Wall clock time and date at job start Mon Mar 30 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47279 * 2 1 4 4 C 1.38828 * 119.66131 * 269.97303 * 3 2 1 5 5 C 1.36631 * 120.52394 * 180.02562 * 4 3 2 6 6 C 1.39634 * 119.76763 * 359.70478 * 5 4 3 7 7 C 1.40671 * 119.92052 * 0.59571 * 6 5 4 8 8 C 1.37748 * 119.66912 * 89.99419 * 3 2 1 9 9 N 1.37686 * 107.15667 * 179.64922 * 7 6 5 10 10 H 0.97005 * 125.06185 * 179.68724 * 9 7 6 11 11 C 1.36827 * 109.87258 * 359.72565 * 9 7 6 12 12 C 1.34233 * 109.93328 * 359.97438 * 11 9 7 13 13 C 1.50703 * 126.50500 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.47492 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46596 * 60.02535 * 13 12 11 16 16 C 1.50702 * 109.46776 * 300.03088 * 13 12 11 17 17 H 1.07995 * 120.00234 * 5.61228 * 16 13 12 18 18 C 1.37885 * 119.99448 * 185.62145 * 16 13 12 19 19 N 1.31518 * 119.99425 * 197.57280 * 18 16 13 20 20 Si 1.86792 * 120.00254 * 17.57044 * 18 16 13 21 21 H 1.48504 * 109.47394 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47065 * 60.00045 * 20 18 16 23 23 H 1.48505 * 109.47257 * 299.99926 * 20 18 16 24 24 H 1.08997 * 109.47087 * 300.00695 * 1 2 3 25 25 H 1.08999 * 109.46583 * 60.00401 * 1 2 3 26 26 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47087 * 239.99305 * 2 1 3 28 28 H 1.08999 * 109.46583 * 119.99599 * 2 1 3 29 29 H 1.07998 * 119.74042 * 0.02562 * 4 3 2 30 30 H 1.07997 * 120.11499 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.11052 * 359.95940 * 8 3 2 32 32 H 1.08006 * 125.03077 * 179.97438 * 11 9 7 33 33 H 1.09008 * 109.46491 * 186.22613 * 15 13 12 34 34 H 1.08998 * 109.47129 * 306.22653 * 15 13 12 35 35 H 1.08997 * 109.46710 * 66.23448 * 15 13 12 36 36 H 0.96997 * 119.99959 * 354.83616 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0684 -1.2064 5 6 2.7179 3.3562 -1.2269 6 6 2.9492 4.0290 -0.0254 7 6 2.7241 3.3751 1.1995 8 6 2.2596 2.0637 1.1969 9 7 3.0393 4.2670 2.2000 10 1 2.9737 4.0843 3.1504 11 6 3.4579 5.4496 1.6539 12 6 3.4309 5.3700 0.3142 13 6 3.8154 6.4569 -0.6564 14 1 3.6879 6.0948 -1.6766 15 6 5.2780 6.8464 -0.4325 16 6 2.9357 7.6606 -0.4369 17 1 2.2366 7.6757 0.3861 18 6 3.0233 8.7427 -1.2870 19 7 2.5343 9.9075 -0.9213 20 14 3.8365 8.5542 -2.9581 21 1 3.8034 9.8547 -3.6743 22 1 3.1066 7.5329 -3.7514 23 1 5.2467 8.1253 -2.7768 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0788 1.5501 -2.1360 30 1 2.8939 3.8537 -2.1692 31 1 2.0777 1.5515 2.1301 32 1 3.7647 6.3185 2.2173 33 1 5.5247 7.7056 -1.0563 34 1 5.4292 7.1032 0.6159 35 1 5.9219 6.0080 -0.6979 36 1 2.0464 9.9882 -0.0869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260315921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:43 Heat of formation + Delta-G solvation = 16.186765 kcal Electronic energy + Delta-G solvation = -16911.102339 eV Core-core repulsion = 14358.861771 eV Total energy + Delta-G solvation = -2552.240568 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.10080 -38.50754 -36.40726 -34.28691 -33.63508 -31.36964 -29.98737 -28.57584 -26.67594 -24.49163 -23.61261 -23.39814 -21.39558 -20.04892 -19.10983 -18.61577 -17.08799 -16.25813 -15.81534 -15.46851 -15.26733 -14.97112 -14.69918 -14.57838 -14.27878 -14.05902 -13.83651 -13.39487 -13.18147 -12.88087 -12.47554 -12.27304 -12.13086 -12.05056 -11.79757 -11.61533 -11.59517 -11.34687 -10.99678 -10.38090 -10.25907 -8.97902 -8.77524 -8.28365 -6.28153 0.27459 0.77004 1.48324 1.55601 1.75031 1.92706 2.34275 2.52089 3.01633 3.12344 3.86670 3.97878 4.07593 4.25939 4.41072 4.47917 4.55426 4.60321 4.66127 4.74620 4.80934 4.85885 5.00212 5.07234 5.11092 5.17032 5.20211 5.27596 5.38067 5.45659 5.64237 5.73118 5.79604 5.91798 6.04799 6.10714 6.17050 6.37896 6.65346 6.84415 7.47600 8.70104 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031140 B = 0.006135 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.951572 B = 4562.596715 C = 4942.194411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.067 4.067 4 C -0.149 4.149 5 C -0.087 4.087 6 C -0.144 4.144 7 C 0.086 3.914 8 C -0.135 4.135 9 N -0.588 5.588 10 H 0.426 0.574 11 C 0.033 3.967 12 C -0.150 4.150 13 C 0.078 3.922 14 H 0.020 0.980 15 C -0.135 4.135 16 C -0.582 4.582 17 H 0.015 0.985 18 C -0.022 4.022 19 N -0.943 5.943 20 Si 1.081 2.919 21 H -0.290 1.290 22 H -0.269 1.269 23 H -0.241 1.241 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.113 0.887 31 H 0.141 0.859 32 H 0.168 0.832 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 -20.290 3.201 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.069 4.069 4 C -0.168 4.168 5 C -0.105 4.105 6 C -0.149 4.149 7 C -0.022 4.022 8 C -0.156 4.156 9 N -0.193 5.193 10 H 0.265 0.735 11 C -0.092 4.092 12 C -0.156 4.156 13 C 0.058 3.942 14 H 0.038 0.962 15 C -0.192 4.192 16 C -0.620 4.620 17 H 0.034 0.966 18 C -0.219 4.219 19 N -0.580 5.580 20 Si 0.903 3.097 21 H -0.216 1.216 22 H -0.195 1.195 23 H -0.165 1.165 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.159 0.841 30 H 0.131 0.869 31 H 0.159 0.841 32 H 0.185 0.815 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.318 -19.434 2.029 19.584 hybrid contribution -0.884 0.112 2.098 2.279 sum 0.434 -19.322 4.126 19.762 Atomic orbital electron populations 1.21746 0.94497 1.02392 1.01636 1.20534 0.96202 0.90510 1.03933 1.19858 0.98178 0.97257 0.91582 1.20713 1.03188 0.94179 0.98737 1.20466 0.98781 0.95129 0.96172 1.19555 1.06622 0.94636 0.94093 1.18517 1.02871 0.92984 0.87839 1.20083 1.05206 0.90902 0.99409 1.41549 1.58971 1.10593 1.08163 0.73463 1.21516 1.04189 0.89639 0.93846 1.20687 1.06659 0.93953 0.94315 1.17422 0.93161 0.90581 0.93042 0.96152 1.22084 0.96647 0.99692 1.00804 1.22176 1.23150 1.02821 1.13891 0.96616 1.27136 0.97467 0.91292 1.06002 1.71002 1.37050 1.24545 1.25376 0.83614 0.78159 0.76020 0.71935 1.21649 1.19477 1.16487 0.93357 0.93319 0.90632 0.89752 0.89849 0.84139 0.86895 0.84089 0.81508 0.93668 0.93797 0.93461 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.90 71.98 0.71 -1.63 16 2 C -0.07 -1.27 6.05 29.85 0.18 -1.09 16 3 C -0.07 -1.70 5.13 -19.84 -0.10 -1.80 16 4 C -0.15 -4.25 9.62 22.03 0.21 -4.04 16 5 C -0.09 -3.14 10.05 22.23 0.22 -2.92 16 6 C -0.14 -5.84 6.35 -20.20 -0.13 -5.96 16 7 C 0.09 2.93 7.28 39.03 0.28 3.22 16 8 C -0.14 -3.68 9.71 22.37 0.22 -3.46 16 9 N -0.59 -18.58 6.07 -187.61 -1.14 -19.72 16 10 H 0.43 9.76 8.96 -92.70 -0.83 8.93 16 11 C 0.03 1.28 11.07 83.00 0.92 2.20 16 12 C -0.15 -6.68 5.00 -18.63 -0.09 -6.78 16 13 C 0.08 3.82 2.28 -12.28 -0.03 3.79 16 14 H 0.02 1.01 6.79 -2.39 -0.02 1.00 16 15 C -0.13 -5.92 8.82 71.98 0.63 -5.28 16 16 C -0.58 -33.96 8.68 25.60 0.22 -33.73 16 17 H 0.02 1.00 7.91 -2.91 -0.02 0.98 16 18 C -0.02 -1.30 5.29 84.66 0.45 -0.85 16 19 N -0.94 -60.23 13.70 21.45 0.29 -59.93 16 20 Si 1.08 51.28 26.29 68.60 1.80 53.08 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.24 -10.10 5.76 99.48 0.57 -9.53 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 28 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 29 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.11 4.06 8.06 -2.91 -0.02 4.03 16 31 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.17 6.18 8.06 -2.91 -0.02 6.16 16 33 H 0.04 2.02 4.89 -2.38 -0.01 2.01 16 34 H 0.04 1.85 7.84 -2.39 -0.02 1.84 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 Total: -1.00 -70.56 297.33 4.73 -65.84 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.07 Total: 19.08 kcal Atomic # 6 Polarization: -62.05 SS G_CDS: 3.70 Total: -58.35 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -0.85 Total: -79.65 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 1.80 Total: 53.08 kcal Total: -70.56 4.73 -65.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.022 kcal (2) G-P(sol) polarization free energy of solvation -70.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds