Wall clock time and date at job start Mon Mar 30 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86796 * 119.99980 * 2 1 4 4 H 1.48509 * 109.46919 * 179.72414 * 3 2 1 5 5 H 1.48497 * 109.47255 * 299.72340 * 3 2 1 6 6 H 1.48499 * 109.47295 * 59.72873 * 3 2 1 7 7 C 1.40314 * 119.99679 * 179.72588 * 2 1 3 8 8 H 1.08001 * 119.99871 * 154.44956 * 7 2 1 9 9 C 1.40064 * 119.99940 * 334.44428 * 7 2 1 10 10 C 1.34074 * 118.65641 * 331.32377 * 9 7 2 11 11 C 1.50371 * 122.35192 * 180.22011 * 10 9 7 12 12 C 1.53064 * 109.73169 * 343.77249 * 11 10 9 13 13 N 1.47177 * 108.62819 * 49.38758 * 12 11 10 14 14 C 1.46904 * 110.99369 * 53.47371 * 13 12 11 15 15 C 1.50705 * 109.46540 * 170.82179 * 14 13 12 16 16 C 1.38241 * 119.99465 * 269.72419 * 15 14 13 17 17 C 1.38235 * 119.99404 * 179.81745 * 16 15 14 18 18 C 1.38227 * 120.00249 * 0.41171 * 17 16 15 19 19 C 1.38232 * 120.00153 * 359.81998 * 18 17 16 20 20 C 1.38233 * 120.00165 * 359.97438 * 19 18 17 21 21 C 1.46827 * 110.36524 * 289.97558 * 13 12 11 22 22 H 0.96992 * 119.99962 * 174.26572 * 1 2 3 23 23 H 1.08005 * 118.82605 * 0.48955 * 10 9 7 24 24 H 1.08998 * 109.58002 * 223.58028 * 11 10 9 25 25 H 1.08998 * 109.19955 * 103.71917 * 11 10 9 26 26 H 1.09001 * 109.60536 * 289.65195 * 12 11 10 27 27 H 1.08991 * 109.61145 * 169.13773 * 12 11 10 28 28 H 1.09000 * 109.47567 * 290.81634 * 14 13 12 29 29 H 1.08998 * 109.47371 * 50.82420 * 14 13 12 30 30 H 1.07997 * 119.99918 * 359.97438 * 16 15 14 31 31 H 1.08007 * 119.99710 * 180.21006 * 17 16 15 32 32 H 1.08010 * 120.00117 * 179.79445 * 18 17 16 33 33 H 1.08008 * 120.00277 * 179.97438 * 19 18 17 34 34 H 1.07994 * 120.00466 * 179.97438 * 20 19 18 35 35 H 1.08992 * 109.34164 * 291.37086 * 21 13 12 36 36 H 1.08997 * 109.34540 * 171.82156 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7010 1.3463 0.0067 5 1 1.8873 2.3935 -1.2158 6 1 1.8772 2.3993 1.2092 7 6 2.0085 -1.2152 0.0058 8 1 3.0092 -1.2629 -0.3974 9 6 1.4108 -2.3663 0.5346 10 6 0.4973 -2.2280 1.5061 11 6 -0.1921 -3.4066 2.1360 12 6 -0.0063 -4.6450 1.2559 13 7 1.4207 -4.7722 0.9186 14 6 2.2510 -4.7605 2.1305 15 6 3.6704 -5.1162 1.7701 16 6 4.0781 -6.4370 1.7893 17 6 5.3790 -6.7637 1.4552 18 6 6.2746 -5.7689 1.1100 19 6 5.8682 -4.4477 1.0955 20 6 4.5662 -4.1213 1.4255 21 6 1.8242 -3.7055 -0.0061 22 1 -0.4850 -0.8358 -0.0839 23 1 0.2443 -1.2344 1.8455 24 1 -1.2558 -3.1936 2.2426 25 1 0.2409 -3.5919 3.1190 26 1 -0.5898 -4.5351 0.3419 27 1 -0.3346 -5.5317 1.7981 28 1 2.2278 -3.7666 2.5773 29 1 1.8638 -5.4885 2.8433 30 1 3.3795 -7.2138 2.0630 31 1 5.6967 -7.7959 1.4669 32 1 7.2920 -6.0238 0.8521 33 1 6.5681 -3.6704 0.8262 34 1 4.2488 -3.0892 1.4145 35 1 1.3484 -3.8670 -0.9732 36 1 2.9068 -3.7261 -0.1307 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260356782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:10 Heat of formation + Delta-G solvation = 32.296218 kcal Electronic energy + Delta-G solvation = -17453.459059 eV Core-core repulsion = 14901.917049 eV Total energy + Delta-G solvation = -2551.542010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.42952 -37.91597 -34.39389 -32.02110 -30.66590 -29.91295 -29.67780 -26.05116 -24.91557 -22.57087 -22.09399 -21.42121 -20.50675 -18.09237 -16.73810 -15.95260 -15.07037 -15.01744 -14.79351 -14.06889 -14.01548 -13.40828 -13.14825 -13.07624 -12.74350 -12.35435 -12.21284 -11.63044 -11.45513 -11.18674 -10.96546 -10.77287 -10.63077 -10.43113 -10.32486 -10.29339 -10.06601 -9.15028 -8.78259 -8.59176 -8.43604 -7.56833 -7.29258 -6.86551 -4.18569 1.65476 1.71163 3.19112 3.26462 3.43474 3.91573 4.05673 4.20708 4.87092 5.14785 5.18082 5.19970 5.30099 5.45925 5.70886 5.78195 5.84207 5.96617 6.08312 6.22309 6.24490 6.36375 6.41152 6.46862 6.58484 6.69907 6.73366 6.75849 6.81900 6.87568 7.04750 7.26741 7.31941 7.63049 7.76544 7.92587 8.06863 8.26703 8.80801 8.98367 9.34774 10.39724 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.007909 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.133960 B = 3539.607450 C = 4511.481068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.044 3.956 3 Si 1.061 2.939 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.387 4.387 11 C -0.079 4.079 12 C 0.058 3.942 13 N -0.527 5.527 14 C 0.087 3.913 15 C -0.065 4.065 16 C -0.106 4.106 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.106 4.106 21 C 0.083 3.917 22 H 0.298 0.702 23 H 0.090 0.910 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -8.872 2.620 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.176 4.176 3 Si 0.886 3.114 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.079 0.921 9 C 0.019 3.981 10 C -0.408 4.408 11 C -0.117 4.117 12 C -0.070 4.070 13 N -0.249 5.249 14 C -0.041 4.041 15 C -0.065 4.065 16 C -0.125 4.125 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.124 4.124 21 C -0.044 4.044 22 H 0.111 0.889 23 H 0.108 0.892 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.931 -7.718 2.425 10.653 hybrid contribution -0.035 -0.751 0.262 0.797 sum 6.896 -8.470 2.688 11.248 Atomic orbital electron populations 1.70276 1.08252 1.34206 1.31314 1.26693 0.95713 1.03488 0.91722 0.83738 0.75548 0.74460 0.77614 1.20543 1.20877 1.20461 1.20120 1.02802 0.94963 1.39977 0.92115 1.18542 0.94306 0.92817 0.92481 1.21709 1.14470 0.96026 1.08626 1.20471 0.98515 0.95420 0.97298 1.22129 0.88983 0.96636 0.99281 1.62835 1.02793 1.45993 1.13229 1.21041 0.89080 1.01223 0.92720 1.19910 0.95470 0.93126 0.98003 1.20994 0.95658 0.95787 1.00015 1.21041 0.93930 0.98819 1.00926 1.21047 0.99260 0.93217 1.01285 1.21124 0.96206 0.96276 1.00564 1.21330 0.93085 1.00123 0.97865 1.21202 1.00191 0.88281 0.94736 0.88859 0.89245 0.94490 0.94869 0.91505 0.92382 0.92000 0.91349 0.86447 0.86678 0.86745 0.86416 0.85295 0.91658 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.96 12.33 55.57 0.68 -22.28 16 2 C 0.04 1.18 4.76 -17.26 -0.08 1.09 16 3 Si 1.06 23.19 30.01 -169.99 -5.10 18.09 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.55 -14.80 8.87 -38.12 -0.34 -15.14 16 8 H 0.06 1.62 7.97 -52.49 -0.42 1.20 16 9 C 0.02 0.56 4.69 -105.63 -0.50 0.06 16 10 C -0.39 -9.90 7.29 -35.93 -0.26 -10.16 16 11 C -0.08 -1.69 5.54 -28.01 -0.16 -1.85 16 12 C 0.06 1.12 6.02 -3.64 -0.02 1.10 16 13 N -0.53 -10.44 5.01 -237.60 -1.19 -11.63 16 14 C 0.09 1.60 4.17 -4.97 -0.02 1.58 16 15 C -0.06 -1.11 4.92 -104.62 -0.51 -1.62 16 16 C -0.11 -1.58 9.70 -39.58 -0.38 -1.97 16 17 C -0.13 -1.72 10.05 -39.59 -0.40 -2.12 16 18 C -0.13 -1.74 10.05 -39.59 -0.40 -2.13 16 19 C -0.12 -1.85 10.05 -39.59 -0.40 -2.24 16 20 C -0.11 -1.83 7.85 -39.58 -0.31 -2.14 16 21 C 0.08 1.86 5.42 -5.25 -0.03 1.83 16 22 H 0.30 8.58 6.85 -40.82 -0.28 8.30 16 23 H 0.09 2.58 6.28 -52.48 -0.33 2.25 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.69 7.10 -51.93 -0.37 0.32 16 26 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.29 5.89 -51.93 -0.31 0.99 16 29 H 0.07 1.13 8.03 -51.93 -0.42 0.72 16 30 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.13 2.47 7.83 -52.49 -0.41 2.06 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.07 1.57 5.35 -51.93 -0.28 1.29 16 LS Contribution 288.08 15.07 4.34 4.34 Total: -1.00 -27.97 288.08 -10.05 -38.02 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.98 Total: 7.18 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: -3.81 Total: -33.72 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: -0.51 Total: -33.91 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.10 Total: 18.09 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.97 -10.05 -38.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.317 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds