Wall clock time and date at job start Mon Mar 30 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47279 * 2 1 4 4 C 1.38828 * 119.66131 * 269.97303 * 3 2 1 5 5 C 1.36631 * 120.52394 * 180.02562 * 4 3 2 6 6 C 1.39634 * 119.76763 * 359.70478 * 5 4 3 7 7 C 1.40671 * 119.92052 * 0.59571 * 6 5 4 8 8 C 1.37748 * 119.66912 * 89.99419 * 3 2 1 9 9 N 1.37686 * 107.15667 * 179.64922 * 7 6 5 10 10 H 0.97005 * 125.06185 * 179.68724 * 9 7 6 11 11 C 1.36827 * 109.87258 * 359.72565 * 9 7 6 12 12 C 1.34233 * 109.93328 * 359.97438 * 11 9 7 13 13 C 1.50703 * 126.50500 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.47492 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46596 * 60.02535 * 13 12 11 16 16 C 1.50702 * 109.46776 * 300.03088 * 13 12 11 17 17 H 1.07995 * 120.00234 * 5.61228 * 16 13 12 18 18 C 1.37885 * 119.99448 * 185.62145 * 16 13 12 19 19 N 1.31518 * 119.99425 * 197.57280 * 18 16 13 20 20 Si 1.86792 * 120.00254 * 17.57044 * 18 16 13 21 21 H 1.48504 * 109.47394 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47065 * 60.00045 * 20 18 16 23 23 H 1.48505 * 109.47257 * 299.99926 * 20 18 16 24 24 H 1.08997 * 109.47087 * 300.00695 * 1 2 3 25 25 H 1.08999 * 109.46583 * 60.00401 * 1 2 3 26 26 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47087 * 239.99305 * 2 1 3 28 28 H 1.08999 * 109.46583 * 119.99599 * 2 1 3 29 29 H 1.07998 * 119.74042 * 0.02562 * 4 3 2 30 30 H 1.07997 * 120.11499 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.11052 * 359.95940 * 8 3 2 32 32 H 1.08006 * 125.03077 * 179.97438 * 11 9 7 33 33 H 1.09008 * 109.46491 * 186.22613 * 15 13 12 34 34 H 1.08998 * 109.47129 * 306.22653 * 15 13 12 35 35 H 1.08997 * 109.46710 * 66.23448 * 15 13 12 36 36 H 0.96997 * 119.99959 * 354.83616 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0684 -1.2064 5 6 2.7179 3.3562 -1.2269 6 6 2.9492 4.0290 -0.0254 7 6 2.7241 3.3751 1.1995 8 6 2.2596 2.0637 1.1969 9 7 3.0393 4.2670 2.2000 10 1 2.9737 4.0843 3.1504 11 6 3.4579 5.4496 1.6539 12 6 3.4309 5.3700 0.3142 13 6 3.8154 6.4569 -0.6564 14 1 3.6879 6.0948 -1.6766 15 6 5.2780 6.8464 -0.4325 16 6 2.9357 7.6606 -0.4369 17 1 2.2366 7.6757 0.3861 18 6 3.0233 8.7427 -1.2870 19 7 2.5343 9.9075 -0.9213 20 14 3.8365 8.5542 -2.9581 21 1 3.8034 9.8547 -3.6743 22 1 3.1066 7.5329 -3.7514 23 1 5.2467 8.1253 -2.7768 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0788 1.5501 -2.1360 30 1 2.8939 3.8537 -2.1692 31 1 2.0777 1.5515 2.1301 32 1 3.7647 6.3185 2.2173 33 1 5.5247 7.7056 -1.0563 34 1 5.4292 7.1032 0.6159 35 1 5.9219 6.0080 -0.6979 36 1 2.0464 9.9882 -0.0869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260315921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:43 Heat of formation + Delta-G solvation = 34.204347 kcal Electronic energy + Delta-G solvation = -16910.321038 eV Core-core repulsion = 14358.861771 eV Total energy + Delta-G solvation = -2551.459267 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73306 -37.28814 -34.51326 -33.19402 -31.67658 -29.98870 -28.64733 -27.25257 -24.60729 -23.45690 -22.28655 -21.65256 -20.21846 -18.26903 -17.27353 -17.08134 -15.75056 -15.11069 -14.29971 -14.01829 -13.86497 -13.48717 -13.30630 -13.09183 -12.98834 -12.61270 -12.33287 -11.94456 -11.59092 -11.23441 -11.08092 -10.98223 -10.86482 -10.81003 -10.39403 -10.15549 -9.72980 -9.55078 -9.07101 -8.74692 -8.12703 -7.66200 -6.99920 -6.32861 -3.97525 1.57614 2.05300 3.42084 3.45279 3.48958 3.63828 3.67264 4.33578 4.55366 4.91955 5.01771 5.27403 5.32203 5.39887 5.43493 5.59021 5.62669 5.76021 5.85368 5.88205 5.99283 6.18909 6.24618 6.32622 6.39917 6.48120 6.58833 6.81945 6.86299 6.94183 7.03159 7.15914 7.36778 7.40023 7.64236 7.76300 8.10338 8.24602 8.45624 8.99263 9.69652 11.01618 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031140 B = 0.006135 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.951572 B = 4562.596715 C = 4942.194411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.073 4.073 4 C -0.157 4.157 5 C -0.058 4.058 6 C -0.108 4.108 7 C 0.095 3.905 8 C -0.136 4.136 9 N -0.603 5.603 10 H 0.407 0.593 11 C 0.026 3.974 12 C -0.102 4.102 13 C 0.076 3.924 14 H 0.026 0.974 15 C -0.141 4.141 16 C -0.586 4.586 17 H 0.055 0.945 18 C 0.029 3.971 19 N -0.911 5.911 20 Si 1.045 2.955 21 H -0.288 1.288 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.164 0.836 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.022 0.978 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -16.915 3.289 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.074 4.074 4 C -0.176 4.176 5 C -0.077 4.077 6 C -0.114 4.114 7 C -0.013 4.013 8 C -0.157 4.157 9 N -0.206 5.206 10 H 0.242 0.758 11 C -0.096 4.096 12 C -0.109 4.109 13 C 0.057 3.943 14 H 0.044 0.956 15 C -0.199 4.199 16 C -0.624 4.624 17 H 0.073 0.927 18 C -0.176 4.176 19 N -0.545 5.545 20 Si 0.874 3.126 21 H -0.214 1.214 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.181 0.819 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.865 -16.016 2.072 16.173 hybrid contribution -0.642 -0.802 1.988 2.238 sum 0.223 -16.819 4.060 17.303 Atomic orbital electron populations 1.21750 0.95127 1.01102 1.02360 1.20450 0.95863 0.92979 1.02201 1.19357 1.00043 0.95571 0.92418 1.20360 1.05095 0.95299 0.96888 1.20317 0.96841 0.93679 0.96845 1.19348 1.04946 0.94855 0.92204 1.18220 1.02541 0.91971 0.88535 1.19677 1.06440 0.92036 0.97596 1.41678 1.59977 1.11792 1.07201 0.75779 1.21506 1.05133 0.88696 0.94304 1.20768 1.03440 0.93073 0.93578 1.17564 0.92854 0.91448 0.92470 0.95640 1.22212 0.97671 0.99231 1.00768 1.21998 1.23774 1.01019 1.15653 0.92680 1.25756 0.97171 0.91824 1.02812 1.70870 1.34921 1.23088 1.25644 0.84046 0.76871 0.75757 0.75966 1.21364 1.20998 1.19968 0.92727 0.92435 0.92868 0.91290 0.91660 0.86745 0.86215 0.87186 0.81861 0.92790 0.94009 0.95899 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.90 37.16 0.37 -1.09 16 2 C -0.08 -0.83 6.05 -27.88 -0.17 -1.00 16 3 C -0.07 -1.04 5.13 -104.58 -0.54 -1.57 16 4 C -0.16 -2.42 9.62 -39.94 -0.38 -2.80 16 5 C -0.06 -1.07 10.05 -39.64 -0.40 -1.47 16 6 C -0.11 -2.20 6.35 -105.14 -0.67 -2.87 16 7 C 0.10 1.70 7.28 -83.99 -0.61 1.09 16 8 C -0.14 -2.06 9.71 -39.43 -0.38 -2.45 16 9 N -0.60 -9.87 6.07 -10.65 -0.06 -9.94 16 10 H 0.41 5.04 8.96 -40.82 -0.37 4.68 16 11 C 0.03 0.51 11.07 -16.73 -0.19 0.33 16 12 C -0.10 -2.26 5.00 -102.71 -0.51 -2.77 16 13 C 0.08 1.85 2.28 -92.92 -0.21 1.64 16 14 H 0.03 0.63 6.79 -51.93 -0.35 0.28 16 15 C -0.14 -3.14 8.82 37.16 0.33 -2.81 16 16 C -0.59 -16.49 8.68 -34.44 -0.30 -16.79 16 17 H 0.05 1.68 7.91 -52.49 -0.42 1.26 16 18 C 0.03 0.82 5.29 -17.82 -0.09 0.73 16 19 N -0.91 -28.04 13.70 55.43 0.76 -27.28 16 20 Si 1.04 25.38 26.29 -169.99 -4.47 20.91 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.11 5.76 56.52 0.33 -5.79 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.16 2.97 8.06 -52.48 -0.42 2.54 16 33 H 0.05 1.24 4.89 -51.92 -0.25 0.99 16 34 H 0.04 0.88 7.84 -51.93 -0.41 0.48 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -31.46 297.33 -8.30 -39.75 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.24 Total: 3.91 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: -3.76 Total: -31.84 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.69 Total: -37.22 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.47 Total: 20.91 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.46 -8.30 -39.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.958 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds