Wall clock time and date at job start Mon Mar 30 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99668 * 2 1 4 4 H 1.48499 * 109.47263 * 240.00214 * 3 2 1 5 5 H 1.48495 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00024 * 3 2 1 7 7 C 1.37872 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99639 * 185.12417 * 7 2 1 9 9 C 1.50698 * 120.00273 * 5.12450 * 7 2 1 10 10 H 1.09008 * 109.38806 * 24.67761 * 9 7 2 11 11 C 1.52901 * 109.39073 * 264.87638 * 9 7 2 12 12 N 1.47159 * 108.50129 * 189.55915 * 11 9 7 13 13 C 1.46903 * 111.00503 * 307.84067 * 12 11 9 14 14 C 1.52990 * 117.50249 * 247.66670 * 13 12 11 15 15 C 1.52993 * 117.50273 * 179.04044 * 13 12 11 16 16 C 1.46625 * 110.25420 * 71.26982 * 12 11 9 17 17 C 1.50628 * 110.49121 * 307.46678 * 16 12 11 18 18 C 1.38735 * 118.42166 * 197.37143 * 17 16 12 19 19 C 1.38011 * 120.37658 * 180.18662 * 18 17 16 20 20 C 1.38266 * 119.86415 * 0.34249 * 19 18 17 21 21 C 1.38030 * 119.83121 * 359.41857 * 20 19 18 22 22 C 1.37830 * 121.84902 * 17.53869 * 17 16 12 23 23 H 0.96998 * 119.99611 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.62642 * 69.85640 * 11 9 7 25 25 H 1.08994 * 109.62990 * 309.26549 * 11 9 7 26 26 H 1.09002 * 115.54297 * 33.36882 * 13 12 11 27 27 H 1.09006 * 117.50093 * 359.97438 * 14 13 12 28 28 H 1.08998 * 117.50126 * 145.01820 * 14 13 12 29 29 H 1.08995 * 117.49884 * 214.98419 * 15 13 12 30 30 H 1.08999 * 117.49608 * 359.97438 * 15 13 12 31 31 H 1.09004 * 109.30314 * 187.15880 * 16 12 11 32 32 H 1.08999 * 109.13777 * 67.67321 * 16 12 11 33 33 H 1.08002 * 119.81252 * 0.21059 * 18 17 16 34 34 H 1.07999 * 120.06789 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.08075 * 179.67359 * 20 19 18 36 36 H 1.07995 * 119.82671 * 180.20845 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1958 0.0830 9 6 1.2557 -2.4965 -0.1177 10 1 0.3015 -2.3218 -0.6149 11 6 1.0036 -3.0645 1.2793 12 7 0.4825 -4.4337 1.1397 13 6 -0.6684 -4.4686 0.2274 14 6 -2.0361 -4.7989 0.8281 15 6 -1.3144 -5.8288 -0.0432 16 6 1.5435 -5.3363 0.6819 17 6 2.2011 -4.7908 -0.5586 18 6 2.9578 -5.6532 -1.3386 19 6 3.5812 -5.1953 -2.4815 20 6 3.4575 -3.8680 -2.8486 21 6 2.7009 -3.0097 -2.0764 22 6 2.0720 -3.4695 -0.9291 23 1 -0.4849 0.8401 0.0004 24 1 0.2726 -2.4458 1.7997 25 1 1.9376 -3.0836 1.8408 26 1 -0.6388 -3.7530 -0.5942 27 1 -2.0820 -4.9908 1.9001 28 1 -2.9067 -4.3007 0.4016 29 1 -1.7100 -6.0080 -1.0429 30 1 -0.8851 -6.6979 0.4552 31 1 1.1147 -6.3141 0.4619 32 1 2.2897 -5.4392 1.4697 33 1 3.0592 -6.6890 -1.0499 34 1 4.1687 -5.8711 -3.0852 35 1 3.9482 -3.5047 -3.7395 36 1 2.6016 -1.9738 -2.3649 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260361549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:01 Heat of formation + Delta-G solvation = 39.102933 kcal Electronic energy + Delta-G solvation = -17743.278130 eV Core-core repulsion = 15192.031281 eV Total energy + Delta-G solvation = -2551.246849 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25364 -38.64882 -36.25468 -34.93238 -32.89165 -31.41747 -29.90671 -27.12379 -25.25645 -24.11483 -23.06578 -22.58465 -22.33855 -19.56416 -18.52002 -17.51318 -17.05241 -16.53529 -16.28181 -16.02054 -15.20754 -14.95928 -14.55975 -14.38791 -13.99947 -13.76214 -13.53523 -12.96808 -12.80900 -12.73091 -12.55211 -12.41644 -12.22420 -12.15317 -11.95563 -11.42469 -11.17296 -11.01482 -10.87481 -10.63302 -9.48715 -9.32361 -9.07264 -8.17134 -6.25825 0.61177 0.71150 1.37974 1.38200 1.46420 2.38333 2.97583 3.02224 3.08075 3.14843 4.05857 4.11310 4.13164 4.25561 4.30789 4.33213 4.42657 4.44416 4.67294 4.70463 4.78776 4.81064 4.92814 4.96975 5.02442 5.17236 5.25582 5.35152 5.36604 5.43915 5.55066 5.69469 5.71688 5.76815 5.94818 6.19049 6.32708 6.35260 6.42623 6.86362 7.38816 8.90041 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.010278 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.159296 B = 2723.485858 C = 3814.613659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.045 0.955 9 C 0.044 3.956 10 H 0.037 0.963 11 C 0.083 3.917 12 N -0.505 5.505 13 C -0.015 4.015 14 C -0.163 4.163 15 C -0.152 4.152 16 C 0.097 3.903 17 C -0.137 4.137 18 C -0.119 4.119 19 C -0.135 4.135 20 C -0.135 4.135 21 C -0.129 4.129 22 C -0.069 4.069 23 H 0.263 0.737 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -12.159 -2.111 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.555 4.555 8 H 0.064 0.936 9 C 0.024 3.976 10 H 0.055 0.945 11 C -0.045 4.045 12 N -0.225 5.225 13 C -0.124 4.124 14 C -0.201 4.201 15 C -0.189 4.189 16 C -0.030 4.030 17 C -0.139 4.139 18 C -0.137 4.137 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.070 4.070 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.151 0.849 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.838 -12.200 -1.606 12.442 hybrid contribution 0.541 2.049 -0.813 2.270 sum 2.379 -10.151 -2.419 10.704 Atomic orbital electron populations 1.70045 1.07190 1.27512 1.51092 1.25685 0.95570 1.02247 0.94528 0.85729 0.78507 0.79304 0.78890 1.19738 1.20861 1.19587 1.21135 0.92723 0.91213 1.50452 0.93644 1.18255 0.94789 0.91916 0.92608 0.94535 1.22019 0.97518 0.87082 0.97836 1.62526 1.06393 1.08640 1.44977 1.22415 0.91886 1.00293 0.97805 1.23033 0.94161 1.02815 1.00068 1.23077 1.02485 0.92155 1.01179 1.21185 0.92836 0.96457 0.92556 1.20653 1.00610 0.93337 0.99288 1.21305 0.97341 1.00030 0.95033 1.21296 1.00863 0.95419 0.97715 1.21328 0.99402 0.94472 1.00059 1.21201 0.98420 0.99400 0.95666 1.20316 0.97101 0.94001 0.95547 0.92835 0.93737 0.92753 0.91958 0.88174 0.88913 0.88055 0.86997 0.87883 0.89561 0.83495 0.83324 0.84878 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 12.83 21.45 0.28 -53.55 16 2 C 0.02 1.06 5.45 84.65 0.46 1.52 16 3 Si 0.95 44.07 29.54 68.60 2.03 46.09 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.52 -28.64 7.01 25.60 0.18 -28.46 16 8 H 0.05 2.55 7.82 -2.91 -0.02 2.52 16 9 C 0.04 2.23 1.71 -12.31 -0.02 2.21 16 10 H 0.04 2.14 5.58 -2.38 -0.01 2.12 16 11 C 0.08 3.92 5.34 86.22 0.46 4.38 16 12 N -0.50 -19.47 5.17 -875.94 -4.53 -24.00 16 13 C -0.01 -0.56 4.51 44.91 0.20 -0.36 16 14 C -0.16 -5.09 10.46 30.59 0.32 -4.77 16 15 C -0.15 -4.21 9.64 30.59 0.29 -3.91 16 16 C 0.10 3.20 5.46 85.59 0.47 3.67 16 17 C -0.14 -5.05 5.44 -19.86 -0.11 -5.16 16 18 C -0.12 -3.54 9.65 22.33 0.22 -3.33 16 19 C -0.14 -3.90 10.05 22.22 0.22 -3.68 16 20 C -0.13 -4.58 10.05 22.23 0.22 -4.36 16 21 C -0.13 -5.55 9.09 22.33 0.20 -5.35 16 22 C -0.07 -3.10 5.13 -19.85 -0.10 -3.20 16 23 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 24 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 2.54 8.02 -2.39 -0.02 2.53 16 26 H 0.06 2.86 5.62 -2.39 -0.01 2.84 16 27 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 28 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.11 2.67 7.25 -2.39 -0.02 2.66 16 31 H 0.10 2.78 6.53 -2.38 -0.02 2.76 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.10 4.60 7.37 -2.91 -0.02 4.58 16 Total: -1.00 -62.21 289.22 1.85 -60.35 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 1.06 Total: 21.89 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 3.02 Total: -50.79 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -4.25 Total: -77.55 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -62.21 1.85 -60.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260361549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.458 kcal (2) G-P(sol) polarization free energy of solvation -62.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds