Wall clock time and date at job start Mon Mar 30 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99668 * 2 1 4 4 H 1.48499 * 109.47263 * 240.00214 * 3 2 1 5 5 H 1.48495 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00024 * 3 2 1 7 7 C 1.37872 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99639 * 185.12417 * 7 2 1 9 9 C 1.50698 * 120.00273 * 5.12450 * 7 2 1 10 10 H 1.09008 * 109.38806 * 24.67761 * 9 7 2 11 11 C 1.52901 * 109.39073 * 264.87638 * 9 7 2 12 12 N 1.47159 * 108.50129 * 189.55915 * 11 9 7 13 13 C 1.46903 * 111.00503 * 307.84067 * 12 11 9 14 14 C 1.52990 * 117.50249 * 247.66670 * 13 12 11 15 15 C 1.52993 * 117.50273 * 179.04044 * 13 12 11 16 16 C 1.46625 * 110.25420 * 71.26982 * 12 11 9 17 17 C 1.50628 * 110.49121 * 307.46678 * 16 12 11 18 18 C 1.38735 * 118.42166 * 197.37143 * 17 16 12 19 19 C 1.38011 * 120.37658 * 180.18662 * 18 17 16 20 20 C 1.38266 * 119.86415 * 0.34249 * 19 18 17 21 21 C 1.38030 * 119.83121 * 359.41857 * 20 19 18 22 22 C 1.37830 * 121.84902 * 17.53869 * 17 16 12 23 23 H 0.96998 * 119.99611 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.62642 * 69.85640 * 11 9 7 25 25 H 1.08994 * 109.62990 * 309.26549 * 11 9 7 26 26 H 1.09002 * 115.54297 * 33.36882 * 13 12 11 27 27 H 1.09006 * 117.50093 * 359.97438 * 14 13 12 28 28 H 1.08998 * 117.50126 * 145.01820 * 14 13 12 29 29 H 1.08995 * 117.49884 * 214.98419 * 15 13 12 30 30 H 1.08999 * 117.49608 * 359.97438 * 15 13 12 31 31 H 1.09004 * 109.30314 * 187.15880 * 16 12 11 32 32 H 1.08999 * 109.13777 * 67.67321 * 16 12 11 33 33 H 1.08002 * 119.81252 * 0.21059 * 18 17 16 34 34 H 1.07999 * 120.06789 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.08075 * 179.67359 * 20 19 18 36 36 H 1.07995 * 119.82671 * 180.20845 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1958 0.0830 9 6 1.2557 -2.4965 -0.1177 10 1 0.3015 -2.3218 -0.6149 11 6 1.0036 -3.0645 1.2793 12 7 0.4825 -4.4337 1.1397 13 6 -0.6684 -4.4686 0.2274 14 6 -2.0361 -4.7989 0.8281 15 6 -1.3144 -5.8288 -0.0432 16 6 1.5435 -5.3363 0.6819 17 6 2.2011 -4.7908 -0.5586 18 6 2.9578 -5.6532 -1.3386 19 6 3.5812 -5.1953 -2.4815 20 6 3.4575 -3.8680 -2.8486 21 6 2.7009 -3.0097 -2.0764 22 6 2.0720 -3.4695 -0.9291 23 1 -0.4849 0.8401 0.0004 24 1 0.2726 -2.4458 1.7997 25 1 1.9376 -3.0836 1.8408 26 1 -0.6388 -3.7530 -0.5942 27 1 -2.0820 -4.9908 1.9001 28 1 -2.9067 -4.3007 0.4016 29 1 -1.7100 -6.0080 -1.0429 30 1 -0.8851 -6.6979 0.4552 31 1 1.1147 -6.3141 0.4619 32 1 2.2897 -5.4392 1.4697 33 1 3.0592 -6.6890 -1.0499 34 1 4.1687 -5.8711 -3.0852 35 1 3.9482 -3.5047 -3.7395 36 1 2.6016 -1.9738 -2.3649 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260361549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:02 Heat of formation + Delta-G solvation = 53.817568 kcal Electronic energy + Delta-G solvation = -17742.640055 eV Core-core repulsion = 15192.031281 eV Total energy + Delta-G solvation = -2550.608774 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.73214 -37.23512 -34.66648 -33.19036 -31.15274 -29.93324 -28.29960 -25.29182 -23.66985 -22.50491 -21.76506 -21.09526 -20.79165 -18.02240 -16.57600 -15.94145 -15.61195 -14.91651 -14.54720 -14.52028 -13.73838 -13.44509 -12.89387 -12.74380 -12.53231 -12.24918 -11.89017 -11.29660 -11.26563 -11.06688 -10.89494 -10.82301 -10.74003 -10.47897 -10.26127 -9.90872 -9.67777 -9.29961 -9.11083 -8.66947 -8.03911 -7.77472 -7.46726 -6.12245 -4.15192 2.05934 2.17652 3.26592 3.31976 3.34739 4.30284 4.33976 4.50038 4.60101 5.18217 5.40213 5.45763 5.49287 5.53261 5.67179 5.78747 5.81749 5.89253 6.01655 6.09782 6.20292 6.25186 6.42534 6.45606 6.53181 6.58959 6.71703 6.80310 6.94117 7.09428 7.18408 7.28307 7.49162 7.58527 7.73703 7.78142 7.90523 7.93756 8.32338 8.91310 9.47843 10.96026 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.010278 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.159296 B = 2723.485858 C = 3814.613659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.037 3.963 10 H 0.076 0.924 11 C 0.069 3.931 12 N -0.512 5.512 13 C 0.019 3.981 14 C -0.166 4.166 15 C -0.186 4.186 16 C 0.099 3.901 17 C -0.131 4.131 18 C -0.125 4.125 19 C -0.146 4.146 20 C -0.135 4.135 21 C -0.100 4.100 22 C -0.037 4.037 23 H 0.264 0.736 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -9.292 -1.607 9.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.017 3.983 10 H 0.094 0.906 11 C -0.058 4.058 12 N -0.233 5.233 13 C -0.090 4.090 14 C -0.204 4.204 15 C -0.223 4.223 16 C -0.029 4.029 17 C -0.132 4.132 18 C -0.144 4.144 19 C -0.164 4.164 20 C -0.153 4.153 21 C -0.118 4.118 22 C -0.037 4.037 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.624 -9.322 -1.100 9.407 hybrid contribution 0.895 1.243 -0.909 1.781 sum 1.519 -8.079 -2.009 8.462 Atomic orbital electron populations 1.69914 1.05904 1.27035 1.49686 1.24978 0.94851 0.99181 0.94559 0.86657 0.79642 0.82986 0.78782 1.20197 1.21258 1.20134 1.20886 0.93140 0.89567 1.51157 0.92568 1.18504 0.96333 0.91715 0.91710 0.90608 1.22435 0.98837 0.85263 0.99290 1.62544 1.05650 1.10623 1.44520 1.22535 0.90748 0.97906 0.97803 1.22958 0.95461 1.02577 0.99409 1.22981 1.05248 0.93535 1.00567 1.20988 0.93057 0.95949 0.92876 1.20462 1.00165 0.94262 0.98342 1.20878 0.99080 0.98654 0.95761 1.20814 1.01918 0.95809 0.97891 1.21059 1.00441 0.93948 0.99883 1.21284 0.96184 0.99889 0.94476 1.20482 0.95596 0.92838 0.94797 0.92655 0.90529 0.92178 0.88110 0.88770 0.89316 0.89483 0.89067 0.90876 0.90566 0.87442 0.87486 0.87322 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 12.83 55.43 0.71 -23.85 16 2 C 0.07 1.78 5.45 -17.82 -0.10 1.69 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.33 7.01 -34.44 -0.24 -13.57 16 8 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 9 C 0.04 0.88 1.71 -92.97 -0.16 0.72 16 10 H 0.08 2.02 5.58 -51.92 -0.29 1.73 16 11 C 0.07 1.53 5.34 -3.73 -0.02 1.51 16 12 N -0.51 -9.88 5.17 -228.22 -1.18 -11.06 16 13 C 0.02 0.35 4.51 -67.72 -0.31 0.05 16 14 C -0.17 -2.66 10.46 -26.74 -0.28 -2.94 16 15 C -0.19 -2.82 9.64 -26.74 -0.26 -3.08 16 16 C 0.10 1.74 5.46 -5.16 -0.03 1.72 16 17 C -0.13 -2.51 5.44 -104.62 -0.57 -3.08 16 18 C -0.13 -2.13 9.65 -39.48 -0.38 -2.51 16 19 C -0.15 -2.42 10.05 -39.65 -0.40 -2.82 16 20 C -0.14 -2.42 10.05 -39.65 -0.40 -2.82 16 21 C -0.10 -2.11 9.09 -39.50 -0.36 -2.47 16 22 C -0.04 -0.80 5.13 -104.60 -0.54 -1.34 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 25 H 0.06 1.35 8.02 -51.93 -0.42 0.93 16 26 H 0.10 2.16 5.62 -51.93 -0.29 1.87 16 27 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.30 7.25 -51.93 -0.38 0.92 16 31 H 0.07 1.14 6.53 -51.93 -0.34 0.81 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.13 2.78 7.37 -52.49 -0.39 2.40 16 LS Contribution 289.22 15.07 4.36 4.36 Total: -1.00 -26.92 289.22 -10.19 -37.11 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.03 Total: 6.66 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -4.03 Total: -28.93 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.47 Total: -34.91 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.92 -10.19 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260361549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.931 kcal (2) G-P(sol) polarization free energy of solvation -26.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds