Wall clock time and date at job start Mon Mar 30 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86796 * 119.99980 * 2 1 4 4 H 1.48509 * 109.46919 * 179.72414 * 3 2 1 5 5 H 1.48497 * 109.47255 * 299.72340 * 3 2 1 6 6 H 1.48499 * 109.47295 * 59.72873 * 3 2 1 7 7 C 1.40314 * 119.99679 * 179.72588 * 2 1 3 8 8 H 1.08001 * 119.99871 * 154.44956 * 7 2 1 9 9 C 1.40064 * 119.99940 * 334.44428 * 7 2 1 10 10 C 1.34074 * 118.65641 * 331.32377 * 9 7 2 11 11 C 1.50371 * 122.35192 * 180.22011 * 10 9 7 12 12 C 1.53064 * 109.73169 * 343.77249 * 11 10 9 13 13 N 1.47177 * 108.62819 * 49.38758 * 12 11 10 14 14 C 1.46904 * 110.99369 * 53.47371 * 13 12 11 15 15 C 1.50705 * 109.46540 * 170.82179 * 14 13 12 16 16 C 1.38241 * 119.99465 * 269.72419 * 15 14 13 17 17 C 1.38235 * 119.99404 * 179.81745 * 16 15 14 18 18 C 1.38227 * 120.00249 * 0.41171 * 17 16 15 19 19 C 1.38232 * 120.00153 * 359.81998 * 18 17 16 20 20 C 1.38233 * 120.00165 * 359.97438 * 19 18 17 21 21 C 1.46827 * 110.36524 * 289.97558 * 13 12 11 22 22 H 0.96992 * 119.99962 * 174.26572 * 1 2 3 23 23 H 1.08005 * 118.82605 * 0.48955 * 10 9 7 24 24 H 1.08998 * 109.58002 * 223.58028 * 11 10 9 25 25 H 1.08998 * 109.19955 * 103.71917 * 11 10 9 26 26 H 1.09001 * 109.60536 * 289.65195 * 12 11 10 27 27 H 1.08991 * 109.61145 * 169.13773 * 12 11 10 28 28 H 1.09000 * 109.47567 * 290.81634 * 14 13 12 29 29 H 1.08998 * 109.47371 * 50.82420 * 14 13 12 30 30 H 1.07997 * 119.99918 * 359.97438 * 16 15 14 31 31 H 1.08007 * 119.99710 * 180.21006 * 17 16 15 32 32 H 1.08010 * 120.00117 * 179.79445 * 18 17 16 33 33 H 1.08008 * 120.00277 * 179.97438 * 19 18 17 34 34 H 1.07994 * 120.00466 * 179.97438 * 20 19 18 35 35 H 1.08992 * 109.34164 * 291.37086 * 21 13 12 36 36 H 1.08997 * 109.34540 * 171.82156 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7010 1.3463 0.0067 5 1 1.8873 2.3935 -1.2158 6 1 1.8772 2.3993 1.2092 7 6 2.0085 -1.2152 0.0058 8 1 3.0092 -1.2629 -0.3974 9 6 1.4108 -2.3663 0.5346 10 6 0.4973 -2.2280 1.5061 11 6 -0.1921 -3.4066 2.1360 12 6 -0.0063 -4.6450 1.2559 13 7 1.4207 -4.7722 0.9186 14 6 2.2510 -4.7605 2.1305 15 6 3.6704 -5.1162 1.7701 16 6 4.0781 -6.4370 1.7893 17 6 5.3790 -6.7637 1.4552 18 6 6.2746 -5.7689 1.1100 19 6 5.8682 -4.4477 1.0955 20 6 4.5662 -4.1213 1.4255 21 6 1.8242 -3.7055 -0.0061 22 1 -0.4850 -0.8358 -0.0839 23 1 0.2443 -1.2344 1.8455 24 1 -1.2558 -3.1936 2.2426 25 1 0.2409 -3.5919 3.1190 26 1 -0.5898 -4.5351 0.3419 27 1 -0.3346 -5.5317 1.7981 28 1 2.2278 -3.7666 2.5773 29 1 1.8638 -5.4885 2.8433 30 1 3.3795 -7.2138 2.0630 31 1 5.6967 -7.7959 1.4669 32 1 7.2920 -6.0238 0.8521 33 1 6.5681 -3.6704 0.8262 34 1 4.2488 -3.0892 1.4145 35 1 1.3484 -3.8670 -0.9732 36 1 2.9068 -3.7261 -0.1307 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260356782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:10 Heat of formation + Delta-G solvation = 16.863211 kcal Electronic energy + Delta-G solvation = -17454.128284 eV Core-core repulsion = 14901.917049 eV Total energy + Delta-G solvation = -2552.211235 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88262 -39.36691 -36.33233 -33.48248 -32.04440 -31.57892 -31.30169 -27.53308 -26.89118 -24.20400 -23.34660 -23.06215 -21.95307 -20.01070 -18.36705 -17.34886 -16.71152 -16.45568 -16.13258 -15.83025 -15.51666 -15.04129 -14.98845 -14.62297 -14.15455 -13.71685 -13.53134 -13.26702 -13.13324 -12.91781 -12.73696 -12.42594 -12.12988 -12.01791 -11.95276 -11.77126 -11.71492 -11.06183 -10.80136 -9.75424 -9.66282 -9.44999 -9.25187 -8.89029 -6.32900 0.48638 0.55905 1.36775 1.45125 1.71991 1.95634 2.35593 2.83598 3.12467 3.34136 3.91010 4.02529 4.16938 4.22340 4.31307 4.37918 4.45593 4.55624 4.60885 4.68062 4.71977 4.81615 4.88269 4.91278 4.96121 5.13285 5.18005 5.23409 5.38365 5.62157 5.66457 5.73453 5.77913 5.84159 6.01597 6.12826 6.15678 6.21869 6.75362 6.91332 7.30054 8.23318 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.007909 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.133960 B = 3539.607450 C = 4511.481068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.003 3.997 3 Si 1.110 2.890 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.578 4.578 8 H 0.056 0.944 9 C 0.011 3.989 10 C -0.389 4.389 11 C -0.076 4.076 12 C 0.061 3.939 13 N -0.517 5.517 14 C 0.093 3.907 15 C -0.085 4.085 16 C -0.109 4.109 17 C -0.123 4.123 18 C -0.124 4.124 19 C -0.131 4.131 20 C -0.131 4.131 21 C 0.094 3.906 22 H 0.281 0.719 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.663 -11.023 2.859 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.212 4.212 3 Si 0.929 3.071 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.609 4.609 8 H 0.074 0.926 9 C 0.008 3.992 10 C -0.410 4.410 11 C -0.114 4.114 12 C -0.067 4.067 13 N -0.239 5.239 14 C -0.035 4.035 15 C -0.086 4.086 16 C -0.127 4.127 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.034 4.034 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.154 0.846 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.474 -9.892 2.666 13.295 hybrid contribution -0.475 -0.158 0.239 0.555 sum 7.999 -10.050 2.905 13.169 Atomic orbital electron populations 1.70407 1.09021 1.33055 1.33819 1.28116 0.95776 1.06984 0.90282 0.83111 0.75048 0.70671 0.78222 1.19001 1.19281 1.20062 1.20399 1.02907 0.96354 1.41193 0.92619 1.18849 0.93983 0.94222 0.92175 1.21790 1.14655 0.95918 1.08681 1.20458 0.98208 0.94865 0.97870 1.22196 0.88700 0.96892 0.98906 1.62877 1.03276 1.44038 1.13676 1.21013 0.90211 1.00067 0.92183 1.19857 0.94572 0.94330 0.99811 1.21226 0.96978 0.94892 0.99599 1.21479 0.92995 1.00616 0.98941 1.21454 1.00908 0.92179 0.99623 1.21333 0.95332 0.97923 1.00343 1.21184 0.94786 0.98702 1.00297 1.21001 1.00075 0.87448 0.94889 0.90689 0.93184 0.94010 0.93833 0.92194 0.88521 0.95370 0.88948 0.84586 0.83101 0.83381 0.85190 0.88753 0.92361 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.07 12.33 21.90 0.27 -48.80 16 2 C 0.00 0.15 4.76 85.37 0.41 0.55 16 3 Si 1.11 47.62 30.01 68.60 2.06 49.68 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.58 -32.57 8.87 23.22 0.21 -32.36 16 8 H 0.06 3.10 7.97 -2.91 -0.02 3.08 16 9 C 0.01 0.58 4.69 -20.52 -0.10 0.48 16 10 C -0.39 -20.71 7.29 24.63 0.18 -20.53 16 11 C -0.08 -3.25 5.54 29.77 0.17 -3.09 16 12 C 0.06 2.28 6.02 86.27 0.52 2.80 16 13 N -0.52 -20.12 5.01 -905.62 -4.54 -24.66 16 14 C 0.09 3.35 4.17 85.56 0.36 3.71 16 15 C -0.09 -2.85 4.92 -19.86 -0.10 -2.95 16 16 C -0.11 -2.92 9.70 22.27 0.22 -2.71 16 17 C -0.12 -2.77 10.05 22.27 0.22 -2.54 16 18 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 19 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 20 C -0.13 -4.61 7.85 22.27 0.17 -4.44 16 21 C 0.09 4.29 5.42 85.42 0.46 4.75 16 22 H 0.28 17.04 6.85 -92.71 -0.64 16.40 16 23 H 0.05 3.04 6.28 -2.91 -0.02 3.02 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.78 7.10 -2.39 -0.02 1.76 16 26 H 0.06 2.32 8.07 -2.39 -0.02 2.30 16 27 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.03 1.20 5.89 -2.39 -0.01 1.19 16 29 H 0.09 2.86 8.03 -2.39 -0.02 2.84 16 30 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.09 3.89 7.83 -2.91 -0.02 3.87 16 35 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 3.24 5.35 -2.39 -0.01 3.23 16 Total: -1.00 -63.26 288.08 2.14 -61.12 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 1.19 Total: 25.18 kcal Atomic # 6 Polarization: -65.68 SS G_CDS: 3.16 Total: -62.52 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -4.27 Total: -73.46 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.06 Total: 49.68 kcal Total: -63.26 2.14 -61.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.979 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds