Wall clock time and date at job start Mon Mar 30 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48500 * 109.47188 * 240.00357 * 3 2 1 5 5 H 1.48495 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46801 * 120.00454 * 3 2 1 7 7 C 1.37875 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00038 * 185.71694 * 7 2 1 9 9 C 1.50697 * 120.00188 * 5.72805 * 7 2 1 10 10 H 1.09001 * 109.39101 * 334.85604 * 9 7 2 11 11 C 1.52887 * 109.39420 * 94.56741 * 9 7 2 12 12 N 1.47169 * 108.51193 * 170.55919 * 11 9 7 13 13 C 1.46903 * 110.99988 * 52.18730 * 12 11 9 14 14 C 1.52998 * 117.49664 * 243.75134 * 13 12 11 15 15 C 1.52995 * 117.50121 * 175.08626 * 13 12 11 16 16 C 1.46627 * 110.25560 * 288.75931 * 12 11 9 17 17 C 1.50629 * 110.49586 * 52.55127 * 16 12 11 18 18 C 1.38729 * 118.43040 * 162.60036 * 17 16 12 19 19 C 1.38016 * 120.37245 * 179.55291 * 18 17 16 20 20 C 1.38260 * 119.87477 * 0.03301 * 19 18 17 21 21 C 1.38037 * 119.82399 * 0.09143 * 20 19 18 22 22 C 1.37834 * 121.84193 * 342.34038 * 17 16 12 23 23 H 0.96993 * 120.00462 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.63121 * 290.26509 * 11 9 7 25 25 H 1.08996 * 109.63307 * 50.85428 * 11 9 7 26 26 H 1.09005 * 115.54605 * 29.41235 * 13 12 11 27 27 H 1.09001 * 117.49916 * 359.97438 * 14 13 12 28 28 H 1.08994 * 117.49887 * 145.02145 * 14 13 12 29 29 H 1.08994 * 117.50331 * 214.98051 * 15 13 12 30 30 H 1.09005 * 117.49685 * 359.97438 * 15 13 12 31 31 H 1.09007 * 109.26779 * 172.80336 * 16 12 11 32 32 H 1.08996 * 109.27954 * 292.28256 * 16 12 11 33 33 H 1.07997 * 119.81275 * 359.83256 * 18 17 16 34 34 H 1.08007 * 120.06088 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.08672 * 180.11843 * 20 19 18 36 36 H 1.08002 * 119.82406 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0805 -1.1965 0.0926 9 6 1.2567 -2.4958 -0.1314 10 1 0.2353 -2.3639 0.2256 11 6 1.2282 -2.9196 -1.6001 12 7 0.6998 -4.2908 -1.6806 13 6 -0.5791 -4.4049 -0.9669 14 6 -0.6286 -5.3304 0.2503 15 6 -1.3192 -5.7412 -1.0526 16 6 1.6817 -5.2448 -1.1555 17 6 2.1342 -4.8322 0.2207 18 6 2.7644 -5.7754 1.0192 19 6 3.2036 -5.4381 2.2834 20 6 3.0145 -4.1535 2.7582 21 6 2.3854 -3.2144 1.9658 22 6 1.9430 -3.5525 0.6958 23 1 -0.4850 0.8399 0.0004 24 1 0.5834 -2.2450 -2.1634 25 1 2.2382 -2.8918 -2.0089 26 1 -1.1816 -3.4971 -0.9338 27 1 0.2877 -5.8550 0.5214 28 1 -1.2640 -5.0319 1.0841 29 1 -2.4085 -5.7127 -1.0755 30 1 -0.8573 -6.5356 -1.6390 31 1 1.2288 -6.2350 -1.1033 32 1 2.5431 -5.2785 -1.8225 33 1 2.9162 -6.7781 0.6478 34 1 3.6940 -6.1764 2.9006 35 1 3.3586 -3.8853 3.7461 36 1 2.2373 -2.2110 2.3369 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260361553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:04 Heat of formation + Delta-G solvation = 44.160710 kcal Electronic energy + Delta-G solvation = -17975.142689 eV Core-core repulsion = 15424.115162 eV Total energy + Delta-G solvation = -2551.027527 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.58505 -38.65234 -36.24792 -34.66316 -32.86293 -31.60079 -29.87399 -27.13003 -25.39151 -23.93155 -23.19645 -22.59828 -22.14117 -19.67163 -18.48507 -17.56737 -17.17708 -16.72242 -16.36511 -15.89792 -15.16981 -14.67697 -14.49763 -14.29667 -14.05467 -13.85426 -13.22548 -12.90989 -12.89047 -12.77380 -12.61854 -12.40024 -12.23736 -12.16792 -11.97599 -11.63479 -11.17774 -11.09359 -10.88832 -10.69474 -9.45715 -9.23220 -8.97913 -8.16375 -6.24799 0.61752 0.73474 1.38018 1.39270 1.46939 2.38861 2.84767 3.06205 3.13661 3.32676 3.93714 4.06034 4.11251 4.22485 4.29761 4.32294 4.34382 4.42979 4.65703 4.71271 4.79687 4.82326 4.91781 5.00329 5.04818 5.14689 5.25128 5.30748 5.36751 5.42814 5.58053 5.69990 5.73151 5.78370 5.93637 6.20048 6.30798 6.34134 6.43548 6.88687 7.39575 8.90412 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.009939 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.057501 B = 2816.461676 C = 3623.879410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.020 3.980 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.045 0.955 9 C 0.044 3.956 10 H 0.040 0.960 11 C 0.077 3.923 12 N -0.503 5.503 13 C 0.009 3.991 14 C -0.213 4.213 15 C -0.149 4.149 16 C 0.092 3.908 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.059 4.059 23 H 0.263 0.737 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -12.297 1.088 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.063 0.937 9 C 0.024 3.976 10 H 0.058 0.942 11 C -0.050 4.050 12 N -0.222 5.222 13 C -0.101 4.101 14 C -0.252 4.252 15 C -0.187 4.187 16 C -0.036 4.036 17 C -0.131 4.131 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.146 4.146 22 C -0.060 4.060 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.149 0.851 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.268 -12.273 0.533 12.492 hybrid contribution 0.321 1.944 1.014 2.216 sum 2.588 -10.329 1.547 10.760 Atomic orbital electron populations 1.70013 1.07211 1.27502 1.51357 1.25665 0.95535 1.02235 0.94471 0.85743 0.78516 0.79361 0.78892 1.19499 1.20931 1.19832 1.21161 0.92826 0.91297 1.50205 0.93670 1.18291 0.96217 0.91265 0.91808 0.94206 1.22157 0.97993 0.87325 0.97573 1.62593 1.02336 1.05854 1.51415 1.22412 0.93906 0.94773 0.99012 1.23607 1.03674 1.05535 0.92368 1.23161 0.99610 0.97024 0.98870 1.21244 0.95352 0.96606 0.90415 1.20484 1.00911 0.93427 0.98304 1.21275 0.98847 0.99545 0.94427 1.21260 1.01192 0.96242 0.96509 1.21303 0.99891 0.94086 1.00003 1.21187 0.99448 0.99079 0.94896 1.20208 0.96560 0.94203 0.94985 0.92836 0.93624 0.92412 0.89670 0.87240 0.90420 0.87560 0.87277 0.88000 0.89358 0.83561 0.83446 0.85076 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.68 12.77 21.45 0.27 -53.40 16 2 C 0.02 1.11 5.45 84.65 0.46 1.57 16 3 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.52 -28.35 7.01 25.60 0.18 -28.17 16 8 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 9 C 0.04 2.19 1.87 -12.32 -0.02 2.17 16 10 H 0.04 2.29 6.14 -2.39 -0.01 2.28 16 11 C 0.08 3.55 5.27 86.21 0.45 4.01 16 12 N -0.50 -19.14 5.23 -875.91 -4.58 -23.72 16 13 C 0.01 0.32 4.57 44.91 0.21 0.52 16 14 C -0.21 -6.97 8.57 30.62 0.26 -6.70 16 15 C -0.15 -4.16 9.97 30.62 0.31 -3.85 16 16 C 0.09 2.95 5.07 85.59 0.43 3.39 16 17 C -0.13 -4.62 3.43 -19.86 -0.07 -4.69 16 18 C -0.12 -3.56 9.16 22.33 0.20 -3.36 16 19 C -0.13 -3.82 10.05 22.22 0.22 -3.59 16 20 C -0.13 -4.56 10.05 22.23 0.22 -4.33 16 21 C -0.13 -5.48 9.09 22.33 0.20 -5.28 16 22 C -0.06 -2.59 4.85 -19.85 -0.10 -2.69 16 23 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 24 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.06 2.63 8.02 -2.39 -0.02 2.61 16 26 H 0.09 3.71 7.59 -2.38 -0.02 3.69 16 27 H 0.11 3.48 4.38 -2.39 -0.01 3.47 16 28 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.11 2.65 7.63 -2.38 -0.02 2.63 16 31 H 0.10 2.72 6.14 -2.38 -0.01 2.71 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 36 H 0.09 4.52 7.37 -2.91 -0.02 4.50 16 Total: -1.00 -61.00 283.41 1.75 -59.25 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.06 Total: 22.98 kcal Atomic # 6 Polarization: -53.97 SS G_CDS: 2.97 Total: -51.00 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -4.31 Total: -77.12 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -61.00 1.75 -59.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260361553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.411 kcal (2) G-P(sol) polarization free energy of solvation -61.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds