.0258 8.8124 2.1468 20 14 2.0087 10.2801 0.9415 21 1 0.5892 9.9015 1.1583 22 1 2.3866 11.3507 1.8987 23 1 2.1827 10.7737 -0.4482 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 2.0779 1.5504 2.1359 30 1 2.8921 3.8544 2.1692 31 1 2.0788 1.5510 -2.1301 32 1 3.7634 6.3189 -2.2174 33 1 5.9115 5.9768 0.5917 34 1 5.4030 7.2095 -0.5874 35 1 5.5533 7.6333 1.1350 36 1 4.1433 9.6052 2.6932 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260315919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:41 Heat of formation + Delta-G solvation = 34.026671 kcal Electronic energy + Delta-G solvation = -16846.200293 eV Core-core repulsion = 14294.733322 eV Total energy + Delta-G solvation = -2551.466972 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61958 -37.19235 -34.36913 -33.11934 -31.44974 -29.68315 -28.46847 -26.99771 -25.02327 -23.37510 -22.19818 -21.73610 -20.11711 -18.23315 -17.15898 -16.07471 -15.54387 -15.02738 -14.49969 -14.19624 -13.85786 -13.38976 -13.18570 -13.02667 -12.64038 -12.40752 -12.21533 -11.64184 -11.23822 -11.11549 -10.92181 -10.87324 -10.83709 -10.73411 -10.50294 -10.24659 -9.96509 -9.39916 -9.06238 -8.64768 -8.29172 -7.56697 -6.81719 -5.92547 -3.98699 1.67232 2.14658 3.34828 3.39571 3.41431 3.55677 3.74209 4.41359 4.51746 4.98656 5.07963 5.35581 5.37515 5.45181 5.52573 5.65554 5.71583 5.83295 5.91853 5.97376 6.09545 6.23626 6.34854 6.45642 6.59849 6.71719 6.93895 7.04388 7.12044 7.14193 7.34770 7.41580 7.59348 7.73907 7.85741 8.05408 8.19486 8.25366 8.52273 9.03818 9.65217 11.12616 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031993 B = 0.005595 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.972220 B = 5002.951909 C = 5145.417860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.073 4.073 4 C -0.159 4.159 5 C -0.055 4.055 6 C -0.108 4.108 7 C 0.094 3.906 8 C -0.138 4.138 9 N -0.604 5.604 10 H 0.405 0.595 11 C 0.020 3.980 12 C -0.105 4.105 13 C 0.103 3.897 14 H 0.033 0.967 15 C -0.129 4.129 16 C -0.503 4.503 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.164 0.836 33 H 0.007 0.993 34 H 0.024 0.976 35 H 0.083 0.917 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 -13.436 -5.807 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.075 4.075 4 C -0.179 4.179 5 C -0.073 4.073 6 C -0.114 4.114 7 C -0.014 4.014 8 C -0.159 4.159 9 N -0.208 5.208 10 H 0.241 0.759 11 C -0.102 4.102 12 C -0.111 4.111 13 C 0.084 3.916 14 H 0.051 0.949 15 C -0.187 4.187 16 C -0.541 4.541 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.204 1.204 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.181 0.819 33 H 0.026 0.974 34 H 0.043 0.957 35 H 0.101 0.899 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.821 -13.266 -5.793 14.748 hybrid contribution -0.657 0.897 -0.663 1.294 sum -3.478 -12.368 -6.455 14.379 Atomic orbital electron populations 1.21747 0.95193 1.01032 1.02332 1.20443 0.95804 0.93084 1.02143 1.19340 1.00147 0.95511 0.92462 1.20352 1.05384 0.95344 0.96805 1.20343 0.96373 0.93606 0.97009 1.19388 1.04785 0.95093 0.92091 1.18232 1.02519 0.91974 0.88639 1.19658 1.06818 0.91974 0.97500 1.41686 1.59995 1.12016 1.07092 0.75937 1.21538 1.05625 0.88704 0.94382 1.21199 1.02647 0.93453 0.93821 1.17253 0.92783 0.89355 0.92223 0.94929 1.21772 0.96997 0.99591 1.00362 1.21145 1.16982 0.97830 1.18143 0.92779 1.24953 0.95414 0.98475 0.95171 1.69877 1.32742 1.29119 1.21318 0.86688 0.81092 0.82527 0.77846 1.20386 1.21349 1.20402 0.92452 0.92745 0.92935 0.91719 0.91338 0.86860 0.86092 0.87319 0.81880 0.97385 0.95678 0.89854 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.90 37.16 0.37 -1.12 16 2 C -0.08 -0.86 6.04 -27.88 -0.17 -1.03 16 3 C -0.07 -1.08 5.13 -104.58 -0.54 -1.62 16 4 C -0.16 -2.55 9.62 -39.94 -0.38 -2.93 16 5 C -0.05 -1.04 10.05 -39.64 -0.40 -1.44 16 6 C -0.11 -2.25 6.35 -105.14 -0.67 -2.92 16 7 C 0.09 1.71 7.28 -83.99 -0.61 1.10 16 8 C -0.14 -2.15 9.71 -39.43 -0.38 -2.53 16 9 N -0.60 -10.00 6.07 -10.65 -0.06 -10.07 16 10 H 0.41 5.07 8.96 -40.82 -0.37 4.71 16 11 C 0.02 0.39 11.24 -16.73 -0.19 0.20 16 12 C -0.11 -2.37 4.99 -102.71 -0.51 -2.88 16 13 C 0.10 2.63 2.69 -92.92 -0.25 2.38 16 14 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.13 -3.16 8.85 37.16 0.33 -2.84 16 16 C -0.50 -13.83 8.41 -34.44 -0.29 -14.12 16 17 H 0.05 1.49 7.71 -52.49 -0.40 1.08 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.16 2.93 8.06 -52.49 -0.42 2.50 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.02 0.57 8.02 -51.93 -0.42 0.15 16 35 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 301.98 15.07 4.55 4.55 Total: -1.00 -29.93 301.98 -8.98 -38.91 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.28 Total: 3.24 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -3.79 Total: -28.15 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.56 Total: -34.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.93 -8.98 -38.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.938 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds