Wall clock time and date at job start Mon Mar 30 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48500 * 109.47188 * 240.00357 * 3 2 1 5 5 H 1.48495 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46801 * 120.00454 * 3 2 1 7 7 C 1.37875 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00038 * 185.71694 * 7 2 1 9 9 C 1.50697 * 120.00188 * 5.72805 * 7 2 1 10 10 H 1.09001 * 109.39101 * 334.85604 * 9 7 2 11 11 C 1.52887 * 109.39420 * 94.56741 * 9 7 2 12 12 N 1.47169 * 108.51193 * 170.55919 * 11 9 7 13 13 C 1.46903 * 110.99988 * 52.18730 * 12 11 9 14 14 C 1.52998 * 117.49664 * 243.75134 * 13 12 11 15 15 C 1.52995 * 117.50121 * 175.08626 * 13 12 11 16 16 C 1.46627 * 110.25560 * 288.75931 * 12 11 9 17 17 C 1.50629 * 110.49586 * 52.55127 * 16 12 11 18 18 C 1.38729 * 118.43040 * 162.60036 * 17 16 12 19 19 C 1.38016 * 120.37245 * 179.55291 * 18 17 16 20 20 C 1.38260 * 119.87477 * 0.03301 * 19 18 17 21 21 C 1.38037 * 119.82399 * 0.09143 * 20 19 18 22 22 C 1.37834 * 121.84193 * 342.34038 * 17 16 12 23 23 H 0.96993 * 120.00462 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.63121 * 290.26509 * 11 9 7 25 25 H 1.08996 * 109.63307 * 50.85428 * 11 9 7 26 26 H 1.09005 * 115.54605 * 29.41235 * 13 12 11 27 27 H 1.09001 * 117.49916 * 359.97438 * 14 13 12 28 28 H 1.08994 * 117.49887 * 145.02145 * 14 13 12 29 29 H 1.08994 * 117.50331 * 214.98051 * 15 13 12 30 30 H 1.09005 * 117.49685 * 359.97438 * 15 13 12 31 31 H 1.09007 * 109.26779 * 172.80336 * 16 12 11 32 32 H 1.08996 * 109.27954 * 292.28256 * 16 12 11 33 33 H 1.07997 * 119.81275 * 359.83256 * 18 17 16 34 34 H 1.08007 * 120.06088 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.08672 * 180.11843 * 20 19 18 36 36 H 1.08002 * 119.82406 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0805 -1.1965 0.0926 9 6 1.2567 -2.4958 -0.1314 10 1 0.2353 -2.3639 0.2256 11 6 1.2282 -2.9196 -1.6001 12 7 0.6998 -4.2908 -1.6806 13 6 -0.5791 -4.4049 -0.9669 14 6 -0.6286 -5.3304 0.2503 15 6 -1.3192 -5.7412 -1.0526 16 6 1.6817 -5.2448 -1.1555 17 6 2.1342 -4.8322 0.2207 18 6 2.7644 -5.7754 1.0192 19 6 3.2036 -5.4381 2.2834 20 6 3.0145 -4.1535 2.7582 21 6 2.3854 -3.2144 1.9658 22 6 1.9430 -3.5525 0.6958 23 1 -0.4850 0.8399 0.0004 24 1 0.5834 -2.2450 -2.1634 25 1 2.2382 -2.8918 -2.0089 26 1 -1.1816 -3.4971 -0.9338 27 1 0.2877 -5.8550 0.5214 28 1 -1.2640 -5.0319 1.0841 29 1 -2.4085 -5.7127 -1.0755 30 1 -0.8573 -6.5356 -1.6390 31 1 1.2288 -6.2350 -1.1033 32 1 2.5431 -5.2785 -1.8225 33 1 2.9162 -6.7781 0.6478 34 1 3.6940 -6.1764 2.9006 35 1 3.3586 -3.8853 3.7461 36 1 2.2373 -2.2110 2.3369 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260361553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:04 Heat of formation + Delta-G solvation = 58.763405 kcal Electronic energy + Delta-G solvation = -17974.509469 eV Core-core repulsion = 15424.115162 eV Total energy + Delta-G solvation = -2550.394307 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.08761 -37.23363 -34.58273 -32.96023 -31.16560 -30.11908 -28.28019 -25.33603 -23.77863 -22.32949 -21.88618 -21.09932 -20.59459 -18.17101 -16.49095 -16.09739 -15.67179 -15.18518 -14.60537 -14.37846 -13.67471 -13.10410 -12.90622 -12.73936 -12.53324 -12.16096 -11.76063 -11.35364 -11.28120 -11.04344 -10.93498 -10.86158 -10.79774 -10.50976 -10.28046 -10.03458 -9.74978 -9.34335 -9.14578 -8.66930 -8.01443 -7.70271 -7.42808 -6.12906 -4.15443 2.05304 2.18626 3.26300 3.31759 3.34753 4.26508 4.33849 4.53863 4.75444 5.17466 5.32718 5.45570 5.48668 5.51997 5.65002 5.66434 5.77447 5.86251 6.05723 6.07950 6.18868 6.31083 6.42511 6.48259 6.55390 6.58812 6.70269 6.78754 6.92100 7.06971 7.15908 7.27163 7.51922 7.55228 7.72812 7.76689 7.88997 7.91524 8.32361 8.92037 9.47326 10.95267 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.009939 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.057501 B = 2816.461676 C = 3623.879410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.037 3.963 10 H 0.080 0.920 11 C 0.064 3.936 12 N -0.508 5.508 13 C 0.040 3.960 14 C -0.216 4.216 15 C -0.186 4.186 16 C 0.094 3.906 17 C -0.127 4.127 18 C -0.130 4.130 19 C -0.145 4.145 20 C -0.135 4.135 21 C -0.099 4.099 22 C -0.029 4.029 23 H 0.264 0.736 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.119 0.881 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 -9.308 0.826 9.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.017 3.983 10 H 0.098 0.902 11 C -0.062 4.062 12 N -0.227 5.227 13 C -0.070 4.070 14 C -0.255 4.255 15 C -0.224 4.224 16 C -0.035 4.035 17 C -0.129 4.129 18 C -0.148 4.148 19 C -0.164 4.164 20 C -0.153 4.153 21 C -0.117 4.117 22 C -0.029 4.029 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.002 -9.271 0.269 9.329 hybrid contribution 0.697 1.099 1.032 1.661 sum 1.699 -8.172 1.301 8.447 Atomic orbital electron populations 1.69879 1.05933 1.27049 1.49909 1.24966 0.94837 0.99207 0.94454 0.86658 0.79652 0.82972 0.78797 1.20075 1.21264 1.20233 1.20910 0.93211 0.89664 1.50992 0.92621 1.18545 0.98380 0.90915 0.90415 0.90195 1.22537 0.98911 0.85561 0.99238 1.62570 1.01710 1.07465 1.50966 1.22505 0.93765 0.94166 0.96543 1.23649 1.03280 1.06224 0.92298 1.23068 0.98728 0.99591 1.00998 1.21054 0.95258 0.96134 0.91025 1.20344 1.00888 0.94279 0.97372 1.20854 1.00726 0.98484 0.94784 1.20792 1.02760 0.96488 0.96320 1.21054 1.00957 0.93877 0.99449 1.21290 0.97021 0.99372 0.94025 1.20400 0.94551 0.93269 0.94695 0.92637 0.90761 0.92024 0.86296 0.87666 0.89668 0.89307 0.89354 0.90877 0.90464 0.87486 0.87517 0.87356 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 12.77 55.43 0.71 -23.77 16 2 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.24 7.01 -34.44 -0.24 -13.48 16 8 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 9 C 0.04 0.87 1.87 -92.97 -0.17 0.70 16 10 H 0.08 2.12 6.14 -51.93 -0.32 1.80 16 11 C 0.06 1.41 5.27 -3.73 -0.02 1.39 16 12 N -0.51 -9.70 5.23 -228.21 -1.19 -10.89 16 13 C 0.04 0.74 4.57 -67.71 -0.31 0.43 16 14 C -0.22 -3.67 8.57 -26.69 -0.23 -3.90 16 15 C -0.19 -2.84 9.97 -26.69 -0.27 -3.10 16 16 C 0.09 1.63 5.07 -5.16 -0.03 1.60 16 17 C -0.13 -2.39 3.43 -104.62 -0.36 -2.75 16 18 C -0.13 -2.17 9.16 -39.48 -0.36 -2.53 16 19 C -0.15 -2.39 10.05 -39.65 -0.40 -2.78 16 20 C -0.14 -2.41 10.05 -39.65 -0.40 -2.81 16 21 C -0.10 -2.07 9.09 -39.49 -0.36 -2.43 16 22 C -0.03 -0.62 4.85 -104.60 -0.51 -1.12 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 25 H 0.06 1.35 8.02 -51.93 -0.42 0.94 16 26 H 0.12 2.40 7.59 -51.93 -0.39 2.01 16 27 H 0.11 1.82 4.38 -51.93 -0.23 1.59 16 28 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.27 7.63 -51.93 -0.40 0.88 16 31 H 0.07 1.14 6.14 -51.92 -0.32 0.83 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.13 2.81 7.37 -52.49 -0.39 2.42 16 LS Contribution 283.41 15.07 4.27 4.27 Total: -1.00 -26.55 283.41 -9.95 -36.50 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.96 Total: 7.37 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -3.75 Total: -29.11 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.49 Total: -34.66 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.55 -9.95 -36.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260361553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.260 kcal (2) G-P(sol) polarization free energy of solvation -26.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds