Wall clock time and date at job start Mon Mar 30 2020 05:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48501 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47147 * 299.99347 * 3 2 1 6 6 H 1.48495 * 109.47265 * 60.00065 * 3 2 1 7 7 C 1.40311 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00163 * 180.02562 * 7 2 1 9 9 C 1.40079 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.35029 * 119.99868 * 179.97438 * 9 7 2 11 11 C 1.50702 * 119.99972 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46794 * 125.00009 * 11 10 9 13 13 C 1.46427 * 110.99834 * 167.22416 * 12 11 10 14 14 C 1.53387 * 108.66302 * 72.19292 * 13 12 11 15 15 C 1.53046 * 107.92735 * 68.23266 * 14 13 12 16 16 C 1.50804 * 109.65704 * 312.69093 * 15 14 13 17 17 C 1.38618 * 118.12603 * 195.76057 * 16 15 14 18 18 C 1.38047 * 120.48711 * 180.71336 * 17 16 15 19 19 C 1.38316 * 119.88596 * 359.39046 * 18 17 16 20 20 C 1.37807 * 119.95380 * 0.15709 * 19 18 17 21 21 C 1.38372 * 122.01456 * 15.66407 * 16 15 14 22 22 H 0.96996 * 119.99978 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.99668 * 359.97438 * 9 7 2 24 24 H 1.08000 * 120.00029 * 0.02562 * 10 9 7 25 25 H 1.09002 * 109.46929 * 5.00383 * 11 10 9 26 26 H 1.08996 * 109.47538 * 245.00329 * 11 10 9 27 27 H 1.08997 * 109.60758 * 191.94442 * 13 12 11 28 28 H 1.09001 * 109.60634 * 312.28003 * 13 12 11 29 29 H 1.08996 * 109.77320 * 187.83739 * 14 13 12 30 30 H 1.09000 * 109.76792 * 308.57174 * 14 13 12 31 31 H 1.09000 * 109.44257 * 72.75013 * 15 14 13 32 32 H 1.09000 * 109.43664 * 192.67501 * 15 14 13 33 33 H 1.08003 * 119.75624 * 0.42299 * 17 16 15 34 34 H 1.08002 * 120.05904 * 179.67613 * 18 17 16 35 35 H 1.08008 * 120.01933 * 180.12973 * 19 18 17 36 36 H 1.08000 * 119.78647 * 180.11875 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8822 2.3964 -1.2126 6 1 1.8822 2.3964 1.2125 7 6 2.0085 -1.2151 0.0005 8 1 3.0884 -1.2151 0.0010 9 6 1.3081 -2.4282 0.0005 10 6 1.9833 -3.5976 0.0005 11 6 1.2298 -4.9027 0.0011 12 7 1.6726 -5.7242 -1.1334 13 6 1.1962 -7.1024 -1.0008 14 6 -0.3148 -7.1269 -1.2633 15 6 -0.5412 -6.8077 -2.7429 16 6 0.2786 -5.6036 -3.1332 17 6 -0.0325 -4.9580 -4.3198 18 6 0.6957 -3.8599 -4.7314 19 6 1.7360 -3.3904 -3.9500 20 6 2.0452 -4.0215 -2.7646 21 6 1.3157 -5.1357 -2.3457 22 1 -0.4850 0.8400 -0.0004 23 1 0.2281 -2.4282 0.0005 24 1 3.0633 -3.5976 0.0010 25 1 0.1615 -4.7055 -0.0881 26 1 1.4245 -5.4343 0.9325 27 1 1.7040 -7.7365 -1.7276 28 1 1.4007 -7.4648 0.0067 29 1 -0.7129 -8.1154 -1.0344 30 1 -0.8088 -6.3782 -0.6440 31 1 -0.2411 -7.6628 -3.3486 32 1 -1.5973 -6.5968 -2.9110 33 1 -0.8476 -5.3197 -4.9291 34 1 0.4507 -3.3653 -5.6598 35 1 2.3058 -2.5301 -4.2690 36 1 2.8568 -3.6515 -2.1556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:15 Heat of formation + Delta-G solvation = 12.637135 kcal Electronic energy + Delta-G solvation = -17314.608866 eV Core-core repulsion = 14762.214374 eV Total energy + Delta-G solvation = -2552.394492 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.37646 -37.82813 -36.35717 -34.97504 -32.89626 -31.13358 -30.63513 -28.76977 -25.84497 -24.55879 -23.87802 -22.74508 -20.93697 -19.77318 -19.02145 -17.51114 -16.95559 -16.74329 -16.43304 -15.44953 -15.33511 -15.02477 -14.70608 -14.53574 -14.17681 -13.78733 -13.60539 -13.38200 -13.07873 -12.98589 -12.69516 -12.38982 -12.26058 -12.08011 -11.85847 -11.50703 -11.44879 -11.37316 -11.35886 -10.05522 -9.75963 -9.40002 -8.71221 -8.64674 -6.32078 0.56871 0.65623 1.21479 1.34815 1.50711 1.92694 2.19742 2.89622 3.18056 3.44589 3.87882 3.92582 4.03759 4.19267 4.33344 4.43105 4.52866 4.54844 4.67036 4.71912 4.82810 4.86035 4.92002 4.99508 5.00657 5.11599 5.21840 5.25139 5.26404 5.36735 5.62148 5.68714 5.78451 5.90937 6.04641 6.25972 6.43899 6.61066 6.73525 7.02515 7.19906 8.34833 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.006969 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.089946 B = 4016.592162 C = 4551.545652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.044 3.956 10 C -0.395 4.395 11 C 0.149 3.851 12 N -0.513 5.513 13 C 0.051 3.949 14 C -0.154 4.154 15 C -0.070 4.070 16 C -0.142 4.142 17 C -0.119 4.119 18 C -0.143 4.143 19 C -0.132 4.132 20 C -0.113 4.113 21 C 0.105 3.895 22 H 0.290 0.710 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.005 0.995 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 -9.480 -6.555 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.082 0.918 9 C 0.023 3.977 10 C -0.417 4.417 11 C 0.025 3.975 12 N -0.229 5.229 13 C -0.076 4.076 14 C -0.192 4.192 15 C -0.107 4.107 16 C -0.144 4.144 17 C -0.138 4.138 18 C -0.161 4.161 19 C -0.151 4.151 20 C -0.133 4.133 21 C 0.009 3.991 22 H 0.100 0.900 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.023 0.977 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.519 -9.393 -6.461 11.502 hybrid contribution -0.365 1.088 0.233 1.171 sum -1.884 -8.305 -6.228 10.550 Atomic orbital electron populations 1.69634 1.09186 1.30904 1.38404 1.27001 0.95619 1.05149 0.90625 0.85114 0.79189 0.75955 0.79163 1.18319 1.18732 1.18588 1.19754 0.94421 0.91955 1.46029 0.91849 1.19778 0.94917 0.93166 0.89806 1.21867 0.95872 0.91888 1.32120 1.20469 0.94026 0.92440 0.90531 1.58829 1.59718 1.03312 1.01063 1.22348 0.93928 0.88153 1.03150 1.22165 0.97581 1.03069 0.96420 1.20529 0.99018 0.94817 0.96358 1.20295 0.95959 1.00838 0.97353 1.21200 1.00378 0.96143 0.96047 1.21256 0.96398 0.97697 1.00770 1.21175 0.99068 0.99908 0.94959 1.21286 1.00395 0.95848 0.95750 1.18584 0.93578 0.95159 0.91817 0.90007 0.93362 0.91635 0.97711 0.91710 0.89826 0.89338 0.87904 0.93658 0.88771 0.89853 0.83743 0.84048 0.85994 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.09 12.86 21.89 0.28 -46.81 16 2 C 0.03 1.55 5.50 85.37 0.47 2.02 16 3 Si 0.99 40.14 29.56 68.60 2.03 42.17 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.49 -28.08 9.05 23.22 0.21 -27.87 16 8 H 0.06 3.59 7.85 -2.92 -0.02 3.56 16 9 C 0.04 2.53 8.89 21.98 0.20 2.73 16 10 C -0.40 -20.45 6.48 24.95 0.16 -20.28 16 11 C 0.15 6.54 4.98 85.56 0.43 6.96 16 12 N -0.51 -20.04 4.55 -700.14 -3.19 -23.22 16 13 C 0.05 1.49 5.81 86.52 0.50 2.00 16 14 C -0.15 -3.97 6.03 30.74 0.19 -3.79 16 15 C -0.07 -1.80 5.81 29.90 0.17 -1.63 16 16 C -0.14 -4.82 5.74 -19.71 -0.11 -4.93 16 17 C -0.12 -3.70 9.63 22.32 0.21 -3.48 16 18 C -0.14 -4.65 10.05 22.24 0.22 -4.43 16 19 C -0.13 -5.09 10.03 22.19 0.22 -4.87 16 20 C -0.11 -4.93 8.36 22.50 0.19 -4.74 16 21 C 0.11 4.25 5.08 38.30 0.19 4.44 16 22 H 0.29 14.32 8.29 -92.71 -0.77 13.55 16 23 H 0.05 2.97 7.27 -2.91 -0.02 2.95 16 24 H 0.07 3.54 7.86 -2.91 -0.02 3.52 16 25 H 0.00 0.22 6.69 -2.39 -0.02 0.20 16 26 H 0.06 2.61 7.84 -2.39 -0.02 2.59 16 27 H 0.08 2.23 8.11 -2.39 -0.02 2.21 16 28 H 0.09 2.32 7.85 -2.39 -0.02 2.30 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.39 6.69 -2.39 -0.02 1.37 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.11 5.11 6.37 -2.91 -0.02 5.09 16 Total: -1.00 -63.22 293.16 3.43 -59.79 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 1.05 Total: 25.94 kcal Atomic # 6 Polarization: -61.13 SS G_CDS: 3.26 Total: -57.87 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -2.90 Total: -70.03 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -63.22 3.43 -59.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.427 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds