Wall clock time and date at job start Mon Mar 30 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34233 * 126.50123 * 2 1 4 4 N 1.36831 * 109.93225 * 180.02562 * 3 2 1 5 5 H 0.96998 * 125.06548 * 180.02562 * 4 3 2 6 6 C 1.37686 * 109.86689 * 359.97438 * 4 3 2 7 7 C 1.39133 * 133.49774 * 180.02562 * 6 4 3 8 8 C 1.37739 * 119.77544 * 179.97438 * 7 6 4 9 9 C 1.38836 * 120.66794 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.73616 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46895 * 118.29316 * 10 9 8 12 12 C 1.53001 * 109.46995 * 358.29652 * 10 9 8 13 13 C 1.50694 * 109.47497 * 238.29420 * 10 9 8 14 14 H 1.08008 * 119.99626 * 0.09342 * 13 10 9 15 15 C 1.37878 * 120.00248 * 180.09330 * 13 10 9 16 16 N 1.31510 * 120.00090 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99858 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47232 * 89.99930 * 17 15 13 19 19 H 1.48499 * 109.47007 * 210.00269 * 17 15 13 20 20 H 1.48503 * 109.46940 * 329.99951 * 17 15 13 21 21 C 1.36625 * 120.52747 * 0.25206 * 9 8 7 22 22 C 1.39630 * 119.76302 * 359.45900 * 21 9 8 23 23 H 1.09001 * 109.47470 * 269.98203 * 1 2 3 24 24 H 1.09005 * 109.47105 * 29.97822 * 1 2 3 25 25 H 1.09001 * 109.47413 * 149.97661 * 1 2 3 26 26 H 1.08009 * 125.03532 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.11058 * 359.97438 * 7 6 4 28 28 H 1.08007 * 119.66797 * 180.02562 * 8 7 6 29 29 H 1.08996 * 109.47079 * 60.00273 * 11 10 9 30 30 H 1.08998 * 109.47607 * 299.99808 * 11 10 9 31 31 H 1.09001 * 109.47220 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.46917 * 179.97438 * 12 10 9 33 33 H 1.08999 * 109.47303 * 299.99613 * 12 10 9 34 34 H 1.08998 * 109.47374 * 60.00273 * 12 10 9 35 35 H 0.96997 * 120.00245 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.11364 * 179.72310 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6888 -0.0006 5 1 4.3775 1.2909 -0.0003 6 6 3.6962 -0.6858 -0.0004 7 6 4.7589 -1.5838 -0.0003 8 6 4.5097 -2.9385 0.0004 9 6 3.2071 -3.4188 0.0005 10 6 2.9585 -4.9052 0.0008 11 6 2.2001 -5.2952 1.2710 12 6 4.2966 -5.6460 -0.0421 13 6 2.1392 -5.2777 -1.2078 14 1 1.8306 -4.5146 -1.9072 15 6 1.7834 -6.5927 -1.4209 16 7 2.1595 -7.5219 -0.5697 17 14 0.7683 -7.0545 -2.9196 18 1 1.6744 -7.3757 -4.0514 19 1 -0.0692 -8.2395 -2.6041 20 1 -0.1074 -5.9152 -3.2945 21 6 2.1487 -2.5548 -0.0052 22 6 2.3783 -1.1775 0.0001 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 1.9634 2.1035 0.0004 27 1 5.7757 -1.2199 -0.0008 28 1 5.3359 -3.6340 0.0009 29 1 1.2469 -4.7675 1.3016 30 1 2.7927 -5.0259 2.1453 31 1 2.0207 -6.3704 1.2715 32 1 4.1168 -6.7211 -0.0415 33 1 4.8369 -5.3681 -0.9470 34 1 4.8892 -5.3766 0.8322 35 1 1.9089 -8.4469 -0.7194 36 1 1.1382 -2.9358 -0.0096 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260363862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:23 Heat of formation + Delta-G solvation = 44.873770 kcal Electronic energy + Delta-G solvation = -17314.264204 eV Core-core repulsion = 14763.267598 eV Total energy + Delta-G solvation = -2550.996606 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72465 -37.46857 -34.27780 -32.57834 -31.15045 -29.47192 -27.61968 -26.27376 -25.48450 -25.04172 -22.11406 -21.39261 -19.33719 -18.35437 -17.32849 -16.05492 -15.37008 -14.95967 -14.18561 -13.98303 -13.51603 -13.20494 -12.90000 -12.72529 -12.51788 -12.24291 -11.83723 -11.46607 -11.37067 -11.06941 -11.03881 -10.75867 -10.53327 -10.29353 -10.26984 -10.03382 -9.46528 -9.21869 -8.94392 -8.71704 -8.27288 -7.41750 -6.94678 -5.90524 -3.99780 1.77736 2.42470 3.11661 3.33895 3.40681 3.45051 3.53962 4.46178 4.72041 5.11450 5.34724 5.36525 5.48854 5.57699 5.84584 5.98265 5.98770 6.18413 6.28504 6.34208 6.49832 6.58433 6.75391 6.83469 6.95507 6.99208 7.09770 7.23544 7.32232 7.38020 7.41893 7.57498 7.76312 7.81540 7.92483 7.97030 8.17525 8.29104 8.54200 9.00800 9.64810 11.10225 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026583 B = 0.007245 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.066350 B = 3863.559951 C = 4420.994539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.174 4.174 3 C 0.030 3.970 4 N -0.604 5.604 5 H 0.407 0.593 6 C 0.076 3.924 7 C -0.147 4.147 8 C -0.097 4.097 9 C -0.055 4.055 10 C 0.098 3.902 11 C -0.126 4.126 12 C -0.133 4.133 13 C -0.495 4.495 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.067 4.067 22 C -0.105 4.105 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.159 0.841 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.027 0.973 30 H 0.008 0.992 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.028 0.972 34 H 0.011 0.989 35 H 0.258 0.742 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 13.164 2.081 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.182 4.182 3 C -0.096 4.096 4 N -0.207 5.207 5 H 0.243 0.757 6 C -0.029 4.029 7 C -0.168 4.168 8 C -0.116 4.116 9 C -0.056 4.056 10 C 0.098 3.902 11 C -0.183 4.183 12 C -0.190 4.190 13 C -0.534 4.534 14 H 0.074 0.926 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.086 4.086 22 C -0.109 4.109 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.177 0.823 27 H 0.125 0.875 28 H 0.143 0.857 29 H 0.046 0.954 30 H 0.027 0.973 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.567 13.054 2.104 13.315 hybrid contribution -0.087 0.128 -0.898 0.911 sum 1.480 13.181 1.207 13.319 Atomic orbital electron populations 1.20064 0.90107 1.01880 1.01250 1.20279 0.95007 0.91309 1.11613 1.21359 0.82654 0.98440 1.07123 1.41552 1.06943 1.05130 1.67116 0.75713 1.18192 0.95787 0.82713 1.06203 1.19905 0.95568 0.92420 1.08930 1.21053 0.97721 0.93400 0.99402 1.20099 0.91427 0.98116 0.95986 1.17186 0.93593 0.84699 0.94744 1.21807 0.97497 1.04059 0.94984 1.21892 0.96341 1.04364 0.96420 1.21132 1.32135 0.92881 1.07209 0.92561 1.24903 0.95984 0.96518 0.96251 1.69814 1.46253 1.00939 1.35684 0.86641 0.80337 0.77981 0.83345 1.20842 1.21325 1.19955 1.20163 0.99739 0.89552 0.99119 1.19151 0.91566 0.93367 1.06862 0.92297 0.92579 0.91658 0.82324 0.87470 0.85681 0.95421 0.97297 0.89637 0.89719 0.95337 0.97003 0.93130 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.41 36.01 0.37 -0.64 16 2 C -0.17 -2.81 6.32 -102.71 -0.65 -3.46 16 3 C 0.03 0.40 11.73 -16.73 -0.20 0.20 16 4 N -0.60 -8.36 6.07 -10.65 -0.06 -8.43 16 5 H 0.41 4.15 8.96 -40.82 -0.37 3.78 16 6 C 0.08 1.35 7.28 -83.99 -0.61 0.74 16 7 C -0.15 -2.61 10.08 -39.43 -0.40 -3.00 16 8 C -0.10 -1.94 8.95 -39.54 -0.35 -2.29 16 9 C -0.06 -1.24 4.71 -104.98 -0.49 -1.73 16 10 C 0.10 2.41 0.58 -156.82 -0.09 2.32 16 11 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 12 C -0.13 -3.16 6.90 37.16 0.26 -2.90 16 13 C -0.50 -13.36 7.61 -34.44 -0.26 -13.62 16 14 H 0.06 1.55 7.54 -52.48 -0.40 1.16 16 15 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 16 N -0.89 -24.33 9.35 55.43 0.52 -23.81 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.07 -1.45 8.61 -39.64 -0.34 -1.79 16 22 C -0.11 -2.05 6.35 -105.14 -0.67 -2.72 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.16 1.49 8.06 -52.48 -0.42 1.06 16 27 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.13 2.37 5.84 -52.48 -0.31 2.06 16 29 H 0.03 0.64 7.47 -51.93 -0.39 0.26 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 2.24 6.06 -51.93 -0.31 1.92 16 32 H 0.08 2.20 6.08 -51.93 -0.32 1.89 16 33 H 0.03 0.65 7.58 -51.93 -0.39 0.26 16 34 H 0.01 0.24 7.42 -51.93 -0.39 -0.14 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.12 2.64 7.59 -52.49 -0.40 2.24 16 LS Contribution 290.55 15.07 4.38 4.38 Total: -1.00 -29.34 290.55 -8.35 -37.69 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.93 Total: 4.01 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -3.22 Total: -30.02 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.45 Total: -32.24 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.34 -8.35 -37.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.561 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds