Wall clock time and date at job start Mon Mar 30 2020 05:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48501 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47147 * 299.99347 * 3 2 1 6 6 H 1.48495 * 109.47265 * 60.00065 * 3 2 1 7 7 C 1.40311 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00163 * 180.02562 * 7 2 1 9 9 C 1.40079 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.35029 * 119.99868 * 179.97438 * 9 7 2 11 11 C 1.50702 * 119.99972 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46794 * 125.00009 * 11 10 9 13 13 C 1.46427 * 110.99834 * 167.22416 * 12 11 10 14 14 C 1.53387 * 108.66302 * 72.19292 * 13 12 11 15 15 C 1.53046 * 107.92735 * 68.23266 * 14 13 12 16 16 C 1.50804 * 109.65704 * 312.69093 * 15 14 13 17 17 C 1.38618 * 118.12603 * 195.76057 * 16 15 14 18 18 C 1.38047 * 120.48711 * 180.71336 * 17 16 15 19 19 C 1.38316 * 119.88596 * 359.39046 * 18 17 16 20 20 C 1.37807 * 119.95380 * 0.15709 * 19 18 17 21 21 C 1.38372 * 122.01456 * 15.66407 * 16 15 14 22 22 H 0.96996 * 119.99978 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.99668 * 359.97438 * 9 7 2 24 24 H 1.08000 * 120.00029 * 0.02562 * 10 9 7 25 25 H 1.09002 * 109.46929 * 5.00383 * 11 10 9 26 26 H 1.08996 * 109.47538 * 245.00329 * 11 10 9 27 27 H 1.08997 * 109.60758 * 191.94442 * 13 12 11 28 28 H 1.09001 * 109.60634 * 312.28003 * 13 12 11 29 29 H 1.08996 * 109.77320 * 187.83739 * 14 13 12 30 30 H 1.09000 * 109.76792 * 308.57174 * 14 13 12 31 31 H 1.09000 * 109.44257 * 72.75013 * 15 14 13 32 32 H 1.09000 * 109.43664 * 192.67501 * 15 14 13 33 33 H 1.08003 * 119.75624 * 0.42299 * 17 16 15 34 34 H 1.08002 * 120.05904 * 179.67613 * 18 17 16 35 35 H 1.08008 * 120.01933 * 180.12973 * 19 18 17 36 36 H 1.08000 * 119.78647 * 180.11875 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8822 2.3964 -1.2126 6 1 1.8822 2.3964 1.2125 7 6 2.0085 -1.2151 0.0005 8 1 3.0884 -1.2151 0.0010 9 6 1.3081 -2.4282 0.0005 10 6 1.9833 -3.5976 0.0005 11 6 1.2298 -4.9027 0.0011 12 7 1.6726 -5.7242 -1.1334 13 6 1.1962 -7.1024 -1.0008 14 6 -0.3148 -7.1269 -1.2633 15 6 -0.5412 -6.8077 -2.7429 16 6 0.2786 -5.6036 -3.1332 17 6 -0.0325 -4.9580 -4.3198 18 6 0.6957 -3.8599 -4.7314 19 6 1.7360 -3.3904 -3.9500 20 6 2.0452 -4.0215 -2.7646 21 6 1.3157 -5.1357 -2.3457 22 1 -0.4850 0.8400 -0.0004 23 1 0.2281 -2.4282 0.0005 24 1 3.0633 -3.5976 0.0010 25 1 0.1615 -4.7055 -0.0881 26 1 1.4245 -5.4343 0.9325 27 1 1.7040 -7.7365 -1.7276 28 1 1.4007 -7.4648 0.0067 29 1 -0.7129 -8.1154 -1.0344 30 1 -0.8088 -6.3782 -0.6440 31 1 -0.2411 -7.6628 -3.3486 32 1 -1.5973 -6.5968 -2.9110 33 1 -0.8476 -5.3197 -4.9291 34 1 0.4507 -3.3653 -5.6598 35 1 2.3058 -2.5301 -4.2690 36 1 2.8568 -3.6515 -2.1556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:16 Heat of formation + Delta-G solvation = 27.015811 kcal Electronic energy + Delta-G solvation = -17313.985360 eV Core-core repulsion = 14762.214374 eV Total energy + Delta-G solvation = -2551.770986 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96963 -36.39850 -34.47529 -33.41015 -31.03007 -29.79060 -29.16798 -26.98791 -24.28850 -22.88002 -22.56541 -21.30108 -19.28923 -18.11247 -16.93952 -16.03366 -15.52883 -15.12809 -14.86219 -14.10911 -13.86302 -13.52679 -13.08212 -12.97504 -12.67333 -12.42408 -12.01926 -11.85281 -11.55396 -11.32908 -11.10076 -10.91014 -10.82319 -10.55077 -10.24615 -10.12776 -9.65129 -9.52531 -9.31454 -8.58986 -8.10663 -7.58536 -7.16553 -6.74360 -4.24526 1.99988 2.10776 2.94203 3.09924 3.16328 3.83696 3.98747 4.38974 4.63559 5.08759 5.10970 5.20908 5.45274 5.51812 5.65069 5.69221 5.78763 5.90195 5.94569 6.06437 6.14144 6.24741 6.32280 6.45339 6.47307 6.52097 6.77340 7.01543 7.08092 7.16039 7.19944 7.24355 7.25789 7.50892 7.80192 8.04564 8.19200 8.45712 8.70917 9.08940 9.28250 10.29056 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.006969 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.089946 B = 4016.592162 C = 4551.545652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.070 0.930 9 C 0.066 3.934 10 C -0.418 4.418 11 C 0.139 3.861 12 N -0.502 5.502 13 C 0.055 3.945 14 C -0.159 4.159 15 C -0.071 4.071 16 C -0.136 4.136 17 C -0.119 4.119 18 C -0.144 4.144 19 C -0.115 4.115 20 C -0.083 4.083 21 C 0.131 3.869 22 H 0.280 0.720 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.020 0.980 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -8.515 -5.403 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.487 4.487 8 H 0.088 0.912 9 C 0.044 3.956 10 C -0.441 4.441 11 C 0.017 3.983 12 N -0.218 5.218 13 C -0.073 4.073 14 C -0.198 4.198 15 C -0.108 4.108 16 C -0.139 4.139 17 C -0.137 4.137 18 C -0.163 4.163 19 C -0.134 4.134 20 C -0.103 4.103 21 C 0.034 3.966 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.704 -8.399 -5.304 9.959 hybrid contribution -0.607 0.930 -0.064 1.113 sum -1.311 -7.469 -5.368 9.291 Atomic orbital electron populations 1.69580 1.07710 1.29317 1.37920 1.26119 0.94766 1.01742 0.91732 0.86241 0.80920 0.80960 0.78427 1.18389 1.19932 1.19965 1.19604 0.94614 0.90726 1.43792 0.91212 1.19883 0.96302 0.91983 0.87390 1.21769 0.96560 0.90709 1.35023 1.20670 0.95539 0.93388 0.88718 1.59034 1.58872 1.01865 1.02025 1.22175 0.92699 0.90592 1.01800 1.22197 0.98946 1.01826 0.96793 1.20413 0.98830 0.95545 0.96020 1.19828 0.96716 0.99822 0.97529 1.20725 0.99981 0.96788 0.96234 1.20873 0.97572 0.97686 1.00139 1.20973 0.97904 0.99487 0.95032 1.21354 1.00064 0.94190 0.94662 1.18403 0.92362 0.94751 0.91088 0.90979 0.90799 0.90261 0.96209 0.93292 0.91210 0.90662 0.91479 0.91349 0.91386 0.91354 0.87317 0.87143 0.86622 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.01 12.86 55.57 0.71 -21.29 16 2 C 0.07 1.90 5.50 -17.26 -0.09 1.80 16 3 Si 0.91 19.37 29.56 -169.99 -5.03 14.34 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.46 -12.47 9.05 -38.11 -0.35 -12.81 16 8 H 0.07 1.88 7.85 -52.49 -0.41 1.46 16 9 C 0.07 1.77 8.89 -40.03 -0.36 1.42 16 10 C -0.42 -10.30 6.48 -35.45 -0.23 -10.52 16 11 C 0.14 2.99 4.98 -4.97 -0.02 2.96 16 12 N -0.50 -9.79 4.55 -172.65 -0.79 -10.57 16 13 C 0.06 0.86 5.81 -3.88 -0.02 0.84 16 14 C -0.16 -2.27 6.03 -26.51 -0.16 -2.43 16 15 C -0.07 -1.03 5.81 -27.81 -0.16 -1.19 16 16 C -0.14 -2.43 5.74 -104.38 -0.60 -3.03 16 17 C -0.12 -1.99 9.63 -39.51 -0.38 -2.37 16 18 C -0.14 -2.46 10.05 -39.62 -0.40 -2.86 16 19 C -0.12 -2.18 10.03 -39.71 -0.40 -2.58 16 20 C -0.08 -1.74 8.36 -39.23 -0.33 -2.07 16 21 C 0.13 2.63 5.08 -83.85 -0.43 2.20 16 22 H 0.28 6.83 8.29 -40.82 -0.34 6.49 16 23 H 0.07 2.14 7.27 -52.49 -0.38 1.76 16 24 H 0.08 2.03 7.86 -52.49 -0.41 1.61 16 25 H 0.02 0.44 6.69 -51.93 -0.35 0.10 16 26 H 0.05 0.98 7.84 -51.93 -0.41 0.58 16 27 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 28 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 36 H 0.14 3.06 6.37 -52.49 -0.33 2.73 16 LS Contribution 293.16 15.07 4.42 4.42 Total: -1.00 -27.84 293.16 -9.74 -37.59 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.14 Total: 6.17 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: -3.92 Total: -30.65 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: -0.07 Total: -31.87 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.84 -9.74 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.602 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds