Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47613 * 2 1 4 4 C 1.38834 * 119.66535 * 90.00052 * 3 2 1 5 5 C 1.36625 * 120.52656 * 180.02562 * 4 3 2 6 6 C 1.39630 * 119.76695 * 359.97438 * 5 4 3 7 7 C 1.40672 * 119.92520 * 0.28583 * 6 5 4 8 8 C 1.37744 * 119.66667 * 269.98119 * 3 2 1 9 9 N 1.37687 * 107.15867 * 180.19822 * 7 6 5 10 10 H 0.97001 * 125.06642 * 179.84601 * 9 7 6 11 11 C 1.36831 * 109.87412 * 359.57407 * 9 7 6 12 12 C 1.34247 * 109.92819 * 0.26491 * 11 9 7 13 13 C 1.50700 * 126.50141 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.47410 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47176 * 300.03384 * 13 12 11 16 16 C 1.50705 * 109.46987 * 60.02820 * 13 12 11 17 17 H 1.08002 * 119.99846 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99997 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00132 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99705 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47335 * 60.00050 * 20 18 16 22 22 H 1.48504 * 109.46797 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47083 * 299.99550 * 20 18 16 24 24 H 1.09004 * 109.46870 * 300.00266 * 1 2 3 25 25 H 1.08996 * 109.47221 * 59.99679 * 1 2 3 26 26 H 1.08994 * 109.47593 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46870 * 239.99734 * 2 1 3 28 28 H 1.09001 * 109.46942 * 120.00705 * 2 1 3 29 29 H 1.07995 * 119.73350 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.11660 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.11487 * 0.02562 * 8 3 2 32 32 H 1.07994 * 125.03972 * 180.28974 * 11 9 7 33 33 H 1.09003 * 109.46711 * 299.99438 * 15 13 12 34 34 H 1.09000 * 109.47705 * 59.99797 * 15 13 12 35 35 H 1.09001 * 109.46832 * 180.02562 * 15 13 12 36 36 H 0.96998 * 119.99897 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2616 2.0686 1.2064 5 6 2.7165 3.3567 1.2269 6 6 2.9537 4.0273 0.0254 7 6 2.7179 3.3772 -1.1996 8 6 2.2601 2.0634 -1.1969 9 7 3.0389 4.2670 -2.2001 10 1 2.9743 4.0840 -3.1505 11 6 3.4567 5.4500 -1.6541 12 6 3.4283 5.3709 -0.3142 13 6 3.8127 6.4578 0.6563 14 1 3.6849 6.0959 1.6764 15 6 5.2752 6.8474 0.4327 16 6 2.9330 7.6615 0.4365 17 1 2.1715 7.6413 -0.3291 18 6 3.0996 8.7883 1.2136 19 7 4.0258 8.8124 2.1468 20 14 2.0087 10.2801 0.9415 21 1 0.5892 9.9015 1.1583 22 1 2.3866 11.3507 1.8987 23 1 2.1827 10.7737 -0.4482 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 2.0779 1.5504 2.1359 30 1 2.8921 3.8544 2.1692 31 1 2.0788 1.5510 -2.1301 32 1 3.7634 6.3189 -2.2174 33 1 5.9115 5.9768 0.5917 34 1 5.4030 7.2095 -0.5874 35 1 5.5533 7.6333 1.1350 36 1 4.1433 9.6052 2.6932 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260315919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = 18.623854 kcal Electronic energy + Delta-G solvation = -16846.868210 eV Core-core repulsion = 14294.733322 eV Total energy + Delta-G solvation = -2552.134888 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.02590 -38.45487 -36.30316 -34.23925 -33.27708 -31.14460 -29.86117 -28.41601 -27.14477 -24.43871 -23.68470 -23.41548 -21.33533 -19.87924 -18.58265 -18.09555 -16.96257 -16.49832 -16.17874 -15.35135 -15.18578 -14.74881 -14.61261 -14.39887 -14.11597 -14.01619 -13.47422 -13.32830 -12.88577 -12.80202 -12.71065 -12.28847 -12.19266 -12.02000 -11.97200 -11.82068 -11.66490 -11.19056 -10.99736 -10.42467 -10.19633 -8.92609 -8.32434 -8.00809 -6.17832 0.32287 0.80885 1.42723 1.44632 1.52051 2.01138 2.41639 2.47719 3.06105 3.22667 3.91546 4.01574 4.16882 4.31280 4.45545 4.57948 4.61790 4.64222 4.77638 4.84892 4.91678 5.00043 5.14288 5.15618 5.19769 5.27193 5.32661 5.35819 5.47825 5.61143 5.73001 5.79911 5.88121 5.97875 6.14423 6.21795 6.35506 6.49517 6.90902 6.94042 7.49686 9.00238 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031993 B = 0.005595 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.972220 B = 5002.951909 C = 5145.417860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.069 4.069 4 C -0.151 4.151 5 C -0.088 4.088 6 C -0.146 4.146 7 C 0.088 3.912 8 C -0.133 4.133 9 N -0.586 5.586 10 H 0.427 0.573 11 C 0.037 3.963 12 C -0.156 4.156 13 C 0.107 3.893 14 H -0.009 1.009 15 C -0.117 4.117 16 C -0.517 4.517 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.919 5.919 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.267 1.267 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.102 0.898 31 H 0.144 0.856 32 H 0.177 0.823 33 H 0.017 0.983 34 H 0.034 0.966 35 H 0.057 0.943 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 -15.352 -7.766 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.070 4.070 4 C -0.170 4.170 5 C -0.107 4.107 6 C -0.151 4.151 7 C -0.021 4.021 8 C -0.154 4.154 9 N -0.191 5.191 10 H 0.267 0.733 11 C -0.088 4.088 12 C -0.162 4.162 13 C 0.088 3.912 14 H 0.009 0.991 15 C -0.175 4.175 16 C -0.555 4.555 17 H 0.068 0.932 18 C -0.186 4.186 19 N -0.559 5.559 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.192 1.192 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.154 0.846 30 H 0.120 0.880 31 H 0.162 0.838 32 H 0.194 0.806 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.017 -15.210 -7.784 17.552 hybrid contribution -0.307 1.364 -0.026 1.398 sum -4.323 -13.846 -7.811 16.475 Atomic orbital electron populations 1.21741 0.94395 1.02378 1.01681 1.20526 0.96295 0.90478 1.03849 1.19834 0.98392 0.97271 0.91527 1.20666 1.03504 0.94053 0.98757 1.20408 0.98918 0.95250 0.96107 1.19600 1.06489 0.95042 0.93990 1.18481 1.02801 0.92994 0.87795 1.20084 1.05223 0.90776 0.99324 1.41542 1.58815 1.10711 1.08072 0.73322 1.21586 1.03890 0.89764 0.93511 1.20965 1.06491 0.94044 0.94723 1.17010 0.93078 0.90014 0.91115 0.99076 1.21597 0.96813 0.99016 1.00049 1.21417 1.17173 0.98820 1.18068 0.93243 1.25733 0.96686 1.01273 0.94897 1.70020 1.34068 1.29810 1.22022 0.85678 0.79064 0.79060 0.78224 1.20295 1.20898 1.19226 0.93440 0.93127 0.90643 0.89726 0.90033 0.84557 0.88005 0.83823 0.80585 0.96436 0.94649 0.92438 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.90 71.98 0.71 -1.71 16 2 C -0.07 -1.34 6.04 29.85 0.18 -1.16 16 3 C -0.07 -1.83 5.13 -19.84 -0.10 -1.94 16 4 C -0.15 -4.67 9.62 22.03 0.21 -4.46 16 5 C -0.09 -3.48 10.05 22.23 0.22 -3.26 16 6 C -0.15 -6.24 6.35 -20.20 -0.13 -6.36 16 7 C 0.09 3.05 7.28 39.03 0.28 3.33 16 8 C -0.13 -3.72 9.71 22.37 0.22 -3.51 16 9 N -0.59 -18.32 6.07 -187.60 -1.14 -19.46 16 10 H 0.43 9.41 8.96 -92.71 -0.83 8.58 16 11 C 0.04 1.42 11.24 83.00 0.93 2.36 16 12 C -0.16 -7.24 4.99 -18.63 -0.09 -7.33 16 13 C 0.11 5.76 2.69 -12.28 -0.03 5.73 16 14 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 15 C -0.12 -5.95 8.85 71.98 0.64 -5.31 16 16 C -0.52 -29.35 8.41 25.60 0.22 -29.13 16 17 H 0.05 2.78 7.71 -2.91 -0.02 2.76 16 18 C 0.01 0.69 5.30 84.66 0.45 1.14 16 19 N -0.92 -54.32 11.32 21.45 0.24 -54.08 16 20 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.25 8.08 -2.38 -0.02 1.23 16 28 H 0.08 1.30 8.08 -2.39 -0.02 1.29 16 29 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.18 6.16 8.06 -2.91 -0.02 6.13 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.03 1.66 8.02 -2.39 -0.02 1.64 16 35 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 36 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -67.08 301.98 5.07 -62.01 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.23 Total: 16.71 kcal Atomic # 6 Polarization: -55.31 SS G_CDS: 3.71 Total: -51.61 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -0.90 Total: -73.54 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.08 5.07 -62.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.634 kcal (2) G-P(sol) polarization free energy of solvation -67.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds